GNU bug report logs - #44033
[PATCH 1/3] gnu: Add r-decon.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Leo Famulari <leo <at> famulari.name>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#44033: closed ([PATCH 1/3] gnu: Add r-decon.)
Date: Tue, 15 Dec 2020 05:40:02 +0000

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Your message dated Tue, 15 Dec 2020 00:39:27 -0500
with message-id <X9hMD+OWbth66rHA <at> jasmine.lan>
and subject line Re: [bug#44033] [PATCH v2 3/3] gnu: Add r-lpme.
has caused the debbugs.gnu.org bug report #44033,
regarding [PATCH 1/3] gnu: Add r-decon.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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From: Aniket Patil <aniket112.patil <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: Aniket Patil <aniket112.patil <at> gmail.com>
Subject: [PATCH 1/3] gnu: Add r-decon.
Date: Fri, 16 Oct 2020 18:43:36 +0530

* gnu/packages/cran.scm (r-decon): New variable.
---
 gnu/packages/cran.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 59a409f8e9..0370cdd993 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24596,3 +24596,26 @@ enrichment analysis (GSEA) calculation with or without the absolute filtering.
   Without filtering, users can perform (original) two-tailed or one-tailed
 absolute GSEA.")
     (license license:gpl2)))
+
+(define-public r-decon
+  (package
+    (name "r-decon")
+    (version "1.2-4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "decon" version))
+        (sha256
+          (base32
+            "1v4l0xq29rm8mks354g40g9jxn0didzlxg3g7z08m0gvj29zdj7s"))))
+    (properties `((upstream-name . "decon")))
+    (build-system r-build-system)
+    (native-inputs `(("gfortran" ,gfortran)))
+    (home-page
+      "https://cran.r-project.org/web/packages/decon")
+    (synopsis
+      "Deconvolution Estimation in Measurement Error Models")
+    (description
+      "This package contains a collection of functions to deal with nonparametric measurement error problems using deconvolution kernel methods.  We focus two measurement error models in the package: (1) an additive measurement error model, where the goal is to estimate the density or distribution function from contaminated data; (2) nonparametric regression model with errors-in-variables.  The R functions allow the measurement errors to be either homoscedastic or heteroscedastic.  To make the deconvolution estimators computationally more efficient in R, we adapt the \"Fast Fourier Transform\" (FFT) algorithm for density estimation with error-free data to the deconvolution kernel estimation.  Several methods for the selection of the data-driven smoothing parameter are also provided in the package.  See details in: Wang, X.F.  and Wang, B. (2011).  Deconvolution estimation in measurement error models: The R package decon.  Journal of Statistical Software, 39(10), 1-24.")
+    (license license:gpl3+)))
+
-- 
2.28.0

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From: Leo Famulari <leo <at> famulari.name>
To: Aniket Patil <aniket112.patil <at> gmail.com>
Cc: 44033-done <at> debbugs.gnu.org
Subject: Re: [bug#44033] [PATCH v2 3/3] gnu: Add r-lpme.
Date: Tue, 15 Dec 2020 00:39:27 -0500

On Wed, Oct 28, 2020 at 01:21:39PM +0530, Aniket Patil wrote:
> * gnu/packages/cran.scm (r-lpme): New variable.

Thank you for the revised patches!

I fixed another minor linter issue: the home-page URLs redirected
permamently to similar URLs, but with trailing slashes.

Anyways, I pushed the patches as commit
1c6789464a95e98a795be84cc8f1811d411712ce:

https://git.savannah.gnu.org/cgit/guix.git/log/?qt=range&q=795f654b2a0593d2a09273fc7e39d7258c87d548%5E..1c6789464a95e98a795be84cc8f1811d411712ce

Thanks again for the contribution!

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