From debbugs-submit-bounces@debbugs.gnu.org Wed Oct 14 13:24:38 2020 Received: (at submit) by debbugs.gnu.org; 14 Oct 2020 17:24:38 +0000 Received: from localhost ([127.0.0.1]:52925 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kSkVs-00014G-OH for submit@debbugs.gnu.org; Wed, 14 Oct 2020 13:24:38 -0400 Received: from lists.gnu.org ([209.51.188.17]:43790) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kSkVq-000148-Pa for submit@debbugs.gnu.org; Wed, 14 Oct 2020 13:24:31 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47104) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kSkVq-0006SN-Cb for guix-patches@gnu.org; Wed, 14 Oct 2020 13:24:30 -0400 Received: from freeshell.de ([2a01:360:106::2]:55532) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kSkVm-0003Mu-CH for guix-patches@gnu.org; Wed, 14 Oct 2020 13:24:29 -0400 Received: from localhost.localdomain (cst-prg-3-166.cust.vodafone.cz [46.135.3.166]) (Authenticated sender: wz) by freeshell.de (Postfix) with ESMTPSA id 366F035CD7AF for ; Wed, 14 Oct 2020 19:24:18 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freeshell.de; s=mail; t=1602696258; bh=2Jip9Y8ygiohQdZ413vpc+/u08sVuAQLjPKwM2XS7UU=; h=From:To:Subject:Date:From; b=fKyQe6Sp+5gQrjL9cvbr+QAUmMUmRSJvkWVpp/7jPBIkENkQz3MCk94F+Mtx1jqMv fGBSkfm4JB3bNGWxwMX8HQhtCbqL+3HqKqNDhWN36seCVz+zzAyTEaETm2QvA7TT/W GKRxFe8AtzXr3aNz7TmLwwMMNL2144/q9uqTEwfQ= From: =?UTF-8?q?Wiktor=20=C5=BBelazny?= To: guix-patches@gnu.org Subject: [PATCH] gnu: r-sf: Use proj instead of proj.4. Date: Wed, 14 Oct 2020 19:24:05 +0200 Message-Id: <20201014172405.1910-1-wz@freeshell.de> X-Mailer: git-send-email 2.28.0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2a01:360:106::2; envelope-from=wz@freeshell.de; helo=freeshell.de X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) From: Wiktor Żelazny * gnu/packages/cran.scm (r-sf)[inputs]: Replace proj.4 with proj, and add sqlite. This addresses segfaults while loading vector GIS data from a file. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 59a409f8e9..252699c691 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17,7 +17,7 @@ ;;; Copyright © 2018 Marius Bakke ;;; Copyright © 2018, 2019 Brett Gilio ;;; Copyright © 2019 Nicolò Balzarotti -;;; Copyright © 2019 Wiktor Żelazny +;;; Copyright © 2019, 2020 Wiktor Żelazny ;;; Copyright © 2019 Arne Babenhauserheide ;;; Copyright © 2019, 2020 Efraim Flashner ;;; Copyright © 2020 Todor Kondić @@ -90,6 +90,7 @@ #:use-module (gnu packages pulseaudio) ;libsndfile #:use-module (gnu packages python) #:use-module (gnu packages python-xyz) + #:use-module (gnu packages sqlite) #:use-module (gnu packages statistics) #:use-module (gnu packages tcl) #:use-module (gnu packages tls) @@ -13957,7 +13958,8 @@ tessellation.") (inputs `(("gdal" ,gdal) ("geos" ,geos) - ("proj" ,proj.4) + ("proj" ,proj) + ("sqlite" ,sqlite) ("zlib" ,zlib))) (propagated-inputs `(("r-classint" ,r-classint) -- 2.28.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Oct 15 16:11:31 2020 Received: (at 43991-done) by debbugs.gnu.org; 15 Oct 2020 20:11:31 +0000 Received: from localhost ([127.0.0.1]:56690 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kT9aw-0003qG-Hc for submit@debbugs.gnu.org; Thu, 15 Oct 2020 16:11:31 -0400 Received: from mira.cbaines.net ([212.71.252.8]:60788) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kT9as-0003q5-LN for 43991-done@debbugs.gnu.org; Thu, 15 Oct 2020 16:11:25 -0400 Received: from localhost (188.28.126.178.threembb.co.uk [188.28.126.178]) by mira.cbaines.net (Postfix) with ESMTPSA id AEAB827BBEC; Thu, 15 Oct 2020 21:11:21 +0100 (BST) Received: from capella (localhost [127.0.0.1]) by localhost (OpenSMTPD) with ESMTP id 8f5d5eec; Thu, 15 Oct 2020 20:11:19 +0000 (UTC) References: <20201014172405.1910-1-wz@freeshell.de> User-agent: mu4e 1.4.13; emacs 27.1 From: Christopher Baines To: Wiktor =?utf-8?Q?=C5=BBelazny?= Subject: Re: [bug#43991] [PATCH] gnu: r-sf: Use proj instead of proj.4. In-reply-to: <20201014172405.1910-1-wz@freeshell.de> Date: Thu, 15 Oct 2020 21:11:19 +0100 Message-ID: <87ft6fi714.fsf@cbaines.net> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 43991-done Cc: 43991-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Wiktor =C5=BBelazny writes: > From: Wiktor =C5=BBelazny > > * gnu/packages/cran.scm (r-sf)[inputs]: Replace proj.4 with proj, and > add sqlite. > > This addresses segfaults while loading vector GIS data from a file. > --- > gnu/packages/cran.scm | 6 ++++-- > 1 file changed, 4 insertions(+), 2 deletions(-) > > diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm > index 59a409f8e9..252699c691 100644 > --- a/gnu/packages/cran.scm > +++ b/gnu/packages/cran.scm > @@ -17,7 +17,7 @@ > ;;; Copyright =C2=A9 2018 Marius Bakke > ;;; Copyright =C2=A9 2018, 2019 Brett Gilio > ;;; Copyright =C2=A9 2019 Nicol=C3=B2 Balzarotti > -;;; Copyright =C2=A9 2019 Wiktor =C5=BBelazny > +;;; Copyright =C2=A9 2019, 2020 Wiktor =C5=BBelazny > ;;; Copyright =C2=A9 2019 Arne Babenhauserheide > ;;; Copyright =C2=A9 2019, 2020 Efraim Flashner > ;;; Copyright =C2=A9 2020 Todor Kondi=C4=87 > @@ -90,6 +90,7 @@ > #:use-module (gnu packages pulseaudio) ;libsndfile > #:use-module (gnu packages python) > #:use-module (gnu packages python-xyz) > + #:use-module (gnu packages sqlite) > #:use-module (gnu packages statistics) > #:use-module (gnu packages tcl) > #:use-module (gnu packages tls) > @@ -13957,7 +13958,8 @@ tessellation.") > (inputs > `(("gdal" ,gdal) > ("geos" ,geos) > - ("proj" ,proj.4) > + ("proj" ,proj) > + ("sqlite" ,sqlite) > ("zlib" ,zlib))) > (propagated-inputs > `(("r-classint" ,r-classint) Looks good :) I tweaked the commit message slightly, just because I'd normally put the changelog at the end, but I've pushed to master as ae6a61d7311cde7ccb863bcff57e26f7674ebc18. Thanks! --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQKlBAEBCgCPFiEEPonu50WOcg2XVOCyXiijOwuE9XcFAl+IrOdfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldDNF ODlFRUU3NDU4RTcyMEQ5NzU0RTBCMjVFMjhBMzNCMEI4NEY1NzcRHG1haWxAY2Jh aW5lcy5uZXQACgkQXiijOwuE9XceNw//ZIsxvj0oXfJy2+9HzdRwV131a0ElSRWx ucDVSKSd2pqRq1dOSfUjH+YiT9mnV14O80zHMJ3wILPSYC+2PvlVqn0MaSqM5vXK 5zhgEPLdhJIKgZusZDwGY8Em9zlxN8lRQXDMakeDdgFD4UIlWD8Qi4PaEypc9aBO c99BYxvowLjVMokuCQB4AUu3K/ix/xi45VvjigRpkmOqtaKUdbqrbKgBxmMqz5FM H26XuJUI4RvHU52IWvPSRubSg6xKKqmnJWMSniC6d6/OLfQes8CnGTDrJhILuFYe pLaIbcOc/zSC8AoMsZDyTjCokKUDCZnzXUJlVbKInY6XZSEB6oFs2pt9rPWMdkoL b4bUsN/BiTBJEcgMyo0dbzcOSmGxFk/02VyN0yxar6Cml5YaZtXXrNo6AxmpCmEY O1QB0ktLbODz0qCMkPJ6cO0537VgDdGx06ahBvbKFGEI1Wk4rkqV2VD8DjB0aND0 x8u2HP3y13dzamPYRD86ZTKuSakI7CjakCwcn02orUqTJox+DUxi/CrELUGQZCzn tiuDN0c6nFHfarLmjx0Giy/lcLl6c8xH7Ld/YQDPAxTvJ5ZLYY1+e+A9ClnqJNwq 094IcfKYy7byOVheRoiaDiHfQo+lTXmjp5KA/cS0lQTXEleMMmv/OgwQNl3dB1M2 jsePLGUCPp4= =SwlE -----END PGP SIGNATURE----- --=-=-=-- From unknown Mon Aug 18 04:43:05 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. 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