GNU bug report logs - #42564
[PATCH] gnu: Add python-nbval.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Oleg Pykhalov <go.wigust <at> gmail.com>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#42564: closed ([PATCH] gnu: Add python-nbval.)
Date: Wed, 29 Jul 2020 05:18:02 +0000

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Your message dated Wed, 29 Jul 2020 08:17:18 +0300
with message-id <87tuxqlx29.fsf <at> gmail.com>
and subject line Re: [bug#42564] [PATCH] gnu: Add python-nbval.
has caused the debbugs.gnu.org bug report #42564,
regarding [PATCH] gnu: Add python-nbval.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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42564: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=42564
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From: Vinicius Monego <monego <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH] gnu: Add python-nbval.
Date: Mon, 27 Jul 2020 17:42:06 -0300

* gnu/packages/python-check.scm (python-nbval): New variable.
---
 gnu/packages/python-check.scm | 47 +++++++++++++++++++++++++++++++++++
 1 file changed, 47 insertions(+)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index e96ce9e666..cf765e8106 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -650,6 +650,53 @@ service processes for your tests with pytest.")
     (description "This package provides a pytest plugin for aiohttp support.")
     (license license:asl2.0)))
 
+(define-public python-nbval
+  (package
+    (name "python-nbval")
+    (version "0.9.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "nbval" version))
+       (sha256
+        (base32 "1xh2p7g5s5g06caaraf3dsz69bpj7dgw2h3ss67kci789aspnwp8"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'fix-test
+           (lambda _
+             ;; This test fails because of a mismatch in the output of LaTeX
+             ;; equation environments.  Seems OK to skip.
+             (delete-file "tests/ipynb-test-samples/test-latex-pass-correctouput.ipynb")
+             #t))
+         (replace 'check
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (add-installed-pythonpath inputs outputs)
+             (invoke "pytest" "-vv" "-k"
+                     (string-append
+                     ;; This only works with Pytest < 5.
+                      "not nbdime_reporter"
+                     ;; https://github.com/computationalmodelling/nbval/pull/148.
+                      " and not test_timeouts")))))))
+    (native-inputs
+     `(("python-pytest" ,python-pytest)
+       ("python-pytest-cov" ,python-pytest-cov)
+       ("python-sympy" ,python-sympy)))
+    (propagated-inputs
+     `(("python-ipykernel" ,python-ipykernel)
+       ("python-jupyter-client" ,python-jupyter-client)
+       ("python-nbformat" ,python-nbformat)
+       ("python-six" ,python-six)))
+    (home-page "https://github.com/computationalmodelling/nbval")
+    (synopsis "Pytest plugin to validate Jupyter notebooks")
+    (description
+     "This plugin adds functionality to Pytest to recognise and collect Jupyter
+notebooks.  The intended purpose of the tests is to determine whether execution
+of the stored inputs match the stored outputs of the @file{.ipynb} file.  Whilst
+also ensuring that the notebooks are running without errors.")
+    (license license:bsd-3)))
+
 (define-public python-pytest-flask
   (package
     (name "python-pytest-flask")
-- 
2.20.1

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From: Oleg Pykhalov <go.wigust <at> gmail.com>
To: Vinicius Monego <monego <at> posteo.net>
Cc: 42564-done <at> debbugs.gnu.org
Subject: Re: [bug#42564] [PATCH] gnu: Add python-nbval.
Date: Wed, 29 Jul 2020 08:17:18 +0300

[Message part 4 (text/plain, inline)]

Hi,

Vinicius Monego <monego <at> posteo.net> writes:

> * gnu/packages/python-check.scm (python-nbval): New variable.
> ---
>  gnu/packages/python-check.scm | 47 +++++++++++++++++++++++++++++++++++
>  1 file changed, 47 insertions(+)
>
> diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
> index e96ce9e666..cf765e8106 100644
> --- a/gnu/packages/python-check.scm
> +++ b/gnu/packages/python-check.scm
> @@ -650,6 +650,53 @@ service processes for your tests with pytest.")

[…]

Pushed to master.

Thanks,
Oleg.

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