GNU bug report logs - #42141
blast+ is not reproducible

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#42141: closed (blast+ is not reproducible)
Date: Thu, 29 Sep 2022 00:36:01 +0000

[Message part 1 (text/plain, inline)]

Your message dated Wed, 28 Sep 2022 20:35:41 -0400
with message-id <87k05now4i.fsf <at> gmail.com>
and subject line Re: bug#42141: blast+ is not reproducible
has caused the debbugs.gnu.org bug report #42141,
regarding blast+ is not reproducible
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
42141: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=42141
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: bug-guix <at> gnu.org
Subject: blast+ is not reproducible
Date: Tue, 30 Jun 2020 18:42:04 +0200

This should be rather easy to fix:

--8<---------------cut here---------------start------------->8---
diff -r /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check
diff -r /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h
4,13c4,13
< #define NCBI_RANDOM_VALUE_0    1770246234u
< #define NCBI_RANDOM_VALUE_1    2685550394u
< #define NCBI_RANDOM_VALUE_2    1952513968u
< #define NCBI_RANDOM_VALUE_3    4081691487u
< #define NCBI_RANDOM_VALUE_4    1126642990u
< #define NCBI_RANDOM_VALUE_5    2363626105u
< #define NCBI_RANDOM_VALUE_6    444644742u
< #define NCBI_RANDOM_VALUE_7    2799580837u
< #define NCBI_RANDOM_VALUE_8    216161479u
< #define NCBI_RANDOM_VALUE_9    992434062u
---
> #define NCBI_RANDOM_VALUE_0    2851596927u
> #define NCBI_RANDOM_VALUE_1    4039058594u
> #define NCBI_RANDOM_VALUE_2    3204116600u
> #define NCBI_RANDOM_VALUE_3    4270143185u
> #define NCBI_RANDOM_VALUE_4    1366873742u
> #define NCBI_RANDOM_VALUE_5    703144487u
> #define NCBI_RANDOM_VALUE_6    2507785646u
> #define NCBI_RANDOM_VALUE_7    3995716134u
> #define NCBI_RANDOM_VALUE_8    907933519u
> #define NCBI_RANDOM_VALUE_9    1149060107u
--8<---------------cut here---------------end--------------->8---

-- 
Ricardo

[Message part 3 (message/rfc822, inline)]

From: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: 42141-done <at> debbugs.gnu.org
Subject: Re: bug#42141: blast+ is not reproducible
Date: Wed, 28 Sep 2022 20:35:41 -0400

Hi,

Ricardo Wurmus <rekado <at> elephly.net> writes:

> This should be rather easy to fix:
>
> diff -r /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check
> diff -r /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h
> 4,13c4,13
> < #define NCBI_RANDOM_VALUE_0    1770246234u
> < #define NCBI_RANDOM_VALUE_1    2685550394u
> < #define NCBI_RANDOM_VALUE_2    1952513968u
> < #define NCBI_RANDOM_VALUE_3    4081691487u
> < #define NCBI_RANDOM_VALUE_4    1126642990u
> < #define NCBI_RANDOM_VALUE_5    2363626105u
> < #define NCBI_RANDOM_VALUE_6    444644742u
> < #define NCBI_RANDOM_VALUE_7    2799580837u
> < #define NCBI_RANDOM_VALUE_8    216161479u
> < #define NCBI_RANDOM_VALUE_9    992434062u
> ---
>> #define NCBI_RANDOM_VALUE_0    2851596927u
>> #define NCBI_RANDOM_VALUE_1    4039058594u
>> #define NCBI_RANDOM_VALUE_2    3204116600u
>> #define NCBI_RANDOM_VALUE_3    4270143185u
>> #define NCBI_RANDOM_VALUE_4    1366873742u
>> #define NCBI_RANDOM_VALUE_5    703144487u
>> #define NCBI_RANDOM_VALUE_6    2507785646u
>> #define NCBI_RANDOM_VALUE_7    3995716134u
>> #define NCBI_RANDOM_VALUE_8    907933519u
>> #define NCBI_RANDOM_VALUE_9    1149060107u

Not anymore, according to:

--8<---------------cut here---------------start------------->8---
$ guix challenge blast+

1 store items were analyzed:
  - 1 (100.0%) were identical
  - 0 (0.0%) differed
  - 0 (0.0%) were inconclusive
--8<---------------cut here---------------end--------------->8---

That's for blast+ 2.11.0.

Closing!

Maxim

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