From debbugs-submit-bounces@debbugs.gnu.org Tue Jun 30 12:42:21 2020 Received: (at submit) by debbugs.gnu.org; 30 Jun 2020 16:42:21 +0000 Received: from localhost ([127.0.0.1]:51559 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jqJKv-0008Pk-Id for submit@debbugs.gnu.org; Tue, 30 Jun 2020 12:42:21 -0400 Received: from lists.gnu.org ([209.51.188.17]:35994) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jqJKs-0008Pb-1o for submit@debbugs.gnu.org; Tue, 30 Jun 2020 12:42:20 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:59812) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jqJKq-0002A6-8k for bug-guix@gnu.org; Tue, 30 Jun 2020 12:42:17 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21151) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_CBC_SHA1:256) (Exim 4.90_1) (envelope-from ) id 1jqJKo-0007Fe-8w for bug-guix@gnu.org; Tue, 30 Jun 2020 12:42:15 -0400 ARC-Seal: i=1; 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b=YezHLAHaHEmla2co5R3io+0/w1R7wQrqSsHkXx48z3LY4B9QHZbQ9aMiIFonpt5P ZZwSysravdmBLRJQD00VSQZ0sBi6ki84mxKtEZPwdd1/RCWB3r3VEIgklO5siI65iuZ 4Gc0GQqCYOflz6ICj2M66F69ySMTlrTq31K6UDX4= Received: from localhost (p54ad4df8.dip0.t-ipconnect.de [84.173.77.248]) by mx.zohomail.com with SMTPS id 1593535327046210.71078712163296; Tue, 30 Jun 2020 09:42:07 -0700 (PDT) User-agent: mu4e 1.4.10; emacs 26.3 From: Ricardo Wurmus To: bug-guix@gnu.org Subject: blast+ is not reproducible X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Tue, 30 Jun 2020 18:42:04 +0200 Message-ID: <87sgecmroj.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External Received-SPF: pass client-ip=136.143.188.51; envelope-from=rekado@elephly.net; helo=sender4-of-o51.zoho.com X-detected-operating-system: by eggs.gnu.org: First seen = 2020/06/30 08:07:52 X-ACL-Warn: Detected OS = Linux 3.11 and newer [fuzzy] X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H3=-0.01, RCVD_IN_MSPIKE_WL=-0.01, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, URIBL_BLOCKED=0.001 autolearn=_AUTOLEARN X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) This should be rather easy to fix: --8<---------------cut here---------------start------------->8--- diff -r /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check diff -r /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h 4,13c4,13 < #define NCBI_RANDOM_VALUE_0 1770246234u < #define NCBI_RANDOM_VALUE_1 2685550394u < #define NCBI_RANDOM_VALUE_2 1952513968u < #define NCBI_RANDOM_VALUE_3 4081691487u < #define NCBI_RANDOM_VALUE_4 1126642990u < #define NCBI_RANDOM_VALUE_5 2363626105u < #define NCBI_RANDOM_VALUE_6 444644742u < #define NCBI_RANDOM_VALUE_7 2799580837u < #define NCBI_RANDOM_VALUE_8 216161479u < #define NCBI_RANDOM_VALUE_9 992434062u --- > #define NCBI_RANDOM_VALUE_0 2851596927u > #define NCBI_RANDOM_VALUE_1 4039058594u > #define NCBI_RANDOM_VALUE_2 3204116600u > #define NCBI_RANDOM_VALUE_3 4270143185u > #define NCBI_RANDOM_VALUE_4 1366873742u > #define NCBI_RANDOM_VALUE_5 703144487u > #define NCBI_RANDOM_VALUE_6 2507785646u > #define NCBI_RANDOM_VALUE_7 3995716134u > #define NCBI_RANDOM_VALUE_8 907933519u > #define NCBI_RANDOM_VALUE_9 1149060107u --8<---------------cut here---------------end--------------->8--- -- Ricardo From debbugs-submit-bounces@debbugs.gnu.org Wed Sep 28 20:35:51 2022 Received: (at 42141-done) by debbugs.gnu.org; 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[66.158.148.95]) by smtp.gmail.com with ESMTPSA id d14-20020ac800ce000000b00342f8143599sm4374605qtg.13.2022.09.28.17.35.42 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 28 Sep 2022 17:35:42 -0700 (PDT) From: Maxim Cournoyer To: Ricardo Wurmus Subject: Re: bug#42141: blast+ is not reproducible References: <87sgecmroj.fsf@elephly.net> Date: Wed, 28 Sep 2022 20:35:41 -0400 In-Reply-To: <87sgecmroj.fsf@elephly.net> (Ricardo Wurmus's message of "Tue, 30 Jun 2020 18:42:04 +0200") Message-ID: <87k05now4i.fsf@gmail.com> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42141-done Cc: 42141-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, Ricardo Wurmus writes: > This should be rather easy to fix: > > diff -r /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check > diff -r /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h > 4,13c4,13 > < #define NCBI_RANDOM_VALUE_0 1770246234u > < #define NCBI_RANDOM_VALUE_1 2685550394u > < #define NCBI_RANDOM_VALUE_2 1952513968u > < #define NCBI_RANDOM_VALUE_3 4081691487u > < #define NCBI_RANDOM_VALUE_4 1126642990u > < #define NCBI_RANDOM_VALUE_5 2363626105u > < #define NCBI_RANDOM_VALUE_6 444644742u > < #define NCBI_RANDOM_VALUE_7 2799580837u > < #define NCBI_RANDOM_VALUE_8 216161479u > < #define NCBI_RANDOM_VALUE_9 992434062u > --- >> #define NCBI_RANDOM_VALUE_0 2851596927u >> #define NCBI_RANDOM_VALUE_1 4039058594u >> #define NCBI_RANDOM_VALUE_2 3204116600u >> #define NCBI_RANDOM_VALUE_3 4270143185u >> #define NCBI_RANDOM_VALUE_4 1366873742u >> #define NCBI_RANDOM_VALUE_5 703144487u >> #define NCBI_RANDOM_VALUE_6 2507785646u >> #define NCBI_RANDOM_VALUE_7 3995716134u >> #define NCBI_RANDOM_VALUE_8 907933519u >> #define NCBI_RANDOM_VALUE_9 1149060107u Not anymore, according to: --8<---------------cut here---------------start------------->8--- $ guix challenge blast+ 1 store items were analyzed: - 1 (100.0%) were identical - 0 (0.0%) differed - 0 (0.0%) were inconclusive --8<---------------cut here---------------end--------------->8--- That's for blast+ 2.11.0. Closing! Maxim From debbugs-submit-bounces@debbugs.gnu.org Thu Sep 29 05:26:26 2022 Received: (at 42141) by debbugs.gnu.org; 29 Sep 2022 09:26:26 +0000 Received: from localhost ([127.0.0.1]:35992 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1odpoH-0003l3-Rb for submit@debbugs.gnu.org; Thu, 29 Sep 2022 05:26:26 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21108) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1odpoC-0003km-VU; Thu, 29 Sep 2022 05:26:24 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1664443578; cv=none; d=zohomail.com; s=zohoarc; b=bPadN6tjV7mGt2xVZjEPETAw8ohfcWYPKHr1UzB9KjNB1odlfJCCWdJaNJDA+vkkmat5lVsSsK7XPBmeQWnGgJnSWt/6J+tCCbeaKfA4dKYGBSfA+A57dt5Oyj0eDgtTwaTSEzqPYxNFi+SCj0ua1YE5dQV5aHNUJkMZH5t811k= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1664443578; h=Content-Type:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=WbbryJ6sCeeZCXhNHOjifpyE29u3dj698qpIf/5b27U=; b=YreSLTjUOIXHUEahcCiAkqLwhld76Jduu10oaCEUXsSuud3wAuWuwsT5GQlc0+YmJXDy0/tGH6Sq4Ev/EpRZMYXa1yPiv3nwSEW/Pzy+dDwCmNUiCeqrVPVnKZo0A8pwBsD8SH1I4uginYtIM5dksz/IbvsSYwZTk+1vGM+KBZA= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1664443578; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To; bh=WbbryJ6sCeeZCXhNHOjifpyE29u3dj698qpIf/5b27U=; b=cl/vbsZZlvECCqEXah8zIrvX22QDkluPvlIFioSEmBTeYoxTbD2+cjWBtWVhaARh bQfzwU4jmdaf6asQ4Rkblg5hgzZYlPBE3isGMGwvLtXnZylVMMybGZcS7nifpPj6XEC cZhMus35W4RaT6TqziY4dz8txQz0E4IOxG6mD9Ys= Received: from localhost (247-109-142-46.pool.kielnet.net [46.142.109.247]) by mx.zohomail.com with SMTPS id 1664443576976239.86839915486996; Thu, 29 Sep 2022 02:26:16 -0700 (PDT) References: <87sgecmroj.fsf@elephly.net> <87k05now4i.fsf@gmail.com> User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: Maxim Cournoyer Subject: Re: bug#42141: blast+ is not reproducible Date: Thu, 29 Sep 2022 11:24:22 +0200 In-reply-to: <87k05now4i.fsf@gmail.com> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87h70qsf9m.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42141 Cc: 42141@debbugs.gnu.org, GNU Debbugs X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) reopen 42141 thanks Maxim Cournoyer writes: > Hi, > > Ricardo Wurmus writes: > >> This should be rather easy to fix: >> >> diff -r >> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include >> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check >> diff -r >> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h >> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h >> 4,13c4,13 >> < #define NCBI_RANDOM_VALUE_0 1770246234u >> < #define NCBI_RANDOM_VALUE_1 2685550394u >> < #define NCBI_RANDOM_VALUE_2 1952513968u >> < #define NCBI_RANDOM_VALUE_3 4081691487u >> < #define NCBI_RANDOM_VALUE_4 1126642990u >> < #define NCBI_RANDOM_VALUE_5 2363626105u >> < #define NCBI_RANDOM_VALUE_6 444644742u >> < #define NCBI_RANDOM_VALUE_7 2799580837u >> < #define NCBI_RANDOM_VALUE_8 216161479u >> < #define NCBI_RANDOM_VALUE_9 992434062u >> --- >>> #define NCBI_RANDOM_VALUE_0 2851596927u >>> #define NCBI_RANDOM_VALUE_1 4039058594u >>> #define NCBI_RANDOM_VALUE_2 3204116600u >>> #define NCBI_RANDOM_VALUE_3 4270143185u >>> #define NCBI_RANDOM_VALUE_4 1366873742u >>> #define NCBI_RANDOM_VALUE_5 703144487u >>> #define NCBI_RANDOM_VALUE_6 2507785646u >>> #define NCBI_RANDOM_VALUE_7 3995716134u >>> #define NCBI_RANDOM_VALUE_8 907933519u >>> #define NCBI_RANDOM_VALUE_9 1149060107u > > Not anymore, according to: > > $ guix challenge blast+ > > 1 store items were analyzed: > - 1 (100.0%) were identical > - 0 (0.0%) differed > - 0 (0.0%) were inconclusive This is still a problem: --8<---------------cut here---------------start------------->8--- $ diff -ru /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check diff -ru /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h --- /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h 1970-01-01 01:00:01.000000000 +0100 +++ /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h 1970-01-01 01:00:01.000000000 +0100 @@ -1095,7 +1095,7 @@ /* Build signature: compiler-name '_' compiler-version '-' configuration '--' platform-name '-' hostname */ -#define NCBI_SIGNATURE "GCC_1030-DebugMTDLL64--x86_64-unknown-linux5.15.10-gnu2.33-localhost" +#define NCBI_SIGNATURE "GCC_1030-DebugMTDLL64--x86_64-unknown-linux5.15.59-gnu2.33-localhost" /* Define to 1 if SQLColAttribute's last argument is an SQLLEN * */ #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 diff -ru /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h --- /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h 1970-01-01 01:00:01.000000000 +0100 +++ /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h 1970-01-01 01:00:01.000000000 +0100 @@ -1,13 +1,13 @@ #define NCBI_RANDOM_VALUE_TYPE Uint4 #define NCBI_RANDOM_VALUE_MIN 0 #define NCBI_RANDOM_VALUE_MAX 0xffffffffu -#define NCBI_RANDOM_VALUE_0 3249030781u -#define NCBI_RANDOM_VALUE_1 3573796697u -#define NCBI_RANDOM_VALUE_2 2130009325u -#define NCBI_RANDOM_VALUE_3 4284761029u -#define NCBI_RANDOM_VALUE_4 3467737853u -#define NCBI_RANDOM_VALUE_5 3267844710u -#define NCBI_RANDOM_VALUE_6 4107058373u -#define NCBI_RANDOM_VALUE_7 166436459u -#define NCBI_RANDOM_VALUE_8 960927418u -#define NCBI_RANDOM_VALUE_9 3839848519u +#define NCBI_RANDOM_VALUE_0 2845495105u +#define NCBI_RANDOM_VALUE_1 2158634051u +#define NCBI_RANDOM_VALUE_2 4072202242u +#define NCBI_RANDOM_VALUE_3 902228395u +#define NCBI_RANDOM_VALUE_4 1353323915u +#define NCBI_RANDOM_VALUE_5 574823513u +#define NCBI_RANDOM_VALUE_6 4119501261u +#define NCBI_RANDOM_VALUE_7 2477640938u +#define NCBI_RANDOM_VALUE_8 2776595395u +#define NCBI_RANDOM_VALUE_9 270550684u --8<---------------cut here---------------end--------------->8--- -- Ricardo From unknown Mon Aug 11 19:03:14 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: Did not alter fixed versions and reopened. Date: Thu, 29 Sep 2022 09:27:02 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # Did not alter fixed versions and reopened. thanks # This fakemail brought to you by your local debbugs # administrator From debbugs-submit-bounces@debbugs.gnu.org Thu Sep 29 05:33:59 2022 Received: (at 42141) by debbugs.gnu.org; 29 Sep 2022 09:33:59 +0000 Received: from localhost ([127.0.0.1]:36012 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1odpvb-0006By-2m for submit@debbugs.gnu.org; Thu, 29 Sep 2022 05:33:59 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21184) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1odpvY-0006Bp-Nh for 42141@debbugs.gnu.org; Thu, 29 Sep 2022 05:33:57 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1664444034; cv=none; d=zohomail.com; s=zohoarc; b=Vma3KjP3l5FiSeOi79JgOuZCwCSe1rLO9S1HvKn8QXlju7vqhNvXFFbcyVn47IUhfGGFm1pE8MO2vccLvfVXw6R+R52eZwmaPn/blq/VodjmHMKzGr4n+NnyENYVh/KuUV7Ms0geRUOkl7m+SveZ4r45x9NRAfRUFVII4eU2RHI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1664444034; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=vp02wmlJ8olXQZLM4No4MikS8NHvHbg5mWD8ObJ5xQc=; b=eZ/Y6coNPY/Vv1wjoWLvxskLm8VAwX2iIoiEQwgExJz7tQXk8Qq3ZxU0dWpo1ZTeDbBCL3vQEXib7n5znhVNJG93fC/2iqMUl9yMT++WBXIYtyAX2hBtHKhgNfWLU42P6dx46iiyS2UM0vc/1gfXohENrkVgcb4sTjbvYT1ml40= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1664444034; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=vp02wmlJ8olXQZLM4No4MikS8NHvHbg5mWD8ObJ5xQc=; b=X/55mB7hdEaHW44guqN+YYmrt7X79CeX01hAAy0wPNBDelWlhU5OC7Ka+JBTTs/n wlLsZdQDZhDLDzp3YB5ZZQ9nmxXOCEbYabiyNogqtFFHoFJUgufdXyOj7CAkSoNZpB6 iVbGcdgN/Clb4NWFWi/HeagFJyEefepbBWOwRRKg= Received: from localhost (247-109-142-46.pool.kielnet.net [46.142.109.247]) by mx.zohomail.com with SMTPS id 1664444033198777.0750536733952; Thu, 29 Sep 2022 02:33:53 -0700 (PDT) References: <87sgecmroj.fsf@elephly.net> <87k05now4i.fsf@gmail.com> <87h70qsf9m.fsf@elephly.net> User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: Maxim Cournoyer Subject: Re: bug#42141: blast+ is not reproducible Date: Thu, 29 Sep 2022 11:32:05 +0200 In-reply-to: <87h70qsf9m.fsf@elephly.net> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87czbesewx.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42141 Cc: 42141@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Ricardo Wurmus writes: > reopen 42141 > thanks > > Maxim Cournoyer writes: > >> Hi, >> >> Ricardo Wurmus writes: >> >>> This should be rather easy to fix: >>> >>> diff -r >>> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include >>> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check >>> diff -r >>> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include/inclu= de/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h >>> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check= /include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h >>> 4,13c4,13 >>> < #define NCBI_RANDOM_VALUE_0 1770246234u >>> < #define NCBI_RANDOM_VALUE_1 2685550394u >>> < #define NCBI_RANDOM_VALUE_2 1952513968u >>> < #define NCBI_RANDOM_VALUE_3 4081691487u >>> < #define NCBI_RANDOM_VALUE_4 1126642990u >>> < #define NCBI_RANDOM_VALUE_5 2363626105u >>> < #define NCBI_RANDOM_VALUE_6 444644742u >>> < #define NCBI_RANDOM_VALUE_7 2799580837u >>> < #define NCBI_RANDOM_VALUE_8 216161479u >>> < #define NCBI_RANDOM_VALUE_9 992434062u >>> --- >>>> #define NCBI_RANDOM_VALUE_0 2851596927u >>>> #define NCBI_RANDOM_VALUE_1 4039058594u >>>> #define NCBI_RANDOM_VALUE_2 3204116600u >>>> #define NCBI_RANDOM_VALUE_3 4270143185u >>>> #define NCBI_RANDOM_VALUE_4 1366873742u >>>> #define NCBI_RANDOM_VALUE_5 703144487u >>>> #define NCBI_RANDOM_VALUE_6 2507785646u >>>> #define NCBI_RANDOM_VALUE_7 3995716134u >>>> #define NCBI_RANDOM_VALUE_8 907933519u >>>> #define NCBI_RANDOM_VALUE_9 1149060107u >> >> Not anymore, according to: >> >> $ guix challenge blast+ >> >> 1 store items were analyzed: >> - 1 (100.0%) were identical >> - 0 (0.0%) differed >> - 0 (0.0%) were inconclusive > > This is still a problem: > > $ diff -ru /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-incl= ude /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check > diff -ru /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-includ= e/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h /gnu/store/0kbsdr61qpj0= vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/ncbi-= tools++/ncbiconf_unix.h > --- /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/inc= lude/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h 1970-01-01 01:00:01.00000000= 0 +0100 > +++ /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-che= ck/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h 1970-01-01 01:00:01.00= 0000000 +0100 > @@ -1095,7 +1095,7 @@ >=20=20 > /* Build signature: compiler-name '_' compiler-version '-' configuration= '--' > platform-name '-' hostname */ > -#define NCBI_SIGNATURE "GCC_1030-DebugMTDLL64--x86_64-unknown-linux5.15.= 10-gnu2.33-localhost" > +#define NCBI_SIGNATURE "GCC_1030-DebugMTDLL64--x86_64-unknown-linux5.15.= 59-gnu2.33-localhost" >=20=20 > /* Define to 1 if SQLColAttribute's last argument is an SQLLEN * */ > #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 > diff -ru /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-includ= e/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h /gnu/store/0kbsdr61= qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/n= cbi-tools++/ncbi_random_macro.h > --- /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/inc= lude/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h 1970-01-01 01:00:01.0000= 00000 +0100 > +++ /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-che= ck/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h 1970-01-01 01:00:0= 1.000000000 +0100 > @@ -1,13 +1,13 @@ > #define NCBI_RANDOM_VALUE_TYPE Uint4 > #define NCBI_RANDOM_VALUE_MIN 0 > #define NCBI_RANDOM_VALUE_MAX 0xffffffffu > -#define NCBI_RANDOM_VALUE_0 3249030781u > -#define NCBI_RANDOM_VALUE_1 3573796697u > -#define NCBI_RANDOM_VALUE_2 2130009325u > -#define NCBI_RANDOM_VALUE_3 4284761029u > -#define NCBI_RANDOM_VALUE_4 3467737853u > -#define NCBI_RANDOM_VALUE_5 3267844710u > -#define NCBI_RANDOM_VALUE_6 4107058373u > -#define NCBI_RANDOM_VALUE_7 166436459u > -#define NCBI_RANDOM_VALUE_8 960927418u > -#define NCBI_RANDOM_VALUE_9 3839848519u > +#define NCBI_RANDOM_VALUE_0 2845495105u > +#define NCBI_RANDOM_VALUE_1 2158634051u > +#define NCBI_RANDOM_VALUE_2 4072202242u > +#define NCBI_RANDOM_VALUE_3 902228395u > +#define NCBI_RANDOM_VALUE_4 1353323915u > +#define NCBI_RANDOM_VALUE_5 574823513u > +#define NCBI_RANDOM_VALUE_6 4119501261u > +#define NCBI_RANDOM_VALUE_7 2477640938u > +#define NCBI_RANDOM_VALUE_8 2776595395u > +#define NCBI_RANDOM_VALUE_9 270550684u These values are generated here: ncbi-blast-2.11.0+-src/c++/scripts/common/impl/define_random_macros.sh I don=E2=80=99t know if we can just define them to fixed values; it should = be fine. Debian also has a patch for other problems including the NCBI_SIGNATURE value: https://sources.debian.org/data/main/n/ncbi-blast%2B/2.12.0%2Bds-3/debia= n/patches/reprobuild --=20 Ricardo From debbugs-submit-bounces@debbugs.gnu.org Thu Sep 29 18:04:46 2022 Received: (at 42141-done) by debbugs.gnu.org; 29 Sep 2022 22:04:46 +0000 Received: from localhost ([127.0.0.1]:39852 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oe1e9-00021S-0z for submit@debbugs.gnu.org; Thu, 29 Sep 2022 18:04:46 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21153) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oe1e0-00021C-7p for 42141-done@debbugs.gnu.org; Thu, 29 Sep 2022 18:04:43 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1664489073; cv=none; d=zohomail.com; s=zohoarc; b=Fug0fIjveClQXuiTteMexDWvCtTCG0vOJMBBW5/v1wZPbqGDbUAc+ZX/ZW3H7kl85qC8Vcj4ZN9gOOGXuVWT+BDcOvD95sMl4ur+6pVXexU15pFNI4rUbN+wuaUo/Rh2g3liI8g7U3cw7ZVxpT/M/Je3qrvBokjIGJDtDOvfB14= ARC-Message-Signature: i=1; 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Thu, 29 Sep 2022 15:04:31 -0700 (PDT) References: <87sgecmroj.fsf@elephly.net> <87k05now4i.fsf@gmail.com> <87h70qsf9m.fsf@elephly.net> User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: Maxim Cournoyer Subject: Re: bug#42141: blast+ is not reproducible Date: Fri, 30 Sep 2022 00:04:03 +0200 In-reply-to: <87h70qsf9m.fsf@elephly.net> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87zgehrg5w.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42141-done Cc: 42141-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Fixed with commit 1ee2d117d8fa9e2e0d4ec46cc5555497bb5e6337. -- Ricardo From debbugs-submit-bounces@debbugs.gnu.org Thu Sep 29 23:09:12 2022 Received: (at 42141-done) by debbugs.gnu.org; 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[72.10.141.205]) by smtp.gmail.com with ESMTPSA id x14-20020ac8730e000000b0031eb5648b86sm783423qto.41.2022.09.29.20.09.02 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 29 Sep 2022 20:09:02 -0700 (PDT) From: Maxim Cournoyer To: Ricardo Wurmus Subject: Re: bug#42141: blast+ is not reproducible References: <87sgecmroj.fsf@elephly.net> <87k05now4i.fsf@gmail.com> <87h70qsf9m.fsf@elephly.net> <87zgehrg5w.fsf@elephly.net> Date: Thu, 29 Sep 2022 23:09:01 -0400 In-Reply-To: <87zgehrg5w.fsf@elephly.net> (Ricardo Wurmus's message of "Fri, 30 Sep 2022 00:04:03 +0200") Message-ID: <87ill5mucy.fsf@gmail.com> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42141-done Cc: 42141-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hello, Ricardo Wurmus writes: > Fixed with commit 1ee2d117d8fa9e2e0d4ec46cc5555497bb5e6337. Yay! Thank you! And for my curiosity, how did I get the two build farms to agree on an identical build, as reported in 'guix challenge'? That is odd. -- Maxim From debbugs-submit-bounces@debbugs.gnu.org Fri Sep 30 06:06:25 2022 Received: (at 42141-done) by debbugs.gnu.org; 30 Sep 2022 10:06:25 +0000 Received: from localhost ([127.0.0.1]:40552 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oeCuX-0003Xi-3h for submit@debbugs.gnu.org; Fri, 30 Sep 2022 06:06:25 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21161) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oeCuU-0003XY-3p for 42141-done@debbugs.gnu.org; Fri, 30 Sep 2022 06:06:24 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1664532378; cv=none; d=zohomail.com; s=zohoarc; b=ZThUYxeLRKowycySht7jrLST4rmionBKDjb8uPjEzZqT5UjKELOEoGl1gd4OPFp+ZxNpcD8aMIy4FC+TbOq6mznzrMRDtGQMwQVrEPCQ5bebe87vURCBgPl3kMLSuIEZyhV8DOW/ksTCOtTqks9WY1ATn6ssiGn1HbHM7JfzNb0= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1664532378; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=i2VIvBVP8O5xEB2XNr4gESgAV6ReLygU38HALptfXBA=; b=bHLKY8shk4P4tNYjtLJ8JSc1Ym8W6tnQus4fmKKLFYJPLdbG35UCjXxgQdjaF1ISPraXVdfbaaMbwXZUF1rOy66jbf2c2TaXUxjiiNxHCx+5ma50vQPeoKcfueqXtSbQ431sS8VCELPDrvoiYMNtfoDpMBNlOOeJN7aJZQJwJjU= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1664532378; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=i2VIvBVP8O5xEB2XNr4gESgAV6ReLygU38HALptfXBA=; b=AfunfHpjQd18ZRyfuHNMcwvbtnVhbsyB+6lZp0DWjxEjBaqGzgOohxV3SOoIcFko zep9VPGw74cCSNX2ygNnbctzf7z3mjS/ex1KAQ9Q1jlvgXlXg72iHtOcPUz2a/warr0 ibAKLiFbzVQAWylx9z1ICCeQ3s6LXQ/8TEGAA6BQ= Received: from localhost (247-109-142-46.pool.kielnet.net [46.142.109.247]) by mx.zohomail.com with SMTPS id 1664532378106939.2305685243177; Fri, 30 Sep 2022 03:06:18 -0700 (PDT) References: <87sgecmroj.fsf@elephly.net> <87k05now4i.fsf@gmail.com> <87h70qsf9m.fsf@elephly.net> <87zgehrg5w.fsf@elephly.net> <87ill5mucy.fsf@gmail.com> User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: Maxim Cournoyer Subject: Re: bug#42141: blast+ is not reproducible Date: Fri, 30 Sep 2022 12:04:51 +0200 In-reply-to: <87ill5mucy.fsf@gmail.com> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87v8p5qiqx.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42141-done Cc: 42141-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Maxim Cournoyer writes: > Ricardo Wurmus writes: > >> Fixed with commit 1ee2d117d8fa9e2e0d4ec46cc5555497bb5e6337. > > Yay! Thank you! And for my curiosity, how did I get the two build > farms to agree on an identical build, as reported in 'guix challenge'? > > That is odd. I don=E2=80=99t know. I also got the same result from =E2=80=9Cguix challe= nge=E2=80=9D, but I hadn=E2=80=99t built it locally. It was only when I built it on my machine= (and with =E2=80=9C--check=E2=80=9D) that I confirmed that the issue still exist= ed. Any way of making =E2=80=9Cguix challenge=E2=80=9D tell us more about what = it actually compared? --=20 Ricardo From debbugs-submit-bounces@debbugs.gnu.org Fri Sep 30 10:03:36 2022 Received: (at 42141-done) by debbugs.gnu.org; 30 Sep 2022 14:03:36 +0000 Received: from localhost ([127.0.0.1]:42577 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oeGc3-0006ZE-KO for submit@debbugs.gnu.org; Fri, 30 Sep 2022 10:03:35 -0400 Received: from mail-wr1-f52.google.com ([209.85.221.52]:44786) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oeGbo-0006YR-Iz for 42141-done@debbugs.gnu.org; Fri, 30 Sep 2022 10:03:20 -0400 Received: by mail-wr1-f52.google.com with SMTP id c11so7001508wrp.11 for <42141-done@debbugs.gnu.org>; Fri, 30 Sep 2022 07:03:20 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:message-id:date:references :in-reply-to:subject:cc:to:from:from:to:cc:subject:date; bh=p+15BW3GT9hu5Cs6LVF5TReSlD+Xvzo7htrk/7Dl6Ok=; b=L3iGsUXTvztZ5M8//YzKU8p2FWP0BcYOvVFnP2SFnqvE5B7rPcXndHPk8qpAZNMSrj 1n8jxzr50QLsQGC3MHW3eO3TuJ8B9SHJlVKTlO9OswCaizZ525IHg07vbWah0jKGC/sV Ois2NZy0eXIcuTAh+KZP2cUIduwwxuOai5WXWw0JtmB/cwzzYCyzzK88F/O8izeuP0uo HqMm3/E/IpFVKnKRSYfZae4AJ4SypsftWhf2LHD5DF8xmqevFUOE7FnNOfDDO2JNUUNf 9g5NnoaU2PO1zZ4bfg2L9Adw2HL3bDzyGwAdpA0CnukP4AXTLd6mkYsPPCOQpOOLFCmt VhuQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:message-id:date:references :in-reply-to:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date; bh=p+15BW3GT9hu5Cs6LVF5TReSlD+Xvzo7htrk/7Dl6Ok=; b=I2l3SwUdOt9haNzfaVBV612fm7rUYjLLQUXo9DHK2ftfR7TLBcOMULvW1Bi+Lk3BBB 44IhuCVgSCVpR2o1ao3euTHH62aLSje2Q/W0VC3FQ8U5l3T2t2WAoVkAmT6E7BdXtozT sndtJ/cPQcL6xQ+IetvdvFkoFlz7V5qA0SEZLhQeTTco/gwJtawyFAXzTskuLIXfu160 wNM9tvQhizzCcU3h6WUjiG0umHBpK48EmZucBJIBzmfTk4VtXdmuQhuf3FjnQnzEbtai yhorTaLL8verJa8/ncitL4m8Z/Su0/9jzMzYYu5r4iFjYXwfZTgn9cufugCkIETslEHU MXIw== X-Gm-Message-State: ACrzQf0OZ0t7OhUl1Ji+ygBDgdle1zd6zZYWP84s3tF00Xvw5GoLTjog /tFLipbbDC8tkxZwK8MK2THpq1JWmZ8= X-Google-Smtp-Source: AMsMyM5mhZulBKkZ8fO3SZ1uWMM+p4WDU3memwyOoR0CtvxflnJq1rMqn2Cjzanq8uCCJ1ULyaf4/Q== X-Received: by 2002:a5d:4050:0:b0:22c:dfcc:675b with SMTP id w16-20020a5d4050000000b0022cdfcc675bmr2903225wrp.105.1664546594565; Fri, 30 Sep 2022 07:03:14 -0700 (PDT) Received: from pfiuh07 ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id v10-20020a5d43ca000000b00228aea99efcsm2081139wrr.14.2022.09.30.07.03.13 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 30 Sep 2022 07:03:14 -0700 (PDT) From: zimoun To: Maxim Cournoyer , Ricardo Wurmus Subject: Re: bug#42141: blast+ is not reproducible In-Reply-To: <87ill5mucy.fsf@gmail.com> References: <87sgecmroj.fsf@elephly.net> <87k05now4i.fsf@gmail.com> <87h70qsf9m.fsf@elephly.net> <87zgehrg5w.fsf@elephly.net> <87ill5mucy.fsf@gmail.com> Date: Fri, 30 Sep 2022 16:01:34 +0200 Message-ID: <87v8p50xmp.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42141-done Cc: 42141-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, On Thu, 29 Sep 2022 at 23:09, Maxim Cournoyer w= rote: > Ricardo Wurmus writes: > >> Fixed with commit 1ee2d117d8fa9e2e0d4ec46cc5555497bb5e6337. > > Yay! Thank you! And for my curiosity, how did I get the two build > farms to agree on an identical build, as reported in 'guix challenge'? > > That is odd. Because blast+ is multi-outputs and =E2=80=99out=E2=80=99 is fine contrary = to =E2=80=99include=E2=80=99: --8<---------------cut here---------------start------------->8--- $ guix challenge blast+:include /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include contents = differ: local hash: 0q4nssknlmc54m8abndn9bhrlwm4m28lkb75i1wnwr0ghbalj02x https://ci.guix.gnu.org/nar/lzip/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast%2= B-2.11.0-include: 0q4nssknlmc54m8abndn9bhrlwm4m28lkb75i1wnwr0ghbalj02x https://bordeaux.guix.gnu.org/nar/lzip/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-b= last%2B-2.11.0-include: 0cakizfsqb1lla62cmwnng1h9gvqgf3lyjk0k7lkiaisj713mpzx differing files: /include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h /include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h 1 store items were analyzed: - 0 (0.0%) were identical - 1 (100.0%) differed - 0 (0.0%) were inconclusive --8<---------------cut here---------------end--------------->8--- Cheers, simon From debbugs-submit-bounces@debbugs.gnu.org Fri Sep 30 10:38:28 2022 Received: (at 42141-done) by debbugs.gnu.org; 30 Sep 2022 14:38:28 +0000 Received: from localhost ([127.0.0.1]:42613 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oeH9o-0001E9-Bz for submit@debbugs.gnu.org; Fri, 30 Sep 2022 10:38:28 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21163) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oeH9k-0001Dz-HU for 42141-done@debbugs.gnu.org; Fri, 30 Sep 2022 10:38:27 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1664548702; cv=none; d=zohomail.com; s=zohoarc; b=nLINAkZ9VpjAYZayRw8bARtSj5j9s6j5R6LzqMKNd6WbK7PVmncKYigmmmIrkBI1wMolF6W19Cw5/CdR2c0zIMNnDEPyTphkXz3MAh3v5Kxa6jNEbgQvTODPf+6vXBlseT3G7LcLN/E3nCucFhbF5lWKxqrhBF5xW6UZcpZRZ0g= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1664548702; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=e8cje2GPM56U0+x8RWoj9Hh5jf1SvrUKsHITSdicj0A=; b=JsGCT+IpGc4AJBUEWOrVnYh0h3omzreCOEg5eh6Wfl4jVhnWuyW6czc693aHg3ApnlqdpPiJIHPNy6fyszNmk2Zck+tRQMsBvjoxOSjV+T+umjE8s1sFQka996mvEV8DV8MfpPBXEmG4wGoT40Bsq8USQX+nC1h5TiE2qCV7tw0= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1664548702; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=e8cje2GPM56U0+x8RWoj9Hh5jf1SvrUKsHITSdicj0A=; b=GROQKjBjtlzyGbasHVBVBK0xTEXyMxP200EIyTtshUb1PY344nwNd9ygwg8PLc4M QpW7GSycxX0Zn8HzB63rNuD4nqqhziCLwLl/lLAJJISd65oBM0pvTzVwAvewWpfouxn djSLqPLwt+r8zO1vUI0vAP9glQ/N8hLpFXnWT3nQ= Received: from localhost (247-109-142-46.pool.kielnet.net [46.142.109.247]) by mx.zohomail.com with SMTPS id 1664548700756349.9770860325549; Fri, 30 Sep 2022 07:38:20 -0700 (PDT) References: <87sgecmroj.fsf@elephly.net> <87k05now4i.fsf@gmail.com> <87h70qsf9m.fsf@elephly.net> <87zgehrg5w.fsf@elephly.net> <87ill5mucy.fsf@gmail.com> <87v8p50xmp.fsf@gmail.com> User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: zimoun Subject: Re: bug#42141: blast+ is not reproducible Date: Fri, 30 Sep 2022 16:38:06 +0200 In-reply-to: <87v8p50xmp.fsf@gmail.com> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87mtahq65i.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42141-done Cc: 42141-done@debbugs.gnu.org, Maxim Cournoyer X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) zimoun writes: > Hi, > > On Thu, 29 Sep 2022 at 23:09, Maxim Cournoyer = wrote: >> Ricardo Wurmus writes: >> >>> Fixed with commit 1ee2d117d8fa9e2e0d4ec46cc5555497bb5e6337. >> >> Yay! Thank you! And for my curiosity, how did I get the two build >> farms to agree on an identical build, as reported in 'guix challenge'? >> >> That is odd. > > Because blast+ is multi-outputs and =E2=80=99out=E2=80=99 is fine contrar= y to =E2=80=99include=E2=80=99: > > $ guix challenge blast+:include > /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include content= s differ: > local hash: 0q4nssknlmc54m8abndn9bhrlwm4m28lkb75i1wnwr0ghbalj02x > https://ci.guix.gnu.org/nar/lzip/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast= %2B-2.11.0-include: 0q4nssknlmc54m8abndn9bhrlwm4m28lkb75i1wnwr0ghbalj02x > https://bordeaux.guix.gnu.org/nar/lzip/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p= -blast%2B-2.11.0-include: 0cakizfsqb1lla62cmwnng1h9gvqgf3lyjk0k7lkiaisj713m= pzx > differing files: > /include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h > /include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h > > 1 store items were analyzed: > - 0 (0.0%) were identical > - 1 (100.0%) differed > - 0 (0.0%) were inconclusive Ah, thanks for explaining! --=20 Ricardo From debbugs-submit-bounces@debbugs.gnu.org Fri Sep 30 17:21:06 2022 Received: (at 42141-done) by debbugs.gnu.org; 30 Sep 2022 21:21:06 +0000 Received: from localhost ([127.0.0.1]:43066 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oeNRS-0005F4-AA for submit@debbugs.gnu.org; Fri, 30 Sep 2022 17:21:06 -0400 Received: from mail-qk1-f171.google.com ([209.85.222.171]:43970) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oeNRQ-0005EE-H8 for 42141-done@debbugs.gnu.org; Fri, 30 Sep 2022 17:21:04 -0400 Received: by mail-qk1-f171.google.com with SMTP id o7so3603446qkj.10 for <42141-done@debbugs.gnu.org>; Fri, 30 Sep 2022 14:21:04 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:user-agent:message-id :in-reply-to:date:references:subject:cc:to:from:from:to:cc:subject :date; bh=PlwCQqHPRyeJV2+ywb9hJYvr/0AuBhubE+Fs6/3vmqo=; b=PuzAcTq7lx7at0Ia4sU/YzVF5V6BWXXpZJIFQtUQ5fiQ8ABKfFxpERG806hakAvHkl Zs3mwZyhLs2wYDI9bROI36mUtJNpLlB3VCjKNiNhdED1OwyBdVKQGWHDsZwAK58d9GTK EZC4icp0ilBqtsYvdHR0V3/8Ips3R6+0QZUn2EPOJ+8dHvMhYUNunSalptnMFso7vb9N Hm3f2vu/m8SZaUaJOHwS/jGBYI/k71cBeDZtDjCtJkrgiTgrLfqWK41HqprCP9RU5QhI dbYHXTMAZ+dh3ef3EeSRQ6qNJs9YyPiy8oXMhNfUfLTTdNKu7iRVMCGxDk0uKHbXBO7h R1Cg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:user-agent:message-id :in-reply-to:date:references:subject:cc:to:from:x-gm-message-state :from:to:cc:subject:date; bh=PlwCQqHPRyeJV2+ywb9hJYvr/0AuBhubE+Fs6/3vmqo=; b=SYUz4BCxj486GVjBI+FD/dRafOoEJAwN+MVIc9jQqXDvK4kyZEZ6DcNG4THeG5ba3H EB42ck84jdT5h0Bph4Xp4CeeeaY+vTOzPWxPBgGV+f5JKsxKjGpR2UxtPMwCW5JYqryg vwgvMn3ZMGgsMGP8/sM5cjWC8RfnegoK9IsZ6QYFpj+EFzKAOgp/DLxLzOgsliMWk600 bbtqR41wzcMm6VfUpxZrvfXPvI3yaTJmS1EzW9sfkXHJmI/yOSGF58bkyh5CtMtD3kMp 3x8wUw65yKMgW/EhYdh2UyaygIkCw/lRWya2Uh2+0DWGrjT+MIox5j3tcJJVI9Cj6tLx prZA== X-Gm-Message-State: ACrzQf21enysEIteCvVh5oJgBJmVIyWbkED7B24Km1arHP4HsWWKFKou o2UI+gCEuqNi/r7n34V9Ieo+mggw8w0= X-Google-Smtp-Source: AMsMyM6tEnAMdC4cvCHYgxqGzDXVV37Eld6reH56yAjyzRQCHoxRaQ43pnIg8uoxYig2qQym8Lu7eg== X-Received: by 2002:a37:f50b:0:b0:6cb:be4d:6ce8 with SMTP id l11-20020a37f50b000000b006cbbe4d6ce8mr7702474qkk.135.1664572858855; Fri, 30 Sep 2022 14:20:58 -0700 (PDT) Received: from hurd (dsl-10-141-205.b2b2c.ca. [72.10.141.205]) by smtp.gmail.com with ESMTPSA id y18-20020a05622a005200b003445bb107basm3037562qtw.75.2022.09.30.14.20.58 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 30 Sep 2022 14:20:58 -0700 (PDT) From: Maxim Cournoyer To: Ricardo Wurmus Subject: Re: bug#42141: blast+ is not reproducible References: <87sgecmroj.fsf@elephly.net> <87k05now4i.fsf@gmail.com> <87h70qsf9m.fsf@elephly.net> <87zgehrg5w.fsf@elephly.net> <87ill5mucy.fsf@gmail.com> <87v8p50xmp.fsf@gmail.com> <87mtahq65i.fsf@elephly.net> Date: Fri, 30 Sep 2022 17:20:57 -0400 In-Reply-To: <87mtahq65i.fsf@elephly.net> (Ricardo Wurmus's message of "Fri, 30 Sep 2022 16:38:06 +0200") Message-ID: <87a66glft2.fsf@gmail.com> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42141-done Cc: 42141-done@debbugs.gnu.org, zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, Ricardo Wurmus writes: > zimoun writes: > >> Hi, >> >> On Thu, 29 Sep 2022 at 23:09, Maxim Cournoyer wrote: >>> Ricardo Wurmus writes: >>> >>>> Fixed with commit 1ee2d117d8fa9e2e0d4ec46cc5555497bb5e6337. >>> >>> Yay! Thank you! And for my curiosity, how did I get the two build >>> farms to agree on an identical build, as reported in 'guix challenge'? >>> >>> That is odd. >> >> Because blast+ is multi-outputs and =E2=80=99out=E2=80=99 is fine contra= ry to =E2=80=99include=E2=80=99: >> >> $ guix challenge blast+:include >> /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include conten= ts differ: >> local hash: 0q4nssknlmc54m8abndn9bhrlwm4m28lkb75i1wnwr0ghbalj02x >> https://ci.guix.gnu.org/nar/lzip/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blas= t%2B-2.11.0-include: 0q4nssknlmc54m8abndn9bhrlwm4m28lkb75i1wnwr0ghbalj02x >> https://bordeaux.guix.gnu.org/nar/lzip/0kbsdr61qpj0vkc6s8g2kbp4dq936n0= p-blast%2B-2.11.0-include: 0cakizfsqb1lla62cmwnng1h9gvqgf3lyjk0k7lkiaisj713= mpzx >> differing files: >> /include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h >> /include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h >> >> 1 store items were analyzed: >> - 0 (0.0%) were identical >> - 1 (100.0%) differed >> - 0 (0.0%) were inconclusive > > Ah, thanks for explaining! Ah! Shouldn't the default be to compare all outputs? It seems that'd be less surprising and useful. What do you think? --=20 Maxim From unknown Mon Aug 11 19:03:14 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 29 Oct 2022 11:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator