From unknown Sun Jun 22 08:04:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#42105] [PATCH] gnu: Add r-randomforestsrc. Resent-From: Peter Lo Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sun, 28 Jun 2020 08:11:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 42105 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 42105@debbugs.gnu.org Cc: Peter Lo X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.159333184929260 (code B ref -1); Sun, 28 Jun 2020 08:11:01 +0000 Received: (at submit) by debbugs.gnu.org; 28 Jun 2020 08:10:49 +0000 Received: from localhost ([127.0.0.1]:45130 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jpSOn-0007br-Fi for submit@debbugs.gnu.org; Sun, 28 Jun 2020 04:10:49 -0400 Received: from lists.gnu.org ([209.51.188.17]:40346) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jpSOm-0007bi-3j for submit@debbugs.gnu.org; Sun, 28 Jun 2020 04:10:48 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49444) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jpSOl-00016l-VL for guix-patches@gnu.org; Sun, 28 Jun 2020 04:10:47 -0400 Received: from mail-pf1-x42c.google.com ([2607:f8b0:4864:20::42c]:38900) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jpSOi-0002iR-Pq for guix-patches@gnu.org; Sun, 28 Jun 2020 04:10:47 -0400 Received: by mail-pf1-x42c.google.com with SMTP id 67so2500711pfg.5 for ; Sun, 28 Jun 2020 01:10:44 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id; bh=qdhCrPICdnLPdyL88w/yxYsI5uC5IwIljkkQVUfRrMw=; b=OT7veWxtb7PKkGVzfXJ0nhHZ7+FNNpRRB6wYYukIQtmjT/ogn75VRYiz6f9zhDyVXi K1kMvKxOGSL+mUvnsPP+HGpOgHfL6194SygbhHqFbSHnoao1AlsVvKASiJrOGTbSnxXa TimUGT8ku83AnPyO8hT21S866uAIvm3shzhasHllPVNjrZFim00nAUgWGsy9MmLMYD8h e+GoRGaVCzaRB/QtrgtEqwdoNPU1nFz3wfZv3KqJoBXmirmw/ReaBRScHkCxHeMECwMr yCb/pr/n7BQ0D43S31ZO6VL3hvRAucPx+vL2/2hL1HVQN3qNNdGb5wnV1B/eUorsWp2v g56A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id; bh=qdhCrPICdnLPdyL88w/yxYsI5uC5IwIljkkQVUfRrMw=; b=NU86trX/xLCiLyNcJ9HcLatSIX4Iw9xn6hxNkYv13oSK51yDepH04Ihqy8R/iv6s8i lPxol33+YLw6NAFxXJftAPsTTYL5OgwBBfdrgogodxp+z+0fgfdLmmwwS75Ib0OPS/tY YGreigLucEMkEuPlzDcNht0+wJUcHU1bPEWhf+GjxcW1BEX3il9Dn858NStiM8pn/CLe bcMQ3HQP1HDKvhsofpfc7+87xIl114nqAfAX6dFBUkcbvlKQXizSOMvpAOZL3jObEXqM DYn+uWN5bwFviuXNN2cKfHN1TucDrZlBNcyOKU4hoZjmXte2Pc8JPsgcnvduA8KufqEu pwNQ== X-Gm-Message-State: AOAM532DGMKFOs41mtcZGqzEjOSXctUWSKl6QoyDbsHTc3zvDhBvhjzD dDxxPwuxyWOmTJoWJakyDZEPcF0z/r8= X-Google-Smtp-Source: ABdhPJzS4SQUvmWCaLw8Ke13KI9bXifAWi34zYTx2c9K8hEVXtvPEpwF1viDsllddKZ9b8hH6UeKbw== X-Received: by 2002:a62:7f55:: with SMTP id a82mr1252248pfd.61.1593331842582; Sun, 28 Jun 2020 01:10:42 -0700 (PDT) Received: from localhost.localdomain (059149170072.ctinets.com. [59.149.170.72]) by smtp.gmail.com with ESMTPSA id s188sm29718083pfb.118.2020.06.28.01.10.41 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sun, 28 Jun 2020 01:10:41 -0700 (PDT) From: Peter Lo Date: Sun, 28 Jun 2020 16:10:29 +0800 Message-Id: <20200628081029.11086-1-peterloleungyau@gmail.com> X-Mailer: git-send-email 2.17.1 Received-SPF: pass client-ip=2607:f8b0:4864:20::42c; envelope-from=peterloleungyau@gmail.com; helo=mail-pf1-x42c.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, URIBL_BLOCKED=0.001 autolearn=_AUTOLEARN X-Spam_action: no action X-Spam-Score: 0.7 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/cran.scm (r-randomforestsrc): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab5e57c0e2..1a5ff5ef8e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22325,3 +22325,31 @@ across a wide array of bioinformatic R packages.") and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.") (license license:gpl3))) + +(define-public r-randomforestsrc + (package + (name "r-randomforestsrc") + (version "2.9.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "randomForestSRC" version)) + (sha256 + (base32 + "05ifvj49jv0n5p6k46milpgj9r10sc5aw23fypyyibdgwpwvwixw")))) + (properties + `((upstream-name . "randomForestSRC"))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/web/packages/randomForestSRC/") + (synopsis + "Fast Unified Random Forests for Survival, Regression, and Classification") + (description + "Fast OpenMP parallel computing of Breiman's random forests for +survival, competing risks, regression and classification based on +Ishwaran and Kogalur's popular random survival forests (RSF) package. +Handles missing data and now includes multivariate, unsupervised +forests, quantile regression and solutions for class imbalanced data. +New fast interface using subsampling and confidence regions for +variable importance.") + (license license:gpl3+))) -- 2.17.1 From unknown Sun Jun 22 08:04:54 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Peter Lo Subject: bug#42105: closed ([PATCH] gnu: Add r-randomforestsrc.) Message-ID: References: <87k0p6tkug.fsf@elephly.net> <20200628081029.11086-1-peterloleungyau@gmail.com> X-Gnu-PR-Message: they-closed 42105 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 42105@debbugs.gnu.org Date: Tue, 13 Apr 2021 12:45:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1618317902-12068-1" This is a multi-part message in MIME format... ------------=_1618317902-12068-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #42105: [PATCH] gnu: Add r-randomforestsrc. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 42105@debbugs.gnu.org. --=20 42105: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D42105 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1618317902-12068-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 42105-done) by debbugs.gnu.org; 13 Apr 2021 12:44:50 +0000 Received: from localhost ([127.0.0.1]:59243 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lWIPR-000389-N3 for submit@debbugs.gnu.org; Tue, 13 Apr 2021 08:44:49 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21153) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lWIPQ-00037x-7a for 42105-done@debbugs.gnu.org; Tue, 13 Apr 2021 08:44:48 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1618317884; cv=none; d=zohomail.com; s=zohoarc; b=ZewFaf4ML9qo6+apcwKus1cS/b0W2cqKfnSbtM9qCbF6cCANpmlMmz0JbYjffUzU40MhKb+FZukwYCQ5C3pRjlaWin6yhPNxEdWaCTgU7qepspds5Op7vaLlxeZKrLmIuntSjjEj6gaT3KjgNfF50n4cXRqGpMPk/Qf5a2bJpB8= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1618317884; h=Content-Type:Content-Transfer-Encoding:Date:From:MIME-Version:Message-ID:Subject:To; bh=2THtgiyyULkJ4nCih7mlxRKA0eEaJ3fF06/1QXbXqb0=; b=KVyiPACNZluGpOZd8XFhgdoqCY4z8FolN1GhmGuTKJ6Pt+hKorv1sM+/NgBeXL3V3PCyS7Icc+7KW4FQr8ubbras0k/DBx6vBiGIBnE5HFNWf/OvovQGW5p7C45gWXHvDY6gaZjwFx4QVLtx3sNOYw5h3XY2VEHQ+oCaJrctobU= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1618317884; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:To:Subject:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=2THtgiyyULkJ4nCih7mlxRKA0eEaJ3fF06/1QXbXqb0=; b=I9dyg5hoq1fk7aeqmnhE2GPAWoFuzRMykskweVUaXaFP8YvAY9vliH66nN6RrM53 R1xW3KmlEiBrIZNHhUbuFBna7sn/Ba87RpcmhtN2sBk4ry9Nrp+XVSg7Hk4NsUC/Iay DEhdw3kVojmjh451QJLG+GgpeXM0U3hkZYpYf3p0= Received: from localhost (p54ad4d62.dip0.t-ipconnect.de [84.173.77.98]) by mx.zohomail.com with SMTPS id 1618317882073591.8531518614311; Tue, 13 Apr 2021 05:44:42 -0700 (PDT) User-agent: mu4e 1.4.15; emacs 27.2 From: Ricardo Wurmus To: 42105-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-randomforestsrc. X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Tue, 13 Apr 2021 14:44:39 +0200 Message-ID: <87k0p6tkug.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 42105-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) My apologies for overlooking this patch! I just applied it. I tried upgrading the package, but the newer version indirectly=20 depends on visnetwork, which bundles a lot of minified JavaScript,=20 so I=E2=80=99ll leave that for later. Thank you for the patch! --=20 Ricardo ------------=_1618317902-12068-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 28 Jun 2020 08:10:49 +0000 Received: from localhost ([127.0.0.1]:45130 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jpSOn-0007br-Fi for submit@debbugs.gnu.org; Sun, 28 Jun 2020 04:10:49 -0400 Received: from lists.gnu.org ([209.51.188.17]:40346) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jpSOm-0007bi-3j for submit@debbugs.gnu.org; Sun, 28 Jun 2020 04:10:48 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49444) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jpSOl-00016l-VL for guix-patches@gnu.org; Sun, 28 Jun 2020 04:10:47 -0400 Received: from mail-pf1-x42c.google.com ([2607:f8b0:4864:20::42c]:38900) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jpSOi-0002iR-Pq for guix-patches@gnu.org; Sun, 28 Jun 2020 04:10:47 -0400 Received: by mail-pf1-x42c.google.com with SMTP id 67so2500711pfg.5 for ; Sun, 28 Jun 2020 01:10:44 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id; bh=qdhCrPICdnLPdyL88w/yxYsI5uC5IwIljkkQVUfRrMw=; b=OT7veWxtb7PKkGVzfXJ0nhHZ7+FNNpRRB6wYYukIQtmjT/ogn75VRYiz6f9zhDyVXi K1kMvKxOGSL+mUvnsPP+HGpOgHfL6194SygbhHqFbSHnoao1AlsVvKASiJrOGTbSnxXa TimUGT8ku83AnPyO8hT21S866uAIvm3shzhasHllPVNjrZFim00nAUgWGsy9MmLMYD8h e+GoRGaVCzaRB/QtrgtEqwdoNPU1nFz3wfZv3KqJoBXmirmw/ReaBRScHkCxHeMECwMr yCb/pr/n7BQ0D43S31ZO6VL3hvRAucPx+vL2/2hL1HVQN3qNNdGb5wnV1B/eUorsWp2v g56A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id; bh=qdhCrPICdnLPdyL88w/yxYsI5uC5IwIljkkQVUfRrMw=; b=NU86trX/xLCiLyNcJ9HcLatSIX4Iw9xn6hxNkYv13oSK51yDepH04Ihqy8R/iv6s8i lPxol33+YLw6NAFxXJftAPsTTYL5OgwBBfdrgogodxp+z+0fgfdLmmwwS75Ib0OPS/tY YGreigLucEMkEuPlzDcNht0+wJUcHU1bPEWhf+GjxcW1BEX3il9Dn858NStiM8pn/CLe bcMQ3HQP1HDKvhsofpfc7+87xIl114nqAfAX6dFBUkcbvlKQXizSOMvpAOZL3jObEXqM DYn+uWN5bwFviuXNN2cKfHN1TucDrZlBNcyOKU4hoZjmXte2Pc8JPsgcnvduA8KufqEu pwNQ== X-Gm-Message-State: AOAM532DGMKFOs41mtcZGqzEjOSXctUWSKl6QoyDbsHTc3zvDhBvhjzD dDxxPwuxyWOmTJoWJakyDZEPcF0z/r8= X-Google-Smtp-Source: ABdhPJzS4SQUvmWCaLw8Ke13KI9bXifAWi34zYTx2c9K8hEVXtvPEpwF1viDsllddKZ9b8hH6UeKbw== X-Received: by 2002:a62:7f55:: with SMTP id a82mr1252248pfd.61.1593331842582; Sun, 28 Jun 2020 01:10:42 -0700 (PDT) Received: from localhost.localdomain (059149170072.ctinets.com. [59.149.170.72]) by smtp.gmail.com with ESMTPSA id s188sm29718083pfb.118.2020.06.28.01.10.41 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sun, 28 Jun 2020 01:10:41 -0700 (PDT) From: Peter Lo To: guix-patches@gnu.org Subject: [PATCH] gnu: Add r-randomforestsrc. Date: Sun, 28 Jun 2020 16:10:29 +0800 Message-Id: <20200628081029.11086-1-peterloleungyau@gmail.com> X-Mailer: git-send-email 2.17.1 Received-SPF: pass client-ip=2607:f8b0:4864:20::42c; envelope-from=peterloleungyau@gmail.com; helo=mail-pf1-x42c.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, URIBL_BLOCKED=0.001 autolearn=_AUTOLEARN X-Spam_action: no action X-Spam-Score: 0.7 (/) X-Debbugs-Envelope-To: submit Cc: Peter Lo X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/cran.scm (r-randomforestsrc): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab5e57c0e2..1a5ff5ef8e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22325,3 +22325,31 @@ across a wide array of bioinformatic R packages.") and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.") (license license:gpl3))) + +(define-public r-randomforestsrc + (package + (name "r-randomforestsrc") + (version "2.9.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "randomForestSRC" version)) + (sha256 + (base32 + "05ifvj49jv0n5p6k46milpgj9r10sc5aw23fypyyibdgwpwvwixw")))) + (properties + `((upstream-name . "randomForestSRC"))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/web/packages/randomForestSRC/") + (synopsis + "Fast Unified Random Forests for Survival, Regression, and Classification") + (description + "Fast OpenMP parallel computing of Breiman's random forests for +survival, competing risks, regression and classification based on +Ishwaran and Kogalur's popular random survival forests (RSF) package. +Handles missing data and now includes multivariate, unsupervised +forests, quantile regression and solutions for class imbalanced data. +New fast interface using subsampling and confidence regions for +variable importance.") + (license license:gpl3+))) -- 2.17.1 ------------=_1618317902-12068-1--