From unknown Sat Jun 21 05:06:41 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#42102 <42102@debbugs.gnu.org> To: bug#42102 <42102@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-fastshap. Reply-To: bug#42102 <42102@debbugs.gnu.org> Date: Sat, 21 Jun 2025 12:06:41 +0000 retitle 42102 [PATCH] gnu: Add r-fastshap. reassign 42102 guix-patches submitter 42102 Peter Lo severity 42102 normal tag 42102 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Sun Jun 28 03:16:39 2020 Received: (at submit) by debbugs.gnu.org; 28 Jun 2020 07:16:39 +0000 Received: from localhost ([127.0.0.1]:45063 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jpRYM-0006Cx-QT for submit@debbugs.gnu.org; Sun, 28 Jun 2020 03:16:39 -0400 Received: from lists.gnu.org ([209.51.188.17]:35260) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jpRYK-0006Co-8U for submit@debbugs.gnu.org; Sun, 28 Jun 2020 03:16:37 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:42732) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jpRYJ-0003uj-Vm for guix-patches@gnu.org; Sun, 28 Jun 2020 03:16:36 -0400 Received: from mail-pl1-x62a.google.com ([2607:f8b0:4864:20::62a]:46899) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jpRYI-0004M5-6T for guix-patches@gnu.org; Sun, 28 Jun 2020 03:16:35 -0400 Received: by mail-pl1-x62a.google.com with SMTP id u9so2272008pls.13 for ; Sun, 28 Jun 2020 00:16:33 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id; bh=1hjNBFRy8Zuo+INvr4p13Pc6r0k4d6uxWyRPQMiyz/E=; b=lzrr2uKpLRpRmfwncbi3CF8j90UNMgft5nDnKQzZiDLU4N7qTZ9VF/9v++Vr8LyF1K dY5hc0/EbwGx2NEUqB35zkVGdK9E6s5WP16vr/ZvKFDeuT4G0fd/L50X6A7G9T2unrJI CRZQmlx3l+P5ozGecnoqHq8uRRAkuPXQHeUwHmc9PpVi/jjbGyIs2CjXXtCcQY4rG/Q4 r4mlH1nKcsBoWXkEiykDk/GsYtlLPEVvYUCcsHOvwr0GN+ixxfkgHcmyNufKJNFj1F4D BmqapUmoQqKJJTaItECL0Lori6OKl13S6kFNm64TOFtn4UAxYyrkvs3mU6R52kMTu+vK 0UkQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id; bh=1hjNBFRy8Zuo+INvr4p13Pc6r0k4d6uxWyRPQMiyz/E=; b=I0/QGi+W+bHk3CLQLesrds5G4jAGom1M7QEfXIzl8l9bm/auBhNRBNl7NwRBQ6nMnv Eq9aaq2hJ5vJ5c9sk96ES35rGy2pZUdV0f7LsUDiSJUtHv+oV5CjodABusamRtdFcqO3 a68onnsuFZP3fjcrSFKwuqazp57YQSC1S4yzrookpwoCCLyckop0XxT9O7xL8uUqktYX WdYf2JSMfe6oVA7oSbaDoJuMcBQwSK9rcY7piSm98KQHSC1+cRd7Zd4Jd5m/37BLNUoZ S/X+B+nzbTQ/zM+oZZnoUiv63eguz44iXdRnJlmtgEjW3ssUa8OMb6YSqhkyLROOvMpw lBfQ== X-Gm-Message-State: AOAM532eEPQOEUywiEPuJE1c2hhQJHZigDgco/6PWr2A5zBUiaD8ogWn BZDltUp+aw8K7eCSqp97VRISPV3vvHw= X-Google-Smtp-Source: ABdhPJzWycOZjSE2/3AciKWr6NZDeEMGq/8TbTVm2Ej79baniGctWdsQPsemZqV38Gh+PMNhXB6hJA== X-Received: by 2002:a17:90a:7409:: with SMTP id a9mr11761114pjg.107.1593328592212; Sun, 28 Jun 2020 00:16:32 -0700 (PDT) Received: from localhost.localdomain (059149170072.ctinets.com. [59.149.170.72]) by smtp.gmail.com with ESMTPSA id h3sm6857663pjz.23.2020.06.28.00.16.30 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sun, 28 Jun 2020 00:16:31 -0700 (PDT) From: Peter Lo To: guix-patches@gnu.org Subject: [PATCH] gnu: Add r-fastshap. Date: Sun, 28 Jun 2020 15:16:19 +0800 Message-Id: <20200628071619.4030-1-peterloleungyau@gmail.com> X-Mailer: git-send-email 2.17.1 Received-SPF: pass client-ip=2607:f8b0:4864:20::62a; envelope-from=peterloleungyau@gmail.com; helo=mail-pl1-x62a.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=_AUTOLEARN X-Spam_action: no action X-Spam-Score: 0.7 (/) X-Debbugs-Envelope-To: submit Cc: Peter Lo X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/cran.scm (r-fastshap): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab5e57c0e2..03e6bf6189 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22325,3 +22325,36 @@ across a wide array of bioinformatic R packages.") and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.") (license license:gpl3))) + +(define-public r-fastshap + (package + (name "r-fastshap") + (version "0.0.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "fastshap" version)) + (sha256 + (base32 + "08f25ib5mry6h8lvj0g3clc9kfl5g2wdd8x8bw455wwmbcm6x5vg")))) + (properties `((upstream-name . "fastshap"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-matrixstats" ,r-matrixstats) + ("r-plyr" ,r-plyr) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-tibble" ,r-tibble))) + (home-page + "https://github.com/bgreenwell/fastshap") + (synopsis "Fast Approximate Shapley Values") + (description + "Computes fast (relative to other implementations) approximate +Shapley values for any supervised learning model. Shapley values help +to explain the predictions from any black box model using ideas from +game theory; see Strumbel and Kononenko (2014) + for details.") + (license license:gpl2+))) -- 2.17.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Aug 04 10:49:45 2020 Received: (at 42102-done) by debbugs.gnu.org; 4 Aug 2020 14:49:45 +0000 Received: from localhost ([127.0.0.1]:48811 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1k2yG9-00071X-Av for submit@debbugs.gnu.org; Tue, 04 Aug 2020 10:49:45 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21150) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1k2yG5-00071M-AG for 42102-done@debbugs.gnu.org; Tue, 04 Aug 2020 10:49:44 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1596552578; cv=none; d=zohomail.com; s=zohoarc; b=K0iKHmyBU+fXv5llH63pneYLOCiVrAQ7VOZrmcLnjWqagsCPUP/t1k8Ek1C2F8cNAJnqIo1cEyig5SFhXxryOV19bgsSNC0lFI6tZgxVvX88adlSrYuc/Ve3OWKA7lNOS5ZsOzs2dFaRu5g3qPCetYEDIO7FyB94TSsC5yjNyJg= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1596552578; h=Content-Type:Cc:Date:From:MIME-Version:Message-ID:Subject:To; bh=0yANo6kSJSva5q+1L3KFoxbynR6EuC8QAfiNMPns0s8=; b=bkagLCamJYqT7yg26EvkrvVQzUa6UKi1u/5CZth3rJs/4LQhMANrWSRdNOUI14OlflwtxTgNeWZ6OSw3H16/XkwWcceQEaYT2KRVdeuCBlPlaw+TpR1n6/J33obwjpN9D/z8eeli4ZYNgddwQAUMkTDkzkyPyyx0ANkbKgvX6wo= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1596552578; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:To:Cc:Subject:Date:Message-ID:MIME-Version:Content-Type; bh=0yANo6kSJSva5q+1L3KFoxbynR6EuC8QAfiNMPns0s8=; b=A4PsQwyayHX8/BUMBokhkyi5B9g6mKkPcddjEGfgAdG7VYAhoW08jbh2bvfuuYCw JkpLXUwbkrs+lw8wUziayHBpMa+lR5IEIns1+o4bGaVl3IRK60AipYJ41zbFOeFBB1a SEmSf8SHGpCJaMAOorkneqnF4CMMG/pAZ0nuwIHs= Received: from localhost (p54ad4bae.dip0.t-ipconnect.de [84.173.75.174]) by mx.zohomail.com with SMTPS id 1596552575070325.9271428377641; Tue, 4 Aug 2020 07:49:35 -0700 (PDT) User-agent: mu4e 1.4.10; emacs 26.3 From: Ricardo Wurmus To: 42102-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-fastshap. X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Tue, 04 Aug 2020 16:49:32 +0200 Message-ID: <87a6zafoub.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 42102-done Cc: peterloleungyau@gmail.com X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Peter, thank you for this patch. I made minor changes to indentation and description and pushed it to the master branch with commit 285bd00cd4. Thanks! -- Ricardo From unknown Sat Jun 21 05:06:41 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Wed, 02 Sep 2020 11:24:04 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator