From unknown Fri Jun 20 18:10:39 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#40779 <40779@debbugs.gnu.org> To: bug#40779 <40779@debbugs.gnu.org> Subject: Status: Submission of CRAN Package Descriptions r-dcv r-stam r-grouped r-sgloptim r-awsmethods r-aws r-tea r-rcdd r-rxnat Reply-To: bug#40779 <40779@debbugs.gnu.org> Date: Sat, 21 Jun 2025 01:10:39 +0000 retitle 40779 Submission of CRAN Package Descriptions r-dcv r-stam r-groupe= d r-sgloptim r-awsmethods r-aws r-tea r-rcdd r-rxnat reassign 40779 guix-patches submitter 40779 Naga Malleswari severity 40779 normal thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 22 15:40:53 2020 Received: (at submit) by debbugs.gnu.org; 22 Apr 2020 19:40:53 +0000 Received: from localhost ([127.0.0.1]:53325 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRLEr-0006Fs-7a for submit@debbugs.gnu.org; Wed, 22 Apr 2020 15:40:53 -0400 Received: from lists.gnu.org ([209.51.188.17]:38948) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRLEp-0006Fl-Go for submit@debbugs.gnu.org; Wed, 22 Apr 2020 15:40:51 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49720) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jRLEo-0000sF-3V for guix-patches@gnu.org; Wed, 22 Apr 2020 15:40:50 -0400 X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,RCVD_IN_DNSWL_LOW, RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,SPF_PASS, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.90_1) (envelope-from ) id 1jRLEn-0007nA-B8 for guix-patches@gnu.org; Wed, 22 Apr 2020 15:40:49 -0400 Received: from mx1.riseup.net ([198.252.153.129]:55946) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jRLEm-0007j1-LC for guix-patches@gnu.org; Wed, 22 Apr 2020 15:40:48 -0400 Received: from bell.riseup.net (unknown [10.0.1.178]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (Client CN "*.riseup.net", Issuer "Sectigo RSA Domain Validation Secure Server CA" (not verified)) by mx1.riseup.net (Postfix) with ESMTPS id 496rQ63D0hzFcvJ for ; Wed, 22 Apr 2020 12:40:46 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=riseup.net; s=squak; t=1587584446; bh=HcxU0sq0ACx+gS4gesQpiraOLAHlKG8wZiPHNfYy1TE=; h=To:From:Subject:Date:From; b=S+pVSVTP51ZMaPAKWctfvWFlZut/zAi5qQVgx3fNzkxes8uFkYwAzQgzqdJUWbKdA sRrP/jZky3+50eULIjyw5J5vXHQNscE4pdMQ4LIxmQw783X7X37KWShZ11elpEYZhr tDQ0LOti8fuMFYzlkdr/xg1jERV9bO7VpYc/AKlg= X-Riseup-User-ID: A1A2536A4AFD37A06A724FD53292426CC2431055A0F9234FC0D2D465A4296C46 Received: from [127.0.0.1] (localhost [127.0.0.1]) by bell.riseup.net (Postfix) with ESMTPSA id 496rQ52m2hzJn9m; Wed, 22 Apr 2020 12:40:45 -0700 (PDT) To: guix-patches@gnu.org From: Naga Malleswari Subject: Submission of CRAN Package Descriptions r-dcv r-stam r-grouped r-sgloptim r-awsmethods r-aws r-tea r-rcdd r-rxnat Message-ID: <16bc2796-7e78-a7a5-7962-1c220752904a@riseup.net> Date: Thu, 23 Apr 2020 01:10:40 +0530 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 7bit Content-Language: en-US Received-SPF: pass client-ip=198.252.153.129; envelope-from=nagamalli@riseup.net; helo=mx1.riseup.net X-detected-operating-system: by eggs.gnu.org: First seen = 2020/04/22 15:40:46 X-ACL-Warn: Detected OS = Linux 3.11 and newer [fuzzy] X-Received-From: 198.252.153.129 X-Spam-Score: 0.2 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.8 (/) I am writing a cover letter to generate bug ID to submit multiple patches r-dcv r-stam r-grouped r-sgloptim r-awsmethods r-aws r-tea r-rcdd r-rxnat -- Regards NagaMalli From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 22 16:04:27 2020 Received: (at 40779) by debbugs.gnu.org; 22 Apr 2020 20:04:27 +0000 Received: from localhost ([127.0.0.1]:53383 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRLba-0006wA-L0 for submit@debbugs.gnu.org; Wed, 22 Apr 2020 16:04:27 -0400 Received: from mx1.riseup.net ([198.252.153.129]:50830) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRLbX-0006w0-Kj for 40779@debbugs.gnu.org; Wed, 22 Apr 2020 16:04:21 -0400 Received: from bell.riseup.net (unknown [10.0.1.178]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (Client CN "*.riseup.net", Issuer "Sectigo RSA Domain Validation Secure Server CA" (not verified)) by mx1.riseup.net (Postfix) with ESMTPS id 496rxF4cpszFdhm; Wed, 22 Apr 2020 13:04:17 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=riseup.net; s=squak; t=1587585857; bh=at0D0yaWvHl+ZJEa+DN8MZn1AWlnuJSqLPvFRn5fCGw=; h=Subject:To:References:Cc:From:Date:In-Reply-To:From; b=foGMGye2oZKr38udohTr2bskfsTTA934BY65MyL2SanKIwafvYi7cFsL7GxNZk9DK rw/JDzVbo0RjtySEPMg3ZoNv/1ZODkp1pGbQEAitd08zrTPUUU8Ik4a3pKFpHOF6ti Hw9MlVaDOpAuK7hCq2mLccMrGi/cwV9s4rcGQ9iM= X-Riseup-User-ID: 8B03DDA00166189DF143689BA4F841F30053FE42E5DD80F93046D7411D8807A1 Received: from [127.0.0.1] (localhost [127.0.0.1]) by bell.riseup.net (Postfix) with ESMTPSA id 496rxB6LMHzJmvG; Wed, 22 Apr 2020 13:04:14 -0700 (PDT) Subject: Re: bug#40779: Acknowledgement (Submission of CRAN Package Descriptions r-dcv r-stam r-grouped r-sgloptim r-awsmethods r-aws r-tea r-rcdd r-rxnat) To: 40779@debbugs.gnu.org, Danny Milosavljevic , Ricardo Wurmus References: <16bc2796-7e78-a7a5-7962-1c220752904a@riseup.net> From: Naga Malleswari Message-ID: Date: Thu, 23 Apr 2020 01:34:11 +0530 MIME-Version: 1.0 In-Reply-To: Content-Type: multipart/mixed; boundary="------------2A44BD8E34A7629FB4C00A2E" Content-Language: en-US X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 40779 Cc: =?UTF-8?Q?G=c3=a1bor_Boskovits?= X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) This is a multi-part message in MIME format. --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 7bit Submitting Patches for CRAN PACKAGES r-dcv r-stam r-grouped r-sgloptim r-awsmethods r-aws r-tea r-rcdd r-rxnat I have done these patches earlier while practice. Submitting them to the guix system. On 23/04/20 1:11 am, GNU bug Tracking System wrote: > Thank you for filing a new bug report with debbugs.gnu.org. > > This is an automatically generated reply to let you know your message > has been received. > > Your message is being forwarded to the package maintainers and other > interested parties for their attention; they will reply in due course. > > Your message has been sent to the package maintainer(s): > guix-patches@gnu.org > > If you wish to submit further information on this problem, please > send it to 40779@debbugs.gnu.org. > > Please do not send mail to help-debbugs@gnu.org unless you wish > to report a problem with the Bug-tracking system. > -- Regards NagaMalli --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/x-patch; charset=UTF-8; name="0009-gnu-Add-r-rxnat.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0009-gnu-Add-r-rxnat.patch" >From 4812d174a235f5f545f5d7109df427fee341813a Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Thu, 23 Apr 2020 01:29:26 +0530 Subject: [PATCH 9/9] gnu: Add r-rxnat. * gnu/packages/cran.scm (r-rxnat): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b6a9a88067..09a561e219 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21375,3 +21375,29 @@ as convex hull of set of points and rays. Also does linear programming and redundant generator elimination. All functions can use exact infinite-precision rational arithmetic.") (license license:gpl2))) + +(define-public r-rxnat + (package + (name "r-rxnat") + (version "1.0.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "Rxnat" version)) + (sha256 + (base32 + "12xcs2l6vn50bwzfmv60j1qahjw2npfm1a3yjhffcxzh6p8chwbg")))) + (properties + `((upstream-name . "Rxnat"))) + (build-system r-build-system) + (propagated-inputs + `(("r-httr" ,r-httr) + ("r-rcurl" ,r-rcurl))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://cran.r-project.org/web/packages/Rxnat") + (synopsis "Queries and extracts Images from Extensible Neuroimaging Archive Toolkit") + (description + "Allows communication with Extensible Neuroimaging Archive Toolkit. +Rxnat uses the XNAT REST API to perform data queries and download images.") + (license license:gpl2))) -- 2.25.1 --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/x-patch; charset=UTF-8; name="0008-gnu-Add-r-rcdd.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0008-gnu-Add-r-rcdd.patch" >From 3fae8711be15ff332d5378a33de34b5fd70bb2af Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Thu, 23 Apr 2020 01:28:31 +0530 Subject: [PATCH 8/9] gnu: Add r-rcdd. * gnu/packages/cran.scm (r-rcdd): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e4efa402d5..b6a9a88067 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21349,3 +21349,29 @@ methods for climate-growth model in the climate reconstruction from tree rings, including Sign Test statistic, Reduction of Error statistic, Product Mean Test, Durbin-Watson statistic etc.") (license license:gpl2))) + +(define-public r-rcdd + (package + (name "r-rcdd") + (version "1.2-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "rcdd" version)) + (sha256 + (base32 + "0pzpbqnlgzr240iici70278py5wnbbxkzlgn112f9wv5ga3riric")))) + (properties + `((upstream-name . "rcdd"))) + (build-system r-build-system) + (inputs + `(("gmp" ,gmp))) + (home-page "http://www.stat.umn.edu/geyer/rcdd/") + (synopsis "Computational Geometry") + (description + "Converts back and forth between two representations of a convex +polytope: as solution of a set of linear equalities and inequalities and +as convex hull of set of points and rays. Also does linear programming and +redundant generator elimination. All functions can use exact +infinite-precision rational arithmetic.") + (license license:gpl2))) -- 2.25.1 --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/x-patch; charset=UTF-8; name="0007-gnu-Add-r-dcv.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0007-gnu-Add-r-dcv.patch" >From b1bb80e24748cf63f075dcf1e749f2b7ae559478 Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Thu, 23 Apr 2020 01:24:04 +0530 Subject: [PATCH 7/9] gnu: Add r-dcv. * gnu/packages/cran.scm (r-dcv): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a2949d9d6e..e4efa402d5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21324,3 +21324,28 @@ at Random assumption.") to conduct Spatio-Temporal Analysis and Modelling,including Exploratory Spatio-Temporal Analysis and Inferred Spatio-Temporal Modelling.") (license license:gpl2+))) + +(define-public r-dcv + (package + (name "r-dcv") + (version "0.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "dcv" version)) + (sha256 + (base32 + "12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj")))) + (properties + `((upstream-name . "dcv"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lmtest" ,r-lmtest))) + (home-page "https://cran.r-project.org/web/packages/dcv") + (synopsis "Conventional Cross-validation statistics for climate-growth model") + (description + "This package performs several conventional Cross-validation statistical +methods for climate-growth model in the climate reconstruction from +tree rings, including Sign Test statistic, Reduction of Error statistic, +Product Mean Test, Durbin-Watson statistic etc.") + (license license:gpl2))) -- 2.25.1 --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/x-patch; charset=UTF-8; name="0005-gnu-Add-r-grouped.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0005-gnu-Add-r-grouped.patch" >From 9906a033dfae2e4a7e5c482d4719166f8e3d3730 Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Thu, 23 Apr 2020 01:22:22 +0530 Subject: [PATCH 5/9] gnu: Add r-grouped. * gnu/packages/cran.scm (r-grouped): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2f4d53c970..93e691a26b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21276,3 +21276,26 @@ applicable to a broad class of loss functions. Use of parallel computing for cross validation and subsampling is supported through the foreach and doParallel packages.") (license license:gpl2+))) + +(define-public r-grouped + (package + (name "r-grouped") + (version "0.6-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "grouped" version)) + (sha256 + (base32 + "1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976")))) + (properties + `((upstream-name . "grouped"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass))) + (home-page "https://cran.r-project.org/web/packages/grouped") + (synopsis "Regression Analysis of Grouped and Coarse Data") + (description + "Regression models for grouped and coarse data, under the Coarsened +at Random assumption.") + (license license:gpl2+))) -- 2.25.1 --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/x-patch; charset=UTF-8; name="0006-gnu-Add-r-stam.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0006-gnu-Add-r-stam.patch" >From 574f7921578ef96a2d1fbe82a73c1164f6fb746f Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Thu, 23 Apr 2020 01:23:07 +0530 Subject: [PATCH 6/9] gnu: Add r-stam. * gnu/packages/cran.scm (r-stam): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 93e691a26b..a2949d9d6e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21299,3 +21299,28 @@ doParallel packages.") "Regression models for grouped and coarse data, under the Coarsened at Random assumption.") (license license:gpl2+))) + +(define-public r-stam + (package + (name "r-stam") + (version "0.0-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "stam" version)) + (sha256 + (base32 + "1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv")))) + (properties + `((upstream-name . "stam"))) + (build-system r-build-system) + (propagated-inputs + `(("r-np" ,r-np) + ("r-sp" ,r-sp))) + (home-page "https://cran.r-project.org/web/packages/stam") + (synopsis "Spatio-Temporal Analysis and Modelling") + (description + "Stam is an evolving package that target on the various methods +to conduct Spatio-Temporal Analysis and Modelling,including Exploratory +Spatio-Temporal Analysis and Inferred Spatio-Temporal Modelling.") + (license license:gpl2+))) -- 2.25.1 --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/x-patch; charset=UTF-8; name="0004-gnu-Add-r-sgloptim.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0004-gnu-Add-r-sgloptim.patch" >From e45c000e1ac6c4c73358f2a32aa7f8ca3c92178d Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Thu, 23 Apr 2020 01:21:19 +0530 Subject: [PATCH 4/9] gnu: Add r-sgloptim. * gnu/packages/cran.scm (r-sgloptim): New variable. --- gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5f55fd62d4..2f4d53c970 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21240,3 +21240,39 @@ procedures in 1D, 2D and 3D. This includes the Propagation-Separation Approach to adaptive smoothing, the Intersecting Confidence Intervals (@dfn{ICI}), variational approaches and a non-local means filter.") (license license:gpl2+))) + +(define-public r-sgloptim + (package + (name "r-sgloptim") + (version "1.3.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "sglOptim" version)) + (sha256 + (base32 + "15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr")))) + (properties + `((upstream-name . "sglOptim"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-doparallel" ,r-doparallel) + ("r-foreach" ,r-foreach) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppprogress" ,r-rcppprogress))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/nielsrhansen/sglOptim") + (synopsis "Generic Sparse Group Lasso Solver") + (description + "Fast generic solver for sparse group lasso optimization problems. +The loss (objective) function must be defined in a C++ module. The +optimization problem is solved using a coordinate gradient descent +algorithm. Convergence of the algorithm is established and the algorithm is +applicable to a broad class of loss functions. Use of parallel computing for +cross validation and subsampling is supported through the foreach and +doParallel packages.") + (license license:gpl2+))) -- 2.25.1 --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/x-patch; charset=UTF-8; name="0003-gnu-Add-r-aws.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0003-gnu-Add-r-aws.patch" >From 4fa46cd6fd5fd00b0c81a302d61d72bfd293cccc Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Thu, 23 Apr 2020 01:20:01 +0530 Subject: [PATCH 3/9] gnu: Add r-aws. * gnu/packages/cran.scm (r-aws): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c856d133b7..5f55fd62d4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21212,3 +21212,31 @@ GPD-GoF-tests is also implemented here.") "Defines the method extract and provides @code{openMP} support as needed in several packages like @code{aws},@code{adimpro},@code{fmri},@code{dwi}.") (license license:gpl2+))) + +(define-public r-aws + (package + (name "r-aws") + (version "2.4-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "aws" version)) + (sha256 + (base32 + "1czlsy64nx6j7h1smgb561yyv3f98pwqwglk77yla4mx3fp14bvq")))) + (properties + `((upstream-name . "aws"))) + (build-system r-build-system) + (propagated-inputs + `(("r-awsmethods" ,r-awsmethods) + ("r-gsl" ,r-gsl))) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "http://www.wias-berlin.de/people/polzehl/") + (synopsis "Adaptive Weights Smoothing") + (description + "We provide a collection of R-functions implementing adaptive smoothing +procedures in 1D, 2D and 3D. This includes the Propagation-Separation Approach +to adaptive smoothing, the Intersecting Confidence Intervals (@dfn{ICI}), +variational approaches and a non-local means filter.") + (license license:gpl2+))) -- 2.25.1 --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/x-patch; charset=UTF-8; name="0002-gnu-Add-r-awsmethods.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0002-gnu-Add-r-awsmethods.patch" >From 0de70a861633665a4e971901f2ae4ea38c104b3e Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Thu, 23 Apr 2020 01:15:40 +0530 Subject: [PATCH 2/9] gnu: Add r-awsmethods. * gnu/packages/cran.scm (r-awsmethods): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ac55916964..c856d133b7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21191,3 +21191,24 @@ which is the number of data in the tail. The third class is motivated by graphical inspection.In addition, a sequential testing procedure for GPD-GoF-tests is also implemented here.") (license license:gpl3))) + +(define-public r-awsmethods + (package + (name "r-awsmethods") + (version "1.1-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "awsMethods" version)) + (sha256 + (base32 + "0hbmrcpdyg15zg4rysscsmxpxlpy0dkxx2aa63qibq7l1k14v4sh")))) + (properties + `((upstream-name . "awsMethods"))) + (build-system r-build-system) + (home-page "http://www.wias-berlin.de/software/imaging/") + (synopsis "Class and Methods Definitions") + (description + "Defines the method extract and provides @code{openMP} support as needed +in several packages like @code{aws},@code{adimpro},@code{fmri},@code{dwi}.") + (license license:gpl2+))) -- 2.25.1 --------------2A44BD8E34A7629FB4C00A2E Content-Type: text/x-patch; charset=UTF-8; name="0001-gnu-Add-r-tea.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0001-gnu-Add-r-tea.patch" >From de01c0bceaee3062d32fdca209bc35280695d1cd Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Thu, 23 Apr 2020 01:13:12 +0530 Subject: [PATCH 1/9] gnu: Add r-tea. * gnu/packages/cran.scm (r-tea): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 70cb7cc700..ac55916964 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21162,3 +21162,32 @@ evaluated interactively.") Bayes factors, posterior model probabilities, and normalizing constants in general, via different versions of bridge sampling.") (license license:gpl2+))) + +(define-public r-tea + (package + (name "r-tea") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "tea" version)) + (sha256 + (base32 + "0ql7lrxk0ihm49kqsvz79ig8i54rwiy9nxav4v9hy72j9kj5bgjn")))) + (properties + `((upstream-name . "tea"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix))) + (home-page "https://cran.r-project.org/web/packages/tea") + (synopsis "Threshold Estimation Approaches") + (description + "Different approaches for selecting the threshold in generalized Pareto +distributions.Most of them are based on minimizing the AMSE-criterion or +atleast by reducing the bias of the assumed GPD-model. Others are +heuristically motivated by searching for stable sample paths, i.e. a +nearly constant region of the tail index estimator with respect to k, +which is the number of data in the tail. The third class is motivated by +graphical inspection.In addition, a sequential testing procedure for +GPD-GoF-tests is also implemented here.") + (license license:gpl3))) -- 2.25.1 --------------2A44BD8E34A7629FB4C00A2E-- From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 23 11:11:32 2020 Received: (at 40779) by debbugs.gnu.org; 23 Apr 2020 15:11:32 +0000 Received: from localhost ([127.0.0.1]:55706 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRdVk-0000Iw-2P for submit@debbugs.gnu.org; Thu, 23 Apr 2020 11:11:32 -0400 Received: from sender4-of-o53.zoho.com ([136.143.188.53]:21341) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRdVi-0000Io-GA for 40779@debbugs.gnu.org; Thu, 23 Apr 2020 11:11:31 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1587654679; cv=none; d=zohomail.com; s=zohoarc; b=RVbFAZ4k5GbbVO0JFPVAybqgcNyQJ7C/xCJcHdC+oXUSSjVt+Egm3gg6J9H2cM6PFKGpbTZQABY1KBs4Gvtq9xwMJ+FvuOfQE3Mnb8I+dJiWMP78OgQip6obv1HTdqMfuMLojTDm6zel15PmrSNgjcNs5BdsVspc3bMA5cSFeNk= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1587654679; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=cQxfgecJYJpK/gTnu64rDsYHbk0SWyBy+KHOlZvVH1I=; b=iewlrx92q3WkswORcKx7f22rD7GTIGDbUWwcfzJ4QNMerZp4CvkrFdpxpQn0foWySmXj9Hu+yuGB11kpqLaXb4ToZsopzgaEY0sryaaYlSIs1HD0teK6xDOewGyS9T6gpBpg3qrl/1viF/aP7V/EANughMUDEnj6pLHuXJCBlPY= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1587654679; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=cQxfgecJYJpK/gTnu64rDsYHbk0SWyBy+KHOlZvVH1I=; b=G2jLjSAY9/a7xB5Nv1/LNj06lEq3af06zUJrSquRKbWFXZxO9k74M+nqJJtB84H6 ynfpIX1LmTNcvBuQxDLf20jQ46ZnzHZSA4dBejQneg/HoXDrPDtzpERWIDjKZ9FOy6H JHuN+Gs/UA4Wpg34GMUeMUQU4WI8c03UA7ikOAHs= Received: from localhost (p54AD4E51.dip0.t-ipconnect.de [84.173.78.81]) by mx.zohomail.com with SMTPS id 1587654675853393.2299752352243; Thu, 23 Apr 2020 08:11:15 -0700 (PDT) References: <16bc2796-7e78-a7a5-7962-1c220752904a@riseup.net> User-agent: mu4e 1.2.0; emacs 26.3 From: Ricardo Wurmus To: Naga Malleswari Subject: Re: bug#40779: Acknowledgement (Submission of CRAN Package Descriptions r-dcv r-stam r-grouped r-sgloptim r-awsmethods r-aws r-tea r-rcdd r-rxnat) In-reply-to: X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Thu, 23 Apr 2020 17:11:07 +0200 Message-ID: <87368ukzjo.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 40779 Cc: Danny Milosavljevic , =?utf-8?Q?G=C3=A1bor?= Boskovits , 40779@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi NagaMalli, thank you for your patches! Please run =E2=80=9C./pre-inst-env guix lint=E2=80=9D on each of the packag= es. Please pay special attention to the description and synopsis fields. The descriptions often contain sentence fragments =E2=80=93 we prefer to have complete sentences. Make sure that there are two spaces after end of sentence periods =E2=80=94 not zero spaces and not just one space either. For the synopses please only capitalize proper names (like =E2=80=9CBayes= =E2=80=9D) and the first word. CRAN packages use capitalization for all words, so we need to change that. Please also run etc/indent-code.el to fix the indentation. The importer doesn=E2=80=99t do the right thing because it doesn=E2=80=99t know about our conventions. Could you please send updated patches as a reply to this email thread? Thank you! -- Ricardo From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 23 16:45:33 2020 Received: (at 40779) by debbugs.gnu.org; 23 Apr 2020 20:45:33 +0000 Received: from localhost ([127.0.0.1]:55923 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRiiy-0008Rh-P0 for submit@debbugs.gnu.org; Thu, 23 Apr 2020 16:45:33 -0400 Received: from mx1.riseup.net ([198.252.153.129]:54892) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRiiu-0008RX-Vw for 40779@debbugs.gnu.org; Thu, 23 Apr 2020 16:45:31 -0400 Received: from bell.riseup.net (unknown [10.0.1.178]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (Client CN "*.riseup.net", Issuer "Sectigo RSA Domain Validation Secure Server CA" (not verified)) by mx1.riseup.net (Postfix) with ESMTPS id 497Tp54xvpzFfRr; Thu, 23 Apr 2020 13:45:17 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=riseup.net; s=squak; t=1587674728; bh=cWKG47g3+cMjMnc+taxcmbZWjPEbSQHbGvs2BIm18MU=; h=Subject:To:Cc:References:From:Date:In-Reply-To:From; b=mMIx/xlGMMR+V8mRy/EKmCxrhcbDBDeqcP7Aq0jnoY45OArpfZNu2ddk8U2FNfjFb ynFaLwOy6I5km7KiiB4EO/l6grFZsas2LrAbWYI4wjclknpEyCnhzWS9DWjit5bzuP 2zGrke/U2GkP1ORKZYLGBINpLkS6uKf9GMFXFciM= X-Riseup-User-ID: 2FD7A2022C284F392E41963D91853520B9E8C192295B0543DF6E9444DF42BB85 Received: from [127.0.0.1] (localhost [127.0.0.1]) by bell.riseup.net (Postfix) with ESMTPSA id 497Tp30WVhzJqZF; Thu, 23 Apr 2020 13:45:14 -0700 (PDT) Subject: [Version 2] : bug#40779: Acknowledgement (Submission of CRAN Package Descriptions r-dcv r-stam r-grouped r-sgloptim r-awsmethods r-aws r-tea r-rcdd r-rxnat) To: Ricardo Wurmus References: <16bc2796-7e78-a7a5-7962-1c220752904a@riseup.net> <87368ukzjo.fsf@elephly.net> From: Naga Malleswari Message-ID: Date: Fri, 24 Apr 2020 02:15:10 +0530 MIME-Version: 1.0 In-Reply-To: <87368ukzjo.fsf@elephly.net> Content-Type: multipart/mixed; boundary="------------FA544175A58990B4D04A8764" Content-Language: en-US X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 40779 Cc: Danny Milosavljevic , =?UTF-8?Q?G=c3=a1bor_Boskovits?= , 40779@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) This is a multi-part message in MIME format. --------------FA544175A58990B4D04A8764 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit Hi On 23/04/20 8:41 pm, Ricardo Wurmus wrote: > Hi NagaMalli, > > thank you for your patches! > > Please run “./pre-inst-env guix lint” on each of the packages. Yes i actually done lint adding all packages which i realized i have to do it individually. This took me so long to finish the edits. > Please > pay special attention to the description and synopsis fields. The > descriptions often contain sentence fragments – we prefer to have > complete sentences. Make sure that there are two spaces after end of > sentence periods — not zero spaces and not just one space either. I made the changes as per the suggestions. > For the synopses please only capitalize proper names (like “Bayes”) and > the first word. CRAN packages use capitalization for all words, so we > need to change that. > > Please also run etc/indent-code.el to fix the indentation. The importer > doesn’t do the right thing because it doesn’t know about our > conventions. I have done and it worked for individual packages > Could you please send updated patches as a reply to this email thread? > > Thank you! And lastly i built everything and sending the patches. Please review. > -- > Ricardo -- Regards NagaMalli --------------FA544175A58990B4D04A8764 Content-Type: text/x-patch; charset=UTF-8; name="0009-gnu-Add-r-rxnat.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0009-gnu-Add-r-rxnat.patch" >From bf3b617dd6c8b82d815cbab9c5454a10cb4a4c4f Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Fri, 24 Apr 2020 02:08:12 +0530 Subject: [PATCH 9/9] gnu: Add r-rxnat. * gnu/packages/cran.scm (r-rxnat): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b9a62aa932..ba635854c5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21377,3 +21377,30 @@ and as convex hull of set of points and rays. Also does linear programming and redundant generator elimination. All functions can use exact infinite-precision rational arithmetic.") (license license:gpl2))) + +(define-public r-rxnat + (package + (name "r-rxnat") + (version "1.0.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "Rxnat" version)) + (sha256 + (base32 + "12xcs2l6vn50bwzfmv60j1qahjw2npfm1a3yjhffcxzh6p8chwbg")))) + (properties + `((upstream-name . "Rxnat"))) + (build-system r-build-system) + (propagated-inputs + `(("r-httr" ,r-httr) + ("r-rcurl" ,r-rcurl))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://cran.r-project.org/web/packages/Rxnat") + (synopsis "Queries and extracts images from extensible neuroimaging archive toolkit") + (description + "This package allows communication with extensible neuroimaging archive +toolkit. Rxnat uses the XNAT REST API to perform data queries and download +images.") + (license license:gpl2))) -- 2.25.1 --------------FA544175A58990B4D04A8764 Content-Type: text/x-patch; charset=UTF-8; name="0008-gnu-Add-r-rcdd.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0008-gnu-Add-r-rcdd.patch" >From 7d8e09d4639408bb5c17264b2f4e42170828a80f Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Fri, 24 Apr 2020 02:03:20 +0530 Subject: [PATCH 8/9] gnu: Add r-rcdd. * gnu/packages/cran.scm (r-rcdd): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 44c47839bd..b9a62aa932 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21351,3 +21351,29 @@ methods for climate-growth model in the climate reconstruction from tree rings, including Sign Test statistic, Reduction of Error statistic, Product Mean Test, Durbin-Watson statistic etc.") (license license:gpl2))) + +(define-public r-rcdd + (package + (name "r-rcdd") + (version "1.2-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "rcdd" version)) + (sha256 + (base32 + "0pzpbqnlgzr240iici70278py5wnbbxkzlgn112f9wv5ga3riric")))) + (properties + `((upstream-name . "rcdd"))) + (build-system r-build-system) + (inputs + `(("gmp" ,gmp))) + (home-page "http://www.stat.umn.edu/geyer/rcdd/") + (synopsis "Computational Geometry") + (description + "This package converts back and forth between two representations of a +convex polytope: as solution of a set of linear equalities and inequalities +and as convex hull of set of points and rays. Also does linear programming +and redundant generator elimination. All functions can use exact +infinite-precision rational arithmetic.") + (license license:gpl2))) -- 2.25.1 --------------FA544175A58990B4D04A8764 Content-Type: text/x-patch; charset=UTF-8; name="0007-gnu-Add-r-dcv.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0007-gnu-Add-r-dcv.patch" >From a787d8cd05692aa735a8ec44107576d425544dfd Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Fri, 24 Apr 2020 01:58:15 +0530 Subject: [PATCH 7/9] gnu: Add r-dcv. * gnu/packages/cran.scm (r-dcv): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 156f1faba0..44c47839bd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21326,3 +21326,28 @@ under the coarsened at random assumption.") Analysis and Modelling, including Exploratory Spatio-Temporal Analysis and Inferred Spatio-Temporal Modelling.") (license license:gpl2+))) + +(define-public r-dcv + (package + (name "r-dcv") + (version "0.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "dcv" version)) + (sha256 + (base32 + "12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj")))) + (properties + `((upstream-name . "dcv"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lmtest" ,r-lmtest))) + (home-page "https://cran.r-project.org/web/packages/dcv") + (synopsis "Conventional cross-validation statistics for climate-growth model") + (description + "This package performs several conventional cross-validation statistical +methods for climate-growth model in the climate reconstruction from +tree rings, including Sign Test statistic, Reduction of Error statistic, +Product Mean Test, Durbin-Watson statistic etc.") + (license license:gpl2))) -- 2.25.1 --------------FA544175A58990B4D04A8764 Content-Type: text/x-patch; charset=UTF-8; name="0006-gnu-Add-r-stam.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0006-gnu-Add-r-stam.patch" >From f6ea5603e055016110f6e5878e16f3fa9dc757f1 Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Fri, 24 Apr 2020 01:51:33 +0530 Subject: [PATCH 6/9] gnu: Add r-stam. * gnu/packages/cran.scm (r-stam): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e913bac48a..156f1faba0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21301,3 +21301,28 @@ doParallel packages.") "This package provides regression models for grouped and coarse data, under the coarsened at random assumption.") (license license:gpl2+))) + +(define-public r-stam + (package + (name "r-stam") + (version "0.0-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "stam" version)) + (sha256 + (base32 + "1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv")))) + (properties + `((upstream-name . "stam"))) + (build-system r-build-system) + (propagated-inputs + `(("r-np" ,r-np) + ("r-sp" ,r-sp))) + (home-page "https://cran.r-project.org/web/packages/stam") + (synopsis "Spatio-Temporal analysis and modelling") + (description + "This package provide various methods to conduct Spatio-Temporal +Analysis and Modelling, including Exploratory Spatio-Temporal Analysis +and Inferred Spatio-Temporal Modelling.") + (license license:gpl2+))) -- 2.25.1 --------------FA544175A58990B4D04A8764 Content-Type: text/x-patch; charset=UTF-8; name="0005-gnu-Add-r-grouped.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0005-gnu-Add-r-grouped.patch" >From 0f5232af043d4e4f40a969b7082dc9f03db29c6e Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Fri, 24 Apr 2020 01:43:29 +0530 Subject: [PATCH 5/9] gnu: Add r-grouped. * gnu/packages/cran.scm (r-grouped): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 28dc2b86a8..e913bac48a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21278,3 +21278,26 @@ applicable to a broad class of loss functions. Use of parallel computing for cross validation and subsampling is supported through the foreach and doParallel packages.") (license license:gpl2+))) + +(define-public r-grouped + (package + (name "r-grouped") + (version "0.6-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "grouped" version)) + (sha256 + (base32 + "1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976")))) + (properties + `((upstream-name . "grouped"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass))) + (home-page "https://cran.r-project.org/web/packages/grouped") + (synopsis "Regression analysis of grouped and coarse data") + (description + "This package provides regression models for grouped and coarse data, +under the coarsened at random assumption.") + (license license:gpl2+))) -- 2.25.1 --------------FA544175A58990B4D04A8764 Content-Type: text/x-patch; charset=UTF-8; name="0004-gnu-Add-r-sgloptim.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0004-gnu-Add-r-sgloptim.patch" >From 3ca8422b32f99e2a0ddd80e57366aef82fd16942 Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Fri, 24 Apr 2020 01:37:05 +0530 Subject: [PATCH 4/9] gnu: Add r-sgloptim. * gnu/packages/cran.scm (r-sgloptim): New variable. --- gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 627201796f..28dc2b86a8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21242,3 +21242,39 @@ Propagation-Separation Approach to adaptive smoothing, the Intersecting Confidence Intervals (@dfn{ICI}), variational approaches and a non-local means filter.") (license license:gpl2+))) + +(define-public r-sgloptim + (package + (name "r-sgloptim") + (version "1.3.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "sglOptim" version)) + (sha256 + (base32 + "15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr")))) + (properties + `((upstream-name . "sglOptim"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-doparallel" ,r-doparallel) + ("r-foreach" ,r-foreach) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppprogress" ,r-rcppprogress))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/nielsrhansen/sglOptim") + (synopsis "Generic sparse group Lasso solver") + (description + "Fast generic solver for sparse group lasso optimization problems. +The loss (objective) function must be defined in a C++ module. The +optimization problem is solved using a coordinate gradient descent +algorithm. Convergence of the algorithm is established and the algorithm is +applicable to a broad class of loss functions. Use of parallel computing for +cross validation and subsampling is supported through the foreach and +doParallel packages.") + (license license:gpl2+))) -- 2.25.1 --------------FA544175A58990B4D04A8764 Content-Type: text/x-patch; charset=UTF-8; name="0003-gnu-Add-r-aws.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0003-gnu-Add-r-aws.patch" >From d3f583206b2e83b3e6737db507fd76093caea39d Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Fri, 24 Apr 2020 01:32:33 +0530 Subject: [PATCH 3/9] gnu: Add r-aws. * gnu/packages/cran.scm (r-aws): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 912a42190c..627201796f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21213,3 +21213,32 @@ is also implemented here.") support as needed in several packages like @code{aws},@code{adimpro}, @code{fmri},@code{dwi}.") (license license:gpl2+))) + +(define-public r-aws + (package + (name "r-aws") + (version "2.4-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "aws" version)) + (sha256 + (base32 + "1czlsy64nx6j7h1smgb561yyv3f98pwqwglk77yla4mx3fp14bvq")))) + (properties + `((upstream-name . "aws"))) + (build-system r-build-system) + (propagated-inputs + `(("r-awsmethods" ,r-awsmethods) + ("r-gsl" ,r-gsl))) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "http://www.wias-berlin.de/people/polzehl/") + (synopsis "Adaptive weights smoothing") + (description + "This package provide a collection of R-functions implementing +adaptive smoothing procedures in 1D, 2D and 3D. This includes the +Propagation-Separation Approach to adaptive smoothing, the Intersecting +Confidence Intervals (@dfn{ICI}), variational approaches and a non-local +means filter.") + (license license:gpl2+))) -- 2.25.1 --------------FA544175A58990B4D04A8764 Content-Type: text/x-patch; charset=UTF-8; name="0002-gnu-Add-r-awsmethods.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0002-gnu-Add-r-awsmethods.patch" >From d2668306231f0be731a32aaf87118b00f8aecf7f Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Fri, 24 Apr 2020 01:27:55 +0530 Subject: [PATCH 2/9] gnu: Add r-awsmethods. * gnu/packages/cran.scm (r-awsmethods): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2dba2b0a93..912a42190c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21191,3 +21191,25 @@ is the number of data in the tail. The third class is motivated by graphical inspection. In addition, a sequential testing procedure for GPD-GoF-tests is also implemented here.") (license license:gpl3))) + +(define-public r-awsmethods + (package + (name "r-awsmethods") + (version "1.1-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "awsMethods" version)) + (sha256 + (base32 + "0hbmrcpdyg15zg4rysscsmxpxlpy0dkxx2aa63qibq7l1k14v4sh")))) + (properties + `((upstream-name . "awsMethods"))) + (build-system r-build-system) + (home-page "http://www.wias-berlin.de/software/imaging/") + (synopsis "Class and methods definitions") + (description + "This package defines the method extract and provides @code{openMP} +support as needed in several packages like @code{aws},@code{adimpro}, +@code{fmri},@code{dwi}.") + (license license:gpl2+))) -- 2.25.1 --------------FA544175A58990B4D04A8764 Content-Type: text/x-patch; charset=UTF-8; name="0001-gnu-Add-r-tea.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="0001-gnu-Add-r-tea.patch" >From 717f18057715559f4c847b3a7171a7e5095b7418 Mon Sep 17 00:00:00 2001 From: Naga Malleswari Date: Fri, 24 Apr 2020 01:23:25 +0530 Subject: [PATCH 1/9] gnu: Add r-tea. * gnu/packages/cran.scm (r-tea): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 70cb7cc700..2dba2b0a93 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21162,3 +21162,32 @@ evaluated interactively.") Bayes factors, posterior model probabilities, and normalizing constants in general, via different versions of bridge sampling.") (license license:gpl2+))) + +(define-public r-tea + (package + (name "r-tea") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "tea" version)) + (sha256 + (base32 + "0ql7lrxk0ihm49kqsvz79ig8i54rwiy9nxav4v9hy72j9kj5bgjn")))) + (properties + `((upstream-name . "tea"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix))) + (home-page "https://cran.r-project.org/web/packages/tea") + (synopsis "Threshold estimation approaches") + (description + "This package provide different approaches for selecting the threshold +in generalized Pareto distributions. Most of them are based on minimizing the +AMSE-criterion or atleast by reducing the bias of the assumed GPD-model. +Others are heuristically motivated by searching for stable sample paths, i.e. +a nearly constant region of the tail index estimator with respect to k, which +is the number of data in the tail. The third class is motivated by graphical +inspection. In addition, a sequential testing procedure for GPD-GoF-tests +is also implemented here.") + (license license:gpl3))) -- 2.25.1 --------------FA544175A58990B4D04A8764-- From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 24 10:00:52 2020 Received: (at 40779-done) by debbugs.gnu.org; 24 Apr 2020 14:00:52 +0000 Received: from localhost ([127.0.0.1]:57562 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRysu-0001Xn-IP for submit@debbugs.gnu.org; Fri, 24 Apr 2020 10:00:52 -0400 Received: from sender4-of-o53.zoho.com ([136.143.188.53]:21365) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jRyst-0001XZ-8K for 40779-done@debbugs.gnu.org; Fri, 24 Apr 2020 10:00:51 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1587736847; cv=none; d=zohomail.com; s=zohoarc; b=OpMx7q+c7q626NkSsSpcEf1laEreujKnf/Y2uP1FYALoK7YFTfpS15cy1kZO+jaoLX2eSUawXw0NUIpJ68/9faSZfm79fiBO08hz4hQRagbkDSbjniyg/H7fmPpI8RYxgQH4fdihoEytHy6o2vQocBaV0v7XoGOTcTcQ9pIMMJo= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1587736847; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=oYa6J0ml0aO8PCzRtKan+farq+VgjUDC7BmvSOXugXg=; b=HFiZs1KneRD8UvltohBBNTSd/ZDw6X86f63ORdiPd+uOIjeJVwasxSmoUAuPPrOyUzUGstbjjphRiZ7QjjuvwEOzozVVnEERlyTbNdbqa6TAcKhGnguO100eloLZRdonb2Z1VL9MbInYvLn56KqGU1GvRC/lB3PZGiSAfhWwWlI= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1587736847; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=oYa6J0ml0aO8PCzRtKan+farq+VgjUDC7BmvSOXugXg=; b=UAcCXCZPglVWfqzYjB6AsLjLK70ItwDwNspcNcNGLrZ06mlmHXquz2wGVCxabFAD wcrb7l3G/k6hlRvBzGUx6nJzoIBjh5bA9RfIPpAC8km3weKvFJIxYDVAnMwd5j1Kod3 lSMRE7IwJWiJFqe0tNRoxE0x+Is4ugETEmoeYcRM= Received: from localhost (p54AD4E15.dip0.t-ipconnect.de [84.173.78.21]) by mx.zohomail.com with SMTPS id 1587736842665242.0143263497962; Fri, 24 Apr 2020 07:00:42 -0700 (PDT) References: <16bc2796-7e78-a7a5-7962-1c220752904a@riseup.net> <87368ukzjo.fsf@elephly.net> User-agent: mu4e 1.2.0; emacs 26.3 From: Ricardo Wurmus To: Naga Malleswari Subject: Re: [Version 2] : bug#40779: Acknowledgement (Submission of CRAN Package Descriptions r-dcv r-stam r-grouped r-sgloptim r-awsmethods r-aws r-tea r-rcdd r-rxnat) In-reply-to: X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Fri, 24 Apr 2020 16:00:39 +0200 Message-ID: <87zhb1j854.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 40779-done Cc: Danny Milosavljevic , =?utf-8?Q?G=C3=A1bor?= Boskovits , 40779-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, thank you for the updated patches. I applied all of them with a number of changes: * the indentation of a number of patches was incorrect and had to be adjusted * there were a few typos and spacing issues (e.g. missing space after comma) in descriptions * I changed the home page of one package from the author=E2=80=99s home pag= e to the package page on CRAN * a synopsis missed an important word * I used HTTPS were possible Thanks again! -- Ricardo From unknown Fri Jun 20 18:10:39 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 23 May 2020 11:24:07 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator