GNU bug report logs - #40747
New package: r-mstate

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Leo Famulari <leo <at> famulari.name>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#40747: closed (New package: r-mstate)
Date: Fri, 29 May 2020 03:46:02 +0000

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Your message dated Thu, 28 May 2020 23:45:05 -0400
with message-id <20200529034505.GD28388 <at> jasmine.lan>
and subject line Re: [bug#40747] New package: r-mstate
has caused the debbugs.gnu.org bug report #40747,
regarding New package: r-mstate
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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40747: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=40747
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From: Eric Brown <ecbrown <at> ericcbrown.com>
To: guix-patches <at> gnu.org
Subject: New package: r-mstate
Date: Tue, 21 Apr 2020 11:29:04 -0500

[Message part 3 (text/plain, inline)]

Dear Guix:

Please see attached diff for r-mstate.

Best regards,
Eric

[0001-gnu-Add-r-mstate.patch (text/x-patch, inline)]

From 69141a3f79452e9a022b20e1b05b565e819386a2 Mon Sep 17 00:00:00 2001
From: Eric Brown <ecbrown <at> ericcbrown.com>
Date: Tue, 21 Apr 2020 11:20:16 -0500
Subject: [PATCH] gnu: Add r-mstate.

* gnu/packages/cran.scm (r-mstate): New variable.
---
 gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 70cb7cc700..935442b4ef 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -21162,3 +21162,29 @@ evaluated interactively.")
 Bayes factors, posterior model probabilities, and normalizing constants in
 general, via different versions of bridge sampling.")
     (license license:gpl2+)))
+
+(define-public r-mstate
+  (package
+    (name "r-mstate")
+    (version "0.2.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "mstate" version))
+       (sha256
+        (base32
+         "0qnhivbibzss8yfsg44cvbf73n4jj4i28rbdysl88g14ig5sabgv"))))
+    (properties `((upstream-name . "mstate")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-rcolorbrewer" ,r-rcolorbrewer)
+       ("r-survival" ,r-survival)))
+    (home-page
+     "https://www.lumc.nl/org/bds/research/medische-statistiek/survival-analysis/")
+    (synopsis
+     "Data Preparation, Estimation and Prediction in Multi-State Models")
+    (description
+     "Contains functions for data preparation, descriptives, hazard estimation
+and prediction with Aalen-Johansen or simulation in competing risks and
+multi-state models.")
+    (license license:gpl2+)))
-- 
2.26.2

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From: Leo Famulari <leo <at> famulari.name>
To: Eric Brown <ecbrown <at> ericcbrown.com>
Cc: 40747-done <at> debbugs.gnu.org
Subject: Re: [bug#40747] New package: r-mstate
Date: Thu, 28 May 2020 23:45:05 -0400

On Tue, Apr 21, 2020 at 11:29:04AM -0500, Eric Brown wrote:
> Please see attached diff for r-mstate.

Thanks! Pushed as 3bafa88b40483040e5f8034561590cadd43514c8

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