From unknown Sat Jun 21 12:28:41 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#40747] New package: r-mstate Resent-From: Eric Brown Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 21 Apr 2020 16:30:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 40747 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: 40747@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.158748654924814 (code B ref -1); Tue, 21 Apr 2020 16:30:02 +0000 Received: (at submit) by debbugs.gnu.org; 21 Apr 2020 16:29:09 +0000 Received: from localhost ([127.0.0.1]:50663 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jQvll-0006SA-Ej for submit@debbugs.gnu.org; Tue, 21 Apr 2020 12:29:09 -0400 Received: from lists.gnu.org ([209.51.188.17]:55043) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jQvlj-0006S2-FS for submit@debbugs.gnu.org; Tue, 21 Apr 2020 12:29:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:55692) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQvlj-0002yn-0k for guix-patches@gnu.org; Tue, 21 Apr 2020 12:29:07 -0400 X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,KHOP_DYNAMIC, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.90_1) (envelope-from ) id 1jQvli-0001RK-9D for guix-patches@gnu.org; Tue, 21 Apr 2020 12:29:06 -0400 Received: from 216-80-121-173.s13.demp-ubr2.chi-demp.il.static.cable.rcncustomer.com ([216.80.121.173]:60346 helo=ericcbrown.com) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQvlh-0001Qu-Qo for guix-patches@gnu.org; Tue, 21 Apr 2020 12:29:05 -0400 Received: from localhost (unknown [192.168.1.1]) by ericcbrown.com (Postfix) with ESMTPSA id 0B9D1498E9A4 for ; Tue, 21 Apr 2020 11:29:05 -0500 (CDT) From: Eric Brown Mail-reply-to: Eric Brown Mail-followup-to: Eric Brown Date: Tue, 21 Apr 2020 11:29:04 -0500 Message-ID: <877dy8reen.fsf@ericcbrown.com> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.3 (gnu/linux) MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" Received-SPF: none client-ip=216.80.121.173; envelope-from=ecbrown@ericcbrown.com; helo=ericcbrown.com X-detected-operating-system: by eggs.gnu.org: First seen = 2020/04/21 12:28:07 X-ACL-Warn: Detected OS = Mac OS X [generic] [fuzzy] X-Received-From: 216.80.121.173 X-Spam-Score: -0.7 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) --=-=-= Content-Type: text/plain Dear Guix: Please see attached diff for r-mstate. Best regards, Eric --=-=-= Content-Type: text/x-patch Content-Disposition: inline; filename=0001-gnu-Add-r-mstate.patch Content-Description: r-mstate >From 69141a3f79452e9a022b20e1b05b565e819386a2 Mon Sep 17 00:00:00 2001 From: Eric Brown Date: Tue, 21 Apr 2020 11:20:16 -0500 Subject: [PATCH] gnu: Add r-mstate. * gnu/packages/cran.scm (r-mstate): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 70cb7cc700..935442b4ef 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21162,3 +21162,29 @@ evaluated interactively.") Bayes factors, posterior model probabilities, and normalizing constants in general, via different versions of bridge sampling.") (license license:gpl2+))) + +(define-public r-mstate + (package + (name "r-mstate") + (version "0.2.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "mstate" version)) + (sha256 + (base32 + "0qnhivbibzss8yfsg44cvbf73n4jj4i28rbdysl88g14ig5sabgv")))) + (properties `((upstream-name . "mstate"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-survival" ,r-survival))) + (home-page + "https://www.lumc.nl/org/bds/research/medische-statistiek/survival-analysis/") + (synopsis + "Data Preparation, Estimation and Prediction in Multi-State Models") + (description + "Contains functions for data preparation, descriptives, hazard estimation +and prediction with Aalen-Johansen or simulation in competing risks and +multi-state models.") + (license license:gpl2+))) -- 2.26.2 --=-=-=-- From unknown Sat Jun 21 12:28:41 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Eric Brown Subject: bug#40747: closed (Re: [bug#40747] New package: r-mstate) Message-ID: References: <20200529034505.GD28388@jasmine.lan> <877dy8reen.fsf@ericcbrown.com> X-Gnu-PR-Message: they-closed 40747 X-Gnu-PR-Package: guix-patches Reply-To: 40747@debbugs.gnu.org Date: Fri, 29 May 2020 03:46:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1590723962-28257-1" This is a multi-part message in MIME format... ------------=_1590723962-28257-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #40747: New package: r-mstate which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 40747@debbugs.gnu.org. --=20 40747: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D40747 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1590723962-28257-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 40747-done) by debbugs.gnu.org; 29 May 2020 03:45:15 +0000 Received: from localhost ([127.0.0.1]:53544 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jeVxL-0007Ke-5V for submit@debbugs.gnu.org; Thu, 28 May 2020 23:45:15 -0400 Received: from wout2-smtp.messagingengine.com ([64.147.123.25]:35837) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jeVxJ-0007KR-SH for 40747-done@debbugs.gnu.org; Thu, 28 May 2020 23:45:14 -0400 Received: from compute2.internal (compute2.nyi.internal [10.202.2.42]) by mailout.west.internal (Postfix) with ESMTP id 1E4286C2; Thu, 28 May 2020 23:45:08 -0400 (EDT) Received: from mailfrontend2 ([10.202.2.163]) by compute2.internal (MEProxy); Thu, 28 May 2020 23:45:08 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=famulari.name; h=date:from:to:cc:subject:message-id:references:mime-version :content-type:in-reply-to; s=mesmtp; bh=O5iaPxy42bWAB8lda+m+bPoG DR5kk5NkFbmEzhpTFfk=; b=yPVg/m+h1dTzINygk0RCJnHX6+7yDllJrwGgDEgf CUAJPMzSJIlgLykBca1RwxRCmH5G5ml1Jb8wlwV24ANNMHnzhW5cAYQRztgdg3ff bnkwHfknlEae7AxvaY+SEOoenp0x17pAu4f/Uyx8m1Frp+wIphxnTCIGXD9w7cBa Yj0= DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:date:from:in-reply-to :message-id:mime-version:references:subject:to:x-me-proxy :x-me-proxy:x-me-sender:x-me-sender:x-sasl-enc; s=fm2; bh=O5iaPx y42bWAB8lda+m+bPoGDR5kk5NkFbmEzhpTFfk=; b=gb70NUwDz+vssSebVEHEsO 5hN85QQdLamiD4/Ei4diDteO6suQS3xE6a1CvUUURzLjVABBzoGsAUlmr/2YyPC1 MQep/g/Jwxw07ueaQnROHi+fgyp4NREBewgiP/Cva9S5zRSRtLqknLu1hunwtlxS m4YTpw0cOIVoMdHEM6Pdt853BLSquepfO7RQA3zO8kau6oexc3m16dq5vQCfRmdS +AVkyCi6CSfhxa5jFc1fqAO5AqRcbmUpDdM0zn35vrqHTkHs/vb1bGUTVyuPaVk4 im0XoT5c/7N+axr89hNGfULZa+hViWJJUjKBrqKPMxot3CrfqwJguH4L9sN6t4Yw == X-ME-Sender: X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgeduhedruddvjedgieelucetufdoteggodetrfdotf fvucfrrhhofhhilhgvmecuhfgrshhtofgrihhlpdfqfgfvpdfurfetoffkrfgpnffqhgen uceurghilhhouhhtmecufedttdenucesvcftvggtihhpihgvnhhtshculddquddttddmne cujfgurhepfffhvffukfhfgggtuggjsehttdertddttddvnecuhfhrohhmpefnvghoucfh rghmuhhlrghrihcuoehlvghosehfrghmuhhlrghrihdrnhgrmhgvqeenucggtffrrghtth gvrhhnpeeukeektdffvddtudegjeegtdevhfeufeeivdejiedtieegtdevjedvjeehffev gfenucfkphepjeeirdduvdegrddufeekrdeifeenucevlhhushhtvghrufhiiigvpedune curfgrrhgrmhepmhgrihhlfhhrohhmpehlvghosehfrghmuhhlrghrihdrnhgrmhgv X-ME-Proxy: Received: from localhost (c-76-124-138-63.hsd1.pa.comcast.net [76.124.138.63]) by mail.messagingengine.com (Postfix) with ESMTPA id 7229530614FA; Thu, 28 May 2020 23:45:07 -0400 (EDT) Date: Thu, 28 May 2020 23:45:05 -0400 From: Leo Famulari To: Eric Brown Subject: Re: [bug#40747] New package: r-mstate Message-ID: <20200529034505.GD28388@jasmine.lan> References: <877dy8reen.fsf@ericcbrown.com> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: <877dy8reen.fsf@ericcbrown.com> X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 40747-done Cc: 40747-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) On Tue, Apr 21, 2020 at 11:29:04AM -0500, Eric Brown wrote: > Please see attached diff for r-mstate. Thanks! Pushed as 3bafa88b40483040e5f8034561590cadd43514c8 ------------=_1590723962-28257-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 21 Apr 2020 16:29:09 +0000 Received: from localhost ([127.0.0.1]:50663 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jQvll-0006SA-Ej for submit@debbugs.gnu.org; Tue, 21 Apr 2020 12:29:09 -0400 Received: from lists.gnu.org ([209.51.188.17]:55043) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jQvlj-0006S2-FS for submit@debbugs.gnu.org; Tue, 21 Apr 2020 12:29:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:55692) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQvlj-0002yn-0k for guix-patches@gnu.org; Tue, 21 Apr 2020 12:29:07 -0400 X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,KHOP_DYNAMIC, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.90_1) (envelope-from ) id 1jQvli-0001RK-9D for guix-patches@gnu.org; Tue, 21 Apr 2020 12:29:06 -0400 Received: from 216-80-121-173.s13.demp-ubr2.chi-demp.il.static.cable.rcncustomer.com ([216.80.121.173]:60346 helo=ericcbrown.com) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQvlh-0001Qu-Qo for guix-patches@gnu.org; Tue, 21 Apr 2020 12:29:05 -0400 Received: from localhost (unknown [192.168.1.1]) by ericcbrown.com (Postfix) with ESMTPSA id 0B9D1498E9A4 for ; Tue, 21 Apr 2020 11:29:05 -0500 (CDT) From: Eric Brown To: guix-patches@gnu.org Subject: New package: r-mstate Mail-reply-to: Eric Brown Mail-followup-to: Eric Brown Date: Tue, 21 Apr 2020 11:29:04 -0500 Message-ID: <877dy8reen.fsf@ericcbrown.com> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.3 (gnu/linux) MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" Received-SPF: none client-ip=216.80.121.173; envelope-from=ecbrown@ericcbrown.com; helo=ericcbrown.com X-detected-operating-system: by eggs.gnu.org: First seen = 2020/04/21 12:28:07 X-ACL-Warn: Detected OS = Mac OS X [generic] [fuzzy] X-Received-From: 216.80.121.173 X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) --=-=-= Content-Type: text/plain Dear Guix: Please see attached diff for r-mstate. Best regards, Eric --=-=-= Content-Type: text/x-patch Content-Disposition: inline; filename=0001-gnu-Add-r-mstate.patch Content-Description: r-mstate >From 69141a3f79452e9a022b20e1b05b565e819386a2 Mon Sep 17 00:00:00 2001 From: Eric Brown Date: Tue, 21 Apr 2020 11:20:16 -0500 Subject: [PATCH] gnu: Add r-mstate. * gnu/packages/cran.scm (r-mstate): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 70cb7cc700..935442b4ef 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21162,3 +21162,29 @@ evaluated interactively.") Bayes factors, posterior model probabilities, and normalizing constants in general, via different versions of bridge sampling.") (license license:gpl2+))) + +(define-public r-mstate + (package + (name "r-mstate") + (version "0.2.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "mstate" version)) + (sha256 + (base32 + "0qnhivbibzss8yfsg44cvbf73n4jj4i28rbdysl88g14ig5sabgv")))) + (properties `((upstream-name . "mstate"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-survival" ,r-survival))) + (home-page + "https://www.lumc.nl/org/bds/research/medische-statistiek/survival-analysis/") + (synopsis + "Data Preparation, Estimation and Prediction in Multi-State Models") + (description + "Contains functions for data preparation, descriptives, hazard estimation +and prediction with Aalen-Johansen or simulation in competing risks and +multi-state models.") + (license license:gpl2+))) -- 2.26.2 --=-=-=-- ------------=_1590723962-28257-1--