From unknown Mon Jun 16 23:48:14 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#40265 <40265@debbugs.gnu.org> To: bug#40265 <40265@debbugs.gnu.org> Subject: Status: [PATCH] gnu: python-intervaltree: Update to 3.0.2. Reply-To: bug#40265 <40265@debbugs.gnu.org> Date: Tue, 17 Jun 2025 06:48:14 +0000 retitle 40265 [PATCH] gnu: python-intervaltree: Update to 3.0.2. reassign 40265 guix-patches submitter 40265 Jakub K=C4=85dzio=C5=82ka severity 40265 normal tag 40265 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 27 19:51:44 2020 Received: (at submit) by debbugs.gnu.org; 27 Mar 2020 23:51:44 +0000 Received: from localhost ([127.0.0.1]:33527 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jHylM-0008IW-D3 for submit@debbugs.gnu.org; Fri, 27 Mar 2020 19:51:44 -0400 Received: from lists.gnu.org ([209.51.188.17]:48418) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jHylK-0008IP-RN for submit@debbugs.gnu.org; Fri, 27 Mar 2020 19:51:43 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:33592) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jHylJ-0006Z6-Jh for guix-patches@gnu.org; Fri, 27 Mar 2020 19:51:42 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.8 required=5.0 tests=BAYES_50,RCVD_IN_DNSWL_NONE, URIBL_BLOCKED autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1jHylH-00041v-CJ for guix-patches@gnu.org; Fri, 27 Mar 2020 19:51:41 -0400 Received: from pat.zlotemysli.pl ([37.59.186.212]:50670) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1jHylF-0003rF-Dk for guix-patches@gnu.org; Fri, 27 Mar 2020 19:51:38 -0400 Received: (qmail 24180 invoked by uid 1009); 28 Mar 2020 00:51:28 +0100 Received: from 188.123.215.55 (kuba@kadziolka.net@188.123.215.55) by pat (envelope-from , uid 1002) with qmail-scanner-2.08st (clamdscan: 0.98.6/25763. spamassassin: 3.4.0. perlscan: 2.08st. Clear:RC:1(188.123.215.55):. Processed in 0.00948 secs); 27 Mar 2020 23:51:28 -0000 Received: from unknown (HELO localhost.localdomain) (kuba@kadziolka.net@188.123.215.55) by pat.zlotemysli.pl with AES256-SHA encrypted SMTP; 28 Mar 2020 00:51:28 +0100 From: =?UTF-8?q?Jakub=20K=C4=85dzio=C5=82ka?= To: guix-patches@gnu.org Subject: [PATCH] gnu: python-intervaltree: Update to 3.0.2. Date: Sat, 28 Mar 2020 00:51:25 +0100 Message-Id: <20200327235125.3250-1-kuba@kadziolka.net> X-Mailer: git-send-email 2.26.0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-detected-operating-system: by eggs.gnu.org: GNU/Linux 3.x X-Received-From: 37.59.186.212 X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: submit Cc: rekado@elephly.net X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) * gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.2. [arguments]: Don't skip the tests. --- It turns out I need python-intervaltree 3.0 as a dependency for one of the packages I'm working on. Cc: Ricardo - you added python-pygenometracks, the only dependent. Could you re-test it, just in case? gnu/packages/bioinformatics.scm | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index da3fe1d2c9..a8e4c830ae 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16,6 +16,7 @@ ;;; Copyright © 2019 Brian Leung ;;; Copyright © 2019 Brett Gilio ;;; Copyright © 2020 Björn Höfling +;;; Copyright © 2020 Jakub Kądziołka ;;; ;;; This file is part of GNU Guix. ;;; @@ -13548,17 +13549,22 @@ allowing the insertion of arbitrary types into the tree.") (define-public python-intervaltree (package (name "python-intervaltree") - (version "2.1.0") + (version "3.0.2") (source (origin (method url-fetch) (uri (pypi-uri "intervaltree" version)) (sha256 (base32 - "02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc")))) + "0wz234g6irlm4hivs2qzmnywk0ss06ckagwh15nflkyb3p462kyb")))) (build-system python-build-system) - ;; FIXME: error when collecting tests - (arguments '(#:tests? #f)) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'import-mismatch-error-workaround + (lambda _ + (setenv "PY_IGNORE_IMPORTMISMATCH" "1") + #t))))) (propagated-inputs `(("python-sortedcontainers" ,python-sortedcontainers))) (native-inputs -- 2.26.0 From debbugs-submit-bounces@debbugs.gnu.org Tue Mar 31 10:58:55 2020 Received: (at 40265) by debbugs.gnu.org; 31 Mar 2020 14:58:55 +0000 Received: from localhost ([127.0.0.1]:36794 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jJILu-0006bU-W7 for submit@debbugs.gnu.org; Tue, 31 Mar 2020 10:58:55 -0400 Received: from out1-smtp.messagingengine.com ([66.111.4.25]:51303) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jJILs-0006bF-Av for 40265@debbugs.gnu.org; Tue, 31 Mar 2020 10:58:53 -0400 Received: from compute4.internal (compute4.nyi.internal [10.202.2.44]) by mailout.nyi.internal (Postfix) with ESMTP id 2E0365C05B1; Tue, 31 Mar 2020 10:58:46 -0400 (EDT) Received: from mailfrontend2 ([10.202.2.163]) by compute4.internal (MEProxy); Tue, 31 Mar 2020 10:58:46 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=fastmail.com; h= from:to:cc:subject:in-reply-to:references:date:message-id :mime-version:content-type; s=fm2; bh=9w0LY5hliiDRfoBhOIS+/VMBuO iOucmhEQ5VqqJl9ec=; b=xTlmI0z6+rne0yPCvIR20GL5d1EzgqHIBTwiHUpMkE fYFFOYx4ryoSbls6t40wzdMv7d50wzM49KBEZkoU8ip7P5dR0KzWnMhZ1nO6JEk9 MuXSg0rZpGpyI+o+poPnDJe7RETiYOv4X+9uzUWw+3zXaEL2GEFDu19s9R5hVYoi JHaTfkW5l8hA1x1XxCB6uzRjWkfZe8a18nM6AmZ8DedWt8fkwEbHu/yRs3LMdgMo DAippW78vWiSB7V+s6D93NfGKCRi2iC7y2M2+vdLALOmqrA9JLz7GL7qpzfgjyEy bLSue07BPlxY6v1QiQHaDA5rlfaD0n8y3wbxLlV4wIlw== DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:date:from:in-reply-to :message-id:mime-version:references:subject:to:x-me-proxy :x-me-proxy:x-me-sender:x-me-sender:x-sasl-enc; s=fm2; bh=9w0LY5 hliiDRfoBhOIS+/VMBuOiOucmhEQ5VqqJl9ec=; b=rmOSgWgz+3jjjJD6H1CGJY 8CQkN+ZcXdGKR8zK2sFPk02u5lDoTyOLtBCqiV0C13ONXa2dStwFQzKeX4xNmK54 guXkjMPdkOnq38DfD+gqyHQKhlC2sR5QA114kyzrrikavgVLdJnJCKm+oSP7g48n qtR0kjGDuv1LniQyyAv33P17zgYm0fhhk5Tu88prl4EZjKB/PuqzAwwv9LmJa3Dv ATOh6Qq+Pl7hBIc7jcAAKC+AhvRAmhFLBBIybQXWxJwgFhGotogpq4qXqkrnWotq FyGVCoRjvIfwiVNWSR9qjfkym5khAY3bY2c1j9jmRPfVQDubvmGH0Abdhk9ErLGQ == X-ME-Sender: X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgeduhedrtddtgdeglecutefuodetggdotefrodftvf curfhrohhfihhlvgemucfhrghsthforghilhdpqfgfvfdpuffrtefokffrpgfnqfghnecu uegrihhlohhuthemuceftddtnecunecujfgurhephffvufgjfhgffffkgggtsehgtderre dtreejnecuhfhrohhmpeforghrihhushcuuegrkhhkvgcuoehmsggrkhhkvgesfhgrshht mhgrihhlrdgtohhmqeenucfkphepkeegrddvtddvrdeikedrjeehnecuvehluhhsthgvrh fuihiivgeptdenucfrrghrrghmpehmrghilhhfrhhomhepmhgsrghkkhgvsehfrghsthhm rghilhdrtghomh X-ME-Proxy: Received: from localhost (ti0006q161-2604.bb.online.no [84.202.68.75]) by mail.messagingengine.com (Postfix) with ESMTPA id 69671306CB7B; Tue, 31 Mar 2020 10:58:45 -0400 (EDT) From: Marius Bakke To: Jakub =?utf-8?B?S8SFZHppb8WCa2E=?= , 40265@debbugs.gnu.org Subject: Re: [bug#40265] [PATCH] gnu: python-intervaltree: Update to 3.0.2. In-Reply-To: <20200327235125.3250-1-kuba@kadziolka.net> References: <20200327235125.3250-1-kuba@kadziolka.net> User-Agent: Notmuch/0.29.3 (https://notmuchmail.org) Emacs/26.3 (x86_64-pc-linux-gnu) Date: Tue, 31 Mar 2020 16:58:43 +0200 Message-ID: <87sghotvto.fsf@devup.no> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 40265 Cc: rekado@elephly.net X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Jakub K=C4=85dzio=C5=82ka writes: > + (arguments > + `(#:phases > + (modify-phases %standard-phases > + (add-before 'check 'import-mismatch-error-workaround > + (lambda _ > + (setenv "PY_IGNORE_IMPORTMISMATCH" "1") > + #t))))) Can you add a comment about what this does? Also, I guess this package should be moved out of bioinformatics.scm, assuming the software you are packaging is not bioinfo-related? --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEu7At3yzq9qgNHeZDoqBt8qM6VPoFAl6DWqMACgkQoqBt8qM6 VPoRRgf/R7/qeNNmlOMyu2xQObUyDsibHUdYoXSiAxjenDvzCZJXQVSHaWztlZ8G aXBp7vXgZ+U/gcvN/yOPDTfHsS0a962wjkR7g2oLsU6OS95CtzvJdipxrAQ3GkgU KrIgCZrMUOMlf95id9kUvcyi6EB8RjkvqoWV2SMqYkEB2RNGdyBGw9NL+SrIkzq8 F32AiCiF2ygUS35ydNVqVgARceXnRR60lNayzU5le6nbMBupWgCoGNSCQTQycOZ7 8pM2I5Yq/+1Hl4F/UZU3S1LAS3xfG4+2WCHKXNU4VOhFKavnXaQ2l42XepfNQ2Vo Wi1rFzyrMxwNV1Oml9gUpuOuMK6S1w== =KOeR -----END PGP SIGNATURE----- --=-=-=-- From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 01 01:48:33 2020 Received: (at 40265) by debbugs.gnu.org; 1 Apr 2020 05:48:33 +0000 Received: from localhost ([127.0.0.1]:37345 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jJWEr-0001dy-A9 for submit@debbugs.gnu.org; Wed, 01 Apr 2020 01:48:33 -0400 Received: from flashner.co.il ([178.62.234.194]:46366) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jJWEo-0001d9-DL for 40265@debbugs.gnu.org; Wed, 01 Apr 2020 01:48:32 -0400 Received: from localhost (unknown [141.226.9.17]) by flashner.co.il (Postfix) with ESMTPSA id 5419F4020F; Wed, 1 Apr 2020 05:48:24 +0000 (UTC) Date: Wed, 1 Apr 2020 08:47:51 +0300 From: Efraim Flashner To: Marius Bakke Subject: Re: [bug#40265] [PATCH] gnu: python-intervaltree: Update to 3.0.2. Message-ID: <20200401054751.GM5436@E5400> References: <20200327235125.3250-1-kuba@kadziolka.net> <87sghotvto.fsf@devup.no> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="LJm8egi4vkexsie5" Content-Disposition: inline In-Reply-To: <87sghotvto.fsf@devup.no> X-PGP-Key-ID: 0x41AAE7DCCA3D8351 X-PGP-Key: https://flashner.co.il/~efraim/efraim_flashner.asc X-PGP-Fingerprint: A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 40265 Cc: Jakub =?utf-8?B?S8SFZHppb8WCa2E=?= , rekado@elephly.net, 40265@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --LJm8egi4vkexsie5 Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On Tue, Mar 31, 2020 at 04:58:43PM +0200, Marius Bakke wrote: > Jakub K=C4=85dzio=C5=82ka writes: >=20 > > + (arguments > > + `(#:phases > > + (modify-phases %standard-phases > > + (add-before 'check 'import-mismatch-error-workaround > > + (lambda _ > > + (setenv "PY_IGNORE_IMPORTMISMATCH" "1") > > + #t))))) >=20 > Can you add a comment about what this does? It seems to me there is some import mismatch and this is a workaround for it. I assume it's related to deprecated python naming/modules and may break on a python upgrade. IMO the phase name is descriptive enough, and I assume if we were to remove it then it'd make a lot more sense after seeing the error message. >=20 > Also, I guess this package should be moved out of bioinformatics.scm, > assuming the software you are packaging is not bioinfo-related? --=20 Efraim Flashner =D7=90=D7=A4=D7=A8=D7=99=D7=9D = =D7=A4=D7=9C=D7=A9=D7=A0=D7=A8 GPG key =3D A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted --LJm8egi4vkexsie5 Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAABCgAdFiEEoov0DD5VE3JmLRT3Qarn3Mo9g1EFAl6EKwEACgkQQarn3Mo9 g1HXAA/+OPnyhksaNvO3CkFnIFojcaAxXZHMjfYwdgDLhKVpguQufIXFvcXfC9Z0 e7DkO0VX1zk3GJx8bIkWmXQIl/EzSZdQ47kTzUGj88Y6vjKW9qF2/NgFi9aAKVgd ftoMnDfcE0JCMrjb8XZ/ux/G9jmfBf6QHl15jk3rQS3FtlYT4wB6IidOHC3fPBec xmmi8k5IfAYIooh1qybRPi/S6GacBNE0mr1oNzHXrPivdIHkEBbUl//CSg3GwVL4 BRhv0v63dsq5RBWW4SggXaHk5b4K3ql8qVhKzwrsYESxj3nrPkFgj8Qc22WMrAEN /H1rFdwCkY6KUWA/hZzuu4SK7dspV5ylcJkT/ec0ec7nzZttVeehpMb0xq5+m8Gw M9XdpbW3aRyDlLOO38ZUOX3cJ8j1WBF6XKfB664FPyXX7iCgSpF3ILcOoiYNcJ1n +3mWBusXulbNXsW0C6azIEfwZzYw63vrFCJRlgz0XTtSYawL2Wwyq/ieuELWAwPW B8zF3eWI63NYEMXE2YP8PCoME0fvsgYWW9xMUJbUkhS4PwIRCF4uAt//Y6PET62V AcL8kRm5xSGwrM2vPWse3iJZIfH0vj+js7uZTb9/l5gDfqpVCo+d1aiAmnyqAgW6 qg9MoCBv6mxJNM8i8GeDD+jGOfHI7Q3PQQNWu0h5/ALmVB+5PgI= =HuKO -----END PGP SIGNATURE----- --LJm8egi4vkexsie5-- From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 01 10:24:58 2020 Received: (at 40265) by debbugs.gnu.org; 1 Apr 2020 14:24:59 +0000 Received: from localhost ([127.0.0.1]:38535 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jJeIc-0006Og-IV for submit@debbugs.gnu.org; Wed, 01 Apr 2020 10:24:58 -0400 Received: from pat.zlotemysli.pl ([37.59.186.212]:60720) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jJeIa-0006ON-Vg for 40265@debbugs.gnu.org; Wed, 01 Apr 2020 10:24:57 -0400 Received: (qmail 25833 invoked by uid 1009); 1 Apr 2020 16:24:54 +0200 Received: from 188.123.215.55 (kuba@kadziolka.net@188.123.215.55) by pat (envelope-from , uid 1002) with qmail-scanner-2.08st (clamdscan: 0.98.6/25768. spamassassin: 3.4.0. perlscan: 2.08st. Clear:RC:1(188.123.215.55):. Processed in 0.00903 secs); 01 Apr 2020 14:24:54 -0000 Received: from unknown (HELO localhost.localdomain) (kuba@kadziolka.net@188.123.215.55) by pat.zlotemysli.pl with AES256-SHA encrypted SMTP; 1 Apr 2020 16:24:54 +0200 From: =?UTF-8?q?Jakub=20K=C4=85dzio=C5=82ka?= To: 40265@debbugs.gnu.org Subject: [PATCH v2] gnu: python-intervaltree: Update to 3.0.2. Date: Wed, 1 Apr 2020 16:24:48 +0200 Message-Id: <20200401142448.2683-1-kuba@kadziolka.net> X-Mailer: git-send-email 2.26.0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 40265 Cc: mbakke@fastmail.com, efraim@flashner.co.il X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.2. [arguments]: Don't skip the tests, work around the problematic sanity-check instead. --- Thanks for your helpful comments. I have added a comment, which, in hindsight, should've been there in the first place :D I will defer moving the package until committing the new dependent (pwntools, #40265), as this is best done in a separate commit anyway. gnu/packages/bioinformatics.scm | 19 +++++++++++++++---- 1 file changed, 15 insertions(+), 4 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d69c2aea63..943369b275 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16,6 +16,7 @@ ;;; Copyright © 2019 Brian Leung ;;; Copyright © 2019 Brett Gilio ;;; Copyright © 2020 Björn Höfling +;;; Copyright © 2020 Jakub Kądziołka ;;; ;;; This file is part of GNU Guix. ;;; @@ -13552,17 +13553,27 @@ allowing the insertion of arbitrary types into the tree.") (define-public python-intervaltree (package (name "python-intervaltree") - (version "2.1.0") + (version "3.0.2") (source (origin (method url-fetch) (uri (pypi-uri "intervaltree" version)) (sha256 (base32 - "02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc")))) + "0wz234g6irlm4hivs2qzmnywk0ss06ckagwh15nflkyb3p462kyb")))) (build-system python-build-system) - ;; FIXME: error when collecting tests - (arguments '(#:tests? #f)) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; pytest seems to have a check to make sure the user is testing + ;; their checked-out code and not an installed, potentially + ;; out-of-date copy. This is harmless here, since we just installed + ;; the package, so we disable the check to avoid skipping tests + ;; entirely. + (add-before 'check 'import-mismatch-error-workaround + (lambda _ + (setenv "PY_IGNORE_IMPORTMISMATCH" "1") + #t))))) (propagated-inputs `(("python-sortedcontainers" ,python-sortedcontainers))) (native-inputs -- 2.26.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 02 11:54:23 2020 Received: (at 40265) by debbugs.gnu.org; 2 Apr 2020 15:54:23 +0000 Received: from localhost ([127.0.0.1]:40499 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jK2Ah-0005rp-DK for submit@debbugs.gnu.org; Thu, 02 Apr 2020 11:54:23 -0400 Received: from out2-smtp.messagingengine.com ([66.111.4.26]:43257) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jK2Af-0005rH-In for 40265@debbugs.gnu.org; Thu, 02 Apr 2020 11:54:22 -0400 Received: from compute4.internal (compute4.nyi.internal [10.202.2.44]) by mailout.nyi.internal (Postfix) with ESMTP id 603835C0286; Thu, 2 Apr 2020 11:54:16 -0400 (EDT) Received: from mailfrontend2 ([10.202.2.163]) by compute4.internal (MEProxy); Thu, 02 Apr 2020 11:54:16 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=fastmail.com; h= from:to:cc:subject:in-reply-to:references:date:message-id :mime-version:content-type; s=fm2; bh=YatZG/8ACM1fYR/XwzjSSsMc4/ vPEC6kzz1xFJ+Q1U4=; b=uzcTbUpF/OAU+S09VC0dvOxalAaOGjIPlVEQtdo86c 2NKscDsiWIwk15ub/ik+S58fSVi/Dn8/mekur0iXgA7+zRACXvDiyh8/ROuhKeUd DUwdU+mMpLWWBbZ8X6krnasKwVBv0c+lmBDBiGVnrUN6+nOR0qKyx9HDqb5CH2ST egOIEAsjgY2Z0KhaVfBzawnGudQ/MmFWC+N47HyM+wEGw2nvw4Qz6pvt1aWIhYYe xpaFqaJLV6hRRts4uxTWqYL+tqUIK1RqK67BOh1wTTAbf2uUBQeR08C7VnVyNqHU NOQJX6VgoOCJvY/FViWVRVu/qZTzr4AmQuft7Y31epug== DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:date:from:in-reply-to :message-id:mime-version:references:subject:to:x-me-proxy :x-me-proxy:x-me-sender:x-me-sender:x-sasl-enc; s=fm2; bh=YatZG/ 8ACM1fYR/XwzjSSsMc4/vPEC6kzz1xFJ+Q1U4=; b=ys+lSqL/fA7iN0CjD7YdO8 iyiEbDFQq52h1fnCuof5ktvonKZvgEgK59Rlm/aoaUNnm5PiX7YqH82EchssCvoO Gmwkw1jyHB2iTkg6EYQ7F7C0lDlwsMSuGUJp5VcNEwpt/nnFTFtPM99kaiiTWxDS XC3xkoXGfJdhyeXajJdI75A1lp8olr9J5EperYUMqIzFjWupv8397Chbrl8Me2Es k3mbV7kGTnrIyTEshg0L2c/Z7ZSjZ1Iz7jnA3IbLH1SuQTuCZAZh171JWYWxTgUE oZYCKDPt5nxsNBLmeeyOzouLsM9eFZTszNbJyZgKugRq/AIi+IUp73DFqnd6ZzOg == X-ME-Sender: X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgeduhedrtdeggdekkecutefuodetggdotefrodftvf curfhrohhfihhlvgemucfhrghsthforghilhdpqfgfvfdpuffrtefokffrpgfnqfghnecu uegrihhlohhuthemuceftddtnecunecujfgurhephffvufgjfhgffffkgggtsehgtderre dtreejnecuhfhrohhmpeforghrihhushcuuegrkhhkvgcuoehmsggrkhhkvgesfhgrshht mhgrihhlrdgtohhmqeenucfkphepkeegrddvtddvrdeikedrjeehnecuvehluhhsthgvrh fuihiivgeptdenucfrrghrrghmpehmrghilhhfrhhomhepmhgsrghkkhgvsehfrghsthhm rghilhdrtghomh X-ME-Proxy: Received: from localhost (ti0006q161-2604.bb.online.no [84.202.68.75]) by mail.messagingengine.com (Postfix) with ESMTPA id CE7E1306CE24; Thu, 2 Apr 2020 11:54:15 -0400 (EDT) From: Marius Bakke To: Jakub =?utf-8?B?S8SFZHppb8WCa2E=?= , 40265@debbugs.gnu.org Subject: Re: [PATCH v2] gnu: python-intervaltree: Update to 3.0.2. In-Reply-To: <20200401142448.2683-1-kuba@kadziolka.net> References: <20200401142448.2683-1-kuba@kadziolka.net> User-Agent: Notmuch/0.29.3 (https://notmuchmail.org) Emacs/26.3 (x86_64-pc-linux-gnu) Date: Thu, 02 Apr 2020 17:54:14 +0200 Message-ID: <87lfndsx21.fsf@devup.no> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 40265 Cc: efraim@flashner.co.il X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Jakub K=C4=85dzio=C5=82ka writes: > * gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.2. > [arguments]: Don't skip the tests, work around the problematic > sanity-check instead. LGTM. --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEu7At3yzq9qgNHeZDoqBt8qM6VPoFAl6GCqYACgkQoqBt8qM6 VPodTwf9G3ezUIP3hIrac5gzucaBL3fmQhJaI2EFVUUZqFAOJsdgi8vv7U8jg187 XmppKdAmY0tgq0UA0QrF7H/MdSvfZ+vkyfwpbE+j2jxwVJ/1W+GkioCOllJsC7SZ dpGvoWYiCmj8sYvm3ATsSMExbM1QnDQ1wKY4Ab4wfMBTf3hehnG7pXHLk0Gu7ABH XLihER00Kho6mmn788urX5P0eyZZTXihKD/Gzityb+oBqZfW4LgnCTe++qwaTeZO wSPYj2urnFIrcMg9bqf3fgERikZhvNZmDKj4J8sl3rGbqH4ESXkef89/31m+aWQl 1SUJhaXhvB16i86zYF5pprYViuwgBw== =AMEm -----END PGP SIGNATURE----- --=-=-=-- From debbugs-submit-bounces@debbugs.gnu.org Sun Apr 05 14:45:00 2020 Received: (at 40265-done) by debbugs.gnu.org; 5 Apr 2020 18:45:00 +0000 Received: from localhost ([127.0.0.1]:46582 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jLAGR-0007OU-TK for submit@debbugs.gnu.org; Sun, 05 Apr 2020 14:45:00 -0400 Received: from pat.zlotemysli.pl ([37.59.186.212]:53194) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1jLAGK-0007Nx-NS for 40265-done@debbugs.gnu.org; Sun, 05 Apr 2020 14:44:57 -0400 Received: (qmail 32753 invoked by uid 1009); 5 Apr 2020 20:44:50 +0200 Received: from 188.123.215.55 (kuba@kadziolka.net@188.123.215.55) by pat (envelope-from , uid 1002) with qmail-scanner-2.08st (clamdscan: 0.98.6/25772. spamassassin: 3.4.0. perlscan: 2.08st. Clear:RC:1(188.123.215.55):. Processed in 0.022104 secs); 05 Apr 2020 18:44:50 -0000 Received: from unknown (HELO gravity) (kuba@kadziolka.net@188.123.215.55) by pat.zlotemysli.pl with SMTP; 5 Apr 2020 20:44:50 +0200 Date: Sun, 5 Apr 2020 20:44:48 +0200 From: Jakub =?utf-8?B?S8SFZHppb8WCa2E=?= To: Marius Bakke Subject: Re: [PATCH v2] gnu: python-intervaltree: Update to 3.0.2. Message-ID: <20200405184448.ek2qernpt6ixbfj4@gravity> References: <20200401142448.2683-1-kuba@kadziolka.net> <87lfndsx21.fsf@devup.no> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="gb4pc556fnpln7lv" Content-Disposition: inline In-Reply-To: <87lfndsx21.fsf@devup.no> X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 40265-done Cc: efraim@flashner.co.il, 40265-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --gb4pc556fnpln7lv Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On Thu, Apr 02, 2020 at 05:54:14PM +0200, Marius Bakke wrote: > Jakub K=C4=85dzio=C5=82ka writes: >=20 > > * gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.= 2. > > [arguments]: Don't skip the tests, work around the problematic > > sanity-check instead. >=20 > LGTM. Thanks! 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