Subject: [PATCH] gnu: python-intervaltree: Update to 3.0.2.

From: Jakub Kądziołka <[email-masked]>
Date: Sat, 28 Mar 2020 00:51:25 +0100

* gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.2.
[arguments]: Don't skip the tests.
---

It turns out I need python-intervaltree 3.0 as a dependency for one of
the packages I'm working on.

Cc: Ricardo - you added python-pygenometracks, the only dependent. Could
you re-test it, just in case?

 gnu/packages/bioinformatics.scm | 14 ++++++++++----
 1 file changed, 10 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index da3fe1d2c9..a8e4c830ae 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16,6 +16,7 @@
 ;;; Copyright © 2019 Brian Leung <[email-masked]>
 ;;; Copyright © 2019 Brett Gilio <[email-masked]>
 ;;; Copyright © 2020 Björn Höfling <[email-masked]>
+;;; Copyright © 2020 Jakub Kądziołka <[email-masked]>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -13548,17 +13549,22 @@ allowing the insertion of arbitrary types into the tree.")
 (define-public python-intervaltree
   (package
     (name "python-intervaltree")
-    (version "2.1.0")
+    (version "3.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "intervaltree" version))
        (sha256
         (base32
-         "02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc"))))
+         "0wz234g6irlm4hivs2qzmnywk0ss06ckagwh15nflkyb3p462kyb"))))
     (build-system python-build-system)
-    ;; FIXME: error when collecting tests
-    (arguments '(#:tests? #f))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'import-mismatch-error-workaround
+           (lambda _
+             (setenv "PY_IGNORE_IMPORTMISMATCH" "1")
+             #t)))))
     (propagated-inputs
      `(("python-sortedcontainers" ,python-sortedcontainers)))
     (native-inputs
-- 
2.26.0