GNU bug report logs - #39862
[PATCH 0/4] update Dune finite element packages

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From: Felix Gruber <felgru <at> posteo.net>
To: 39862 <at> debbugs.gnu.org
Cc: Felix Gruber <felgru <at> posteo.net>, zimoun <zimon.toutoune <at> gmail.com>
Subject: [bug#39862] [PATCH v2 2/6] gnu: add dune-uggrid 2.6.0
Date: Tue, 10 Mar 2020 20:29:06 +0100

* gnu/packages/maths.scm (dune-uggrid): New variable.
* gnu/packages/maths.scm (dune-grid): [propagated-inputs]: Add
dune-uggrid dependency, so that the UGGrid class in dune-grid can be
used by packages that have dune-grid as input.
* gnu/packages/maths.scm (dune-functions): [arguments]: enable tests
that previously weren't built as they require dune-uggrid.
---
 gnu/packages/maths.scm | 53 +++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 52 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index bec490ebc3..3f89efeff4 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -4646,6 +4646,42 @@ This package contains the basic DUNE geometry classes.")
     ;; GPL version 2 with "runtime exception"
     (license license:gpl2)))
 
+(define-public dune-uggrid
+  (package
+    (name "dune-uggrid")
+    (version "2.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://dune-project.org/download/"
+                           version "/dune-uggrid-" version ".tar.gz"))
+       (sha256
+        (base32
+         "05l7a1gb78mny49anyxk6rjvn66rhgm30y72v5cjg0m5kfgr1a1f"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'build 'build-tests
+           (lambda* (#:key make-flags #:allow-other-keys)
+             (apply invoke "make" "build_tests" make-flags))))))
+    (inputs
+     `(("dune-common" ,dune-common)
+       ("openmpi" ,openmpi)))
+    (native-inputs
+     `(("gfortran" ,gfortran)
+       ("pkg-config" ,pkg-config)))
+    (home-page "https://dune-project.org/")
+    (synopsis "Distributed and Unified Numerics Environment")
+    (description "DUNE, the Distributed and Unified Numerics Environment is a
+modular toolbox for solving @dfn{partial differential equations} (PDEs) with
+grid-based methods.  It supports the easy implementation of methods like
+@dfn{Finite Elements} (FE), @dfn{Finite Volumes} (FV), and also @dfn{Finite
+Differences} (FD).
+
+This package contains the DUNE UG grid classes.")
+    (license license:lgpl2.1)))
+
 (define-public dune-grid
   (package
     (name "dune-grid")
@@ -4675,6 +4711,8 @@ This package contains the basic DUNE geometry classes.")
        ("openblas" ,openblas)
        ("openmpi" ,openmpi)
        ("python" ,python)))
+    (propagated-inputs
+     `(("dune-uggrid" ,dune-uggrid)))
     (native-inputs
      `(("gfortran" ,gfortran)
        ("pkg-config" ,pkg-config)))
@@ -4888,7 +4926,20 @@ operating on statically typed trees of objects.")
         (base32
          "1an8gb477n8j0kzpbrv7nr1snh8pxip0gsxq6w63jc83gg3dj200"))))
     (build-system cmake-build-system)
-    (arguments `(#:tests? #f)) ; FIXME: tests require dune-uugrid
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'disable-failing-tests
+           (lambda _
+             (setenv "ARGS"
+                     ;; unable to load GMSH file in this test
+                     "--exclude-regex gridviewfunctionspacebasistest")
+            #t))
+         (add-after 'build 'build-tests
+           (lambda* (#:key make-flags #:allow-other-keys)
+             (apply invoke "make" "build_tests" make-flags)))
+         (add-before 'check 'mpi-setup
+           ,%openmpi-setup))))
     (inputs
      `(("dune-common" ,dune-common)
        ("dune-istl" ,dune-istl)
-- 
2.25.1

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