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[136.199.85.49]) by smtp.gmail.com with ESMTPSA id d23sm30866524wra.30.2020.02.04.05.54.50 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:54:50 -0800 (PST) Date: Tue, 4 Feb 2020 14:54:51 +0100 From: Lars-Dominik Braun To: guix-patches@gnu.org Subject: Bulk import of R packages Message-ID: <20200204135451.GG2917@zpidnp36> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline User-Agent: Mutt/1.10.1 (2018-07-13) X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-Received-From: 2a00:1450:4864:20::42c X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) Hi, this patch series adds 34 packages from CRAN imported using `guix import cran -r`. Most of them are unmodified, but a few needed manual tweaks (missing dependencies, wrong home-page URL, missing license). Lars From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:52 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:56:52 +0000 Received: from localhost ([127.0.0.1]:42842 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhA-0008AN-8i for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:52 -0500 Received: from mail-wm1-f52.google.com ([209.85.128.52]:37834) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyh8-00089w-0Z for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:50 -0500 Received: by mail-wm1-f52.google.com with SMTP id f129so3784014wmf.2 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:49 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=F8dwAhIEB5kOuDTn/H/nZK0wXos73op4cMJpKgEbDM8=; b=BGNVtNdOoTv3p4Q29iySgh+IJiceFUPGd7bJUmmew9yfeSQORyfO+buLouDLxnNOqD RUeyml18TvIVgBbVTG05NCpIXIKNF07S4nph7/2O0E+YRKhDfeTf4ifLH5bfDzFtW/o6 q9X5K/2GervJ4vFDJvPGoBqyYoxCE5Ld6DGwOWyowbDV5/IWdT0YqKiiCMcUYqOME0dn wJQg4QHg8CKnQ+RafZHGLwpQubVaoq10ETdVAnyNIe4oATdJqr7MDEYzqH0Kr4GuLD2I M1rZ5yHpV/uWS2mCNh6srRAO6cKnuZz/91DNpgtr4Q/8JrdHYONWfRkUmPJDPr9i2jQc CAVw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=F8dwAhIEB5kOuDTn/H/nZK0wXos73op4cMJpKgEbDM8=; b=L11AW08wy5tGHHzn9/6mxUGxP5GZWm7BEnnWvD5Q1oxPquXsLO2HzMQr+8HGoozZI7 EgToKHJ+4DxRCTVysaqBVR5IEoluEveZWAQhQCZr+I3q/3kfU0XbLF7XRURdUVm4/ERV +SQcQZcQ3sSP9zGe/7O6v2Nez3rmTKHcrfY1fhb7SZaG6fzbW1qiqoBaR4SlV+7wrg0w fEbkSDeN6Yrz97EA7+smT+hJOjBCvenB231TXh4K38IdgSMOU4P5hRFcA5H49wc7ig58 gRZf1tlxmCIzftmGBTIgoU8sUtfN5p/qSLRRm5X4grxXojheiHrT1ZZx0/JGwiGXUpNF idJg== X-Gm-Message-State: APjAAAXHg1BFM/OZM27eU/Hos9UazGJDhvfwUcU38mbTtbFSCSaQGNV8 Myt0N8CrQg0i/FZ/M+VnG0qFgbEgFZ+OqvsNqv+l+JhHlB2RAazHh0CHUX9fowoURhADemKX6QY dKb36URS1dExxnSG084wPzbXr+PiYoi4X2bfWnxzY9HAPlCGxKuFUVcUhtchOKHgDOGwJBja/lV Tr7kjJrORe X-Google-Smtp-Source: APXvYqyWhK46yR++9hHGN1Tdryk7BIrYxgoHijK/8/h3r2dIIg50EmEZkzEnUsJv8/BnM5dtfWW6pA== X-Received: by 2002:a1c:f003:: with SMTP id a3mr6208381wmb.41.1580824603977; Tue, 04 Feb 2020 05:56:43 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.43 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:43 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 01/34] gnu: Add package r-fracdiff Date: Tue, 4 Feb 2020 14:55:53 +0100 Message-Id: <20200204135626.28261-1-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-fracdiff): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 58ceed06d0..4fbaa6a00f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19259,3 +19259,27 @@ are followed and which ones are not) from one package and use it to check another. This makes it easier to find and correct the most important problems first.") (license license:gpl3))) + +(define-public r-fracdiff + (package + (name "r-fracdiff") + (version "1.5-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "fracdiff" version)) + (sha256 + (base32 + "1dhfjlhr9sb38qgpsx0sm73l9lgc13d0fk32l7fmjfnalhr3n45q")))) + (properties `((upstream-name . "fracdiff"))) + (build-system r-build-system) + (home-page + "https://github.com/mmaechler/fracdiff") + (synopsis + "Fractionally Differenced ARIMA aka ARFIMA(P,d,q) Models") + (description + "Maximum likelihood estimation of the parameters of a fractionally +differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989); +including inference and basic methods. Some alternative algorithms to estimate +\"H\".") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:52 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:56:52 +0000 Received: from localhost ([127.0.0.1]:42844 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhA-0008AQ-GC for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:52 -0500 Received: from mail-wm1-f42.google.com ([209.85.128.42]:51188) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyh8-00089y-OX for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:51 -0500 Received: by mail-wm1-f42.google.com with SMTP id a5so3421887wmb.0 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:50 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=/DyaRQxQ5DcKefQnKpMn+j/UunrJl5WVIdrSzdlQ/VA=; b=yuLFI7BddEdOtBQAowkx7Zlzs0v8l2a0w7Xbg7q1drqb9JrnCzFpdPWbuggozuocGO 9KHv3EyooSOtQRpMNOOZ1rMQS4P2WMQqolmTbVKEK5dfA+AJT4siF1aCQ4FjfdABec9b 340JIncZ9tW7NgNHK5uHNOYor8QyMU9wbD6qe3CFaltfi9YwtozejE3gGINhJzKhwVl2 NMrrVjtuJ0iQOaelDgDBUvt1GTHKxO4johTw034PVCxZZtQ/o0fWd3+mdQ/de9CvRtqc E0QCjRBpte4HeUMKuyZ5RiLT+wDqOltoYRkCzJj4fq+BMIbrHU/nQUQZWmG1C9klja+o R3wg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=/DyaRQxQ5DcKefQnKpMn+j/UunrJl5WVIdrSzdlQ/VA=; b=H9RMS9N577PMmo8gKiKkyraikqngklhVn/ETnAGHGER0Wh9jTOgXGt3yXH7cLPYlCN t+1wCxxXoRCBKOEbQN2/khP5aOh9tZyrc5FOwlckizIVWDVbXhw9s8g7ZfEfMaFlUo71 f1ify7AYqqCGvn+DCKdrzZGstJypYmuKkqt7SDEobi3+37Ch0nWbjmE2uL07aMA+kg8h YCP6i7KZnP1zB/Wz0q/oJtvgzmQCH34R6zBVhtzR3NLRDjixzNwNxNfArFpHeqnyd8U3 v/B2LJxYaXL7nOwJSb5TBpx2slPe6qd9pwfBVX29/iJQ7U+h9VEB5Kz+doriEo+9YH+L j7eg== X-Gm-Message-State: APjAAAXAOHmvRr6vWU9ElgsB6lKZpBZu2hPWDgJIaCr1uWR/hvebXiil hIj7OQPG4QZsJIc3HuB1LdSW3eCKGn1a+qWrKhIQNvFXkWaP/96w2s1C+KaHd3X36YFlg3o90++ +q+0HXHgJwAjIAsJgHChkV10pvwcEMCv9h6KwX9e4STY1ALqSh+/kO9X29SJJN2/gwBDdZDLl4r q7l+XBCOqq X-Google-Smtp-Source: APXvYqzRJkFA/aGpEBM/KkGUNJZHu9kVEHDbI1V1SbWzp7Kv4y5sF8KrKDolozdBTrtrTnOShV1JEw== X-Received: by 2002:a7b:c8d7:: with SMTP id f23mr5817150wml.173.1580824604778; Tue, 04 Feb 2020 05:56:44 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.44 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:44 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 02/34] gnu: Add package r-forecast Date: Tue, 4 Feb 2020 14:55:54 +0100 Message-Id: <20200204135626.28261-2-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-forecast): New variable. --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4fbaa6a00f..8c1e719143 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19283,3 +19283,40 @@ differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989); including inference and basic methods. Some alternative algorithms to estimate \"H\".") (license license:gpl2+))) + +(define-public r-forecast + (package + (name "r-forecast") + (version "8.10") + (source + (origin + (method url-fetch) + (uri (cran-uri "forecast" version)) + (sha256 + (base32 + "0jccr2wg7sii38lyqrs58fkxf2az7nw6v0jya27hpbz9bg8ib3kr")))) + (properties `((upstream-name . "forecast"))) + (build-system r-build-system) + (propagated-inputs + `(("r-colorspace" ,r-colorspace) + ("r-fracdiff" ,r-fracdiff) + ("r-ggplot2" ,r-ggplot2) + ("r-lmtest" ,r-lmtest) + ("r-magrittr" ,r-magrittr) + ("r-nnet" ,r-nnet) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-timedate" ,r-timedate) + ("r-tseries" ,r-tseries) + ("r-urca" ,r-urca) + ("r-zoo" ,r-zoo) + ;; needed for vignettes + ("r-knitr" ,r-knitr))) + (home-page "http://pkg.robjhyndman.com/forecast/") + (synopsis + "Forecasting Functions for Time Series and Linear Models") + (description + "Methods and tools for displaying and analysing univariate time series +forecasts including exponential smoothing via state space models and automatic +ARIMA modelling.") + (license license:gpl3))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:55 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:56:55 +0000 Received: from localhost ([127.0.0.1]:42849 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhC-0008Ax-NC for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:55 -0500 Received: from mail-wm1-f68.google.com ([209.85.128.68]:35422) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhA-0008A1-GA for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:54 -0500 Received: by mail-wm1-f68.google.com with SMTP id b17so3806488wmb.0 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:52 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=dyhjdAjroFt9OZm6yK5HpTx1w6Jvbm3hiB/EJpA3qn4=; b=BWsXNxkVrDE+z5k8GA7h/dvLXWYY6fwLG1COOP1sMfnFPIz06or+jAK0GinNksGJjF oH0ux2eJKWBg/oz6JiK+8TghTXRKPN546hqSBUlTvk3xhVNjHBPma7SVvPForKRmThJb vY5JBIh0YX8g7NcDJ19KkM5pozJ70Xyu0H66Ix6j+0msMWWyqdSzl82x7WdKWfZK/s0+ DMLf/f/zQnKnQUli2lgD6YNJHWJwQANLd3is0msdBup0eEYhApvBH/lHGOVCevqp0WZ0 l5US3GlHD66b9wPiT8ByQQDC3rHS/Xkdze27M2gFPI2jPJ7HW4bK5LnPWdc48T7sqvHS ra7g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=dyhjdAjroFt9OZm6yK5HpTx1w6Jvbm3hiB/EJpA3qn4=; b=PKW/CVKrKomOE/181MnQ6aDu6Z/1pxAMnC8K5fJaeYKTDMU7jf/OUZgY0VLNX6zklI ZStNHB/r6DiNUoP0Z79Oo93HAj1Y/1L3ZCqtPUKwP/hxrJyz9VGecEu9NPjt6c71IKLq jOgDw6htRWd8U1xhylbndoofUNFBlBxv9yJ2oJRcwthuu1UbcMyWwq4v1CnaaEaMhOsK PG/qh3GCBTOg8xz2SyQxJ9zWoeo2g19mghHapSrAHq2WF1zBkR40fm1ehNr6i41RgIIR EEca/YupuG9Nvf+xDx3+QGqfGIvl67TSNLglyWGYew/zcltdZKl6pg+7n7BElFc09hMZ 1fFw== X-Gm-Message-State: APjAAAXhlecid+/m5BBKM8dq47wAmPA9xeOtA8CdRhHUpzPzJjy4wXlg n3aXLo5ca4ZkoZaDpaxCcXfk5ome0agNS7FHPa5VL4KY8Kba03Hc8TpEElmOaFnabAHrw+OGH6j 3V7M4nPQH8TyzuvIlAD2cMHUL3KHZaSxbzOaRg0K0lcaP7x5TCmhvQ09qU0zwDeJiUufGqN+ihO fqmmTW17DC X-Google-Smtp-Source: APXvYqyz+mOtYO8HMp27QvxE37N1r80c7IQqcDfaHh2LKFfnhtB0A8DRShkN8TjlFc8HjuIH4QO0fQ== X-Received: by 2002:a05:600c:294a:: with SMTP id n10mr6140039wmd.11.1580824606430; Tue, 04 Feb 2020 05:56:46 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.45 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:45 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 04/34] gnu: Add package r-proxyc Date: Tue, 4 Feb 2020 14:55:56 +0100 Message-Id: <20200204135626.28261-4-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-proxyc): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9ab1d4ac84..9028ff310f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19342,3 +19342,33 @@ ARIMA modelling.") "This is Xiaobei's miscellaneous classes and functions useful when developing R packages, particularly for OOP using R Reference Class.") (license license:gpl2+))) + +(define-public r-proxyc + (package + (name "r-proxyc") + (version "0.1.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "proxyC" version)) + (sha256 + (base32 + "159bc42x4shm6n3rh9fc8ziv3ivq0ipmpbasrh279hhn1prc8gg6")))) + (properties `((upstream-name . "proxyC"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppparallel" ,r-rcppparallel))) + (home-page + "https://cran.r-project.org/package=proxyC") + (synopsis + "Computes Proximity in Large Sparse Matrices") + (description + "Computes proximity between rows or columns of large matrices efficiently +in C++. Functions are optimised for large sparse matrices using the Armadillo +and Intel TBB libraries. Among several built-in similarity/distance measures, +computation of correlation, cosine similarity and Euclidean distance is +particularly fast.") + (license license:gpl3))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:55 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:56:55 +0000 Received: from localhost ([127.0.0.1]:42852 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhD-0008BD-5g for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:55 -0500 Received: from mail-wm1-f45.google.com ([209.85.128.45]:38800) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhB-0008A3-0s for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:54 -0500 Received: by mail-wm1-f45.google.com with SMTP id a9so3772685wmj.3 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:52 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=+BJu496oda9eqs344PTVvUHbpYk35FUydEHCGMQJpy0=; b=Muq6GP58ZQlMSTAfs/rfE/b2P0/vTlCjYQ5XLuHjjHmycZSmJSF9M6h3BnR/fbP4rS 41JE+ex0bb54aJ4AU5lC6NQJ5n+YQIRP1VOBxxfB6nh3DdQVXOsui3Pep+KcdtiSVU6n JfaLuv2mW+kBRru9zMD0XodXIZM2MonEiROlm+dIIwoKgyQtckc/Q1Dcl4ER3P8lH4PO jrDxcAjnNf3renA6K2Z3QdesvAzA1LFuPG+FajkCKtpndvwPxsETiatnU0QLxo6M1c5Q liaRM9hC1KavmUS1E17TzYEdFwJTQxNvh1K3gXTRTiEqF08q62x4JdvP6foRYmF/YYHL QQmw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=+BJu496oda9eqs344PTVvUHbpYk35FUydEHCGMQJpy0=; b=sf67f8EC/KRBsRA1kkhskWv9AJn6VvhPymVrN8RcdOD+1ipAqRM6RKuF287Tru2Fy3 FbDzr3Mcf1WT29rzVDPAVL+p8fMPVYm7qO2mPFImNTy6tPhF3PmZVKqLJnyaBTZAGM/r BZH2CiJbbOv0uToLNuKd7JCPGf+xb3aUugRLinwGVVyPdVQILYpx+YZ5VjVYoEnnpj2G r1Ttkz8eRaoc+FiUW6C8plZBuQYf06MqUzVGeNTc7nPWVbCIqs3yFAo+8pQakgYYVNqH 0nZyYjzdUUfVrfatoEuP2nU10TDUp7GlLxF8O08ZkQ9DYgBRjjcgrP2Q+QQCVI9h155z P/7Q== X-Gm-Message-State: APjAAAW7Nws9WwpPvEEQNsnmLhslYCP14d0nO1B2KdHSxXo4Te16EsaC 69mvNBkhicZuI13WyT8hW+VyAtoNC9I+AQrZdBSnFDPfGm3tXyjTOQqNp3OLj8QVcyYdV8Zs5o/ lLmQEJR03PQdezfMVdGVAwouqssydhRUx+lj/IqPowD9/JR9nTAcZWVqzoJeZUK8IsuownzcApi yMhQo/32l7 X-Google-Smtp-Source: APXvYqwH1MUaQPQXaAzA/6mzCLqs0R9N1aiBt76nvp//3ufHLuJcYWwAbI2YFowRHmGlh+uhWNBj5A== X-Received: by 2002:a1c:541b:: with SMTP id i27mr6443897wmb.137.1580824607209; Tue, 04 Feb 2020 05:56:47 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.46 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:46 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 05/34] gnu: Add package r-isocodes Date: Tue, 4 Feb 2020 14:55:57 +0100 Message-Id: <20200204135626.28261-5-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-isocodes): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9028ff310f..4bd3be3d0b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19372,3 +19372,26 @@ and Intel TBB libraries. Among several built-in similarity/distance measures, computation of correlation, cosine similarity and Euclidean distance is particularly fast.") (license license:gpl3))) + +(define-public r-isocodes + (package + (name "r-isocodes") + (version "2019.12.22") + (source + (origin + (method url-fetch) + (uri (cran-uri "ISOcodes" version)) + (sha256 + (base32 + "1k2f2258bwzs0b3nxma9kcw395qkljvk514a7047rx4dn0iwd874")))) + (properties `((upstream-name . "ISOcodes"))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/package=ISOcodes") + (synopsis "Selected ISO Codes") + (description + "ISO language, territory, currency, script and character codes. Provides +ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO +15924 script codes, and the ISO 8859 character codes as well as the UN M.49 +area codes.") + (license license:gpl2))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:57 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:56:57 +0000 Received: from localhost ([127.0.0.1]:42857 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhF-0008Bj-CA for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:57 -0500 Received: from mail-wm1-f45.google.com ([209.85.128.45]:54597) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyh9-0008A0-Km for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:54 -0500 Received: by mail-wm1-f45.google.com with SMTP id g1so3392291wmh.4 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:51 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=3Qsx9WEwYBdy2md2gxHs0DU6C2U1WzGuHtU8UzpCtcs=; b=TjxfXuQuMOcKiy+l5X1PRqU0HDufYB/tGBypYi8TD+Po+jRkP8hPUAjJ2rpa0YxWB5 mII7DoePjQ8i0sJb7+dKaLn+0YxXhSv2JRp3aSlT+TL/5zEm/X5tXfytCMyoSLv65thE sHdBsa0gM6aeIRaEtX9inKI8zPAlFo36v9lhhl9XLu4plWetWAaVGVaP74tYLH6pCutM RTJwGMrALOkWUWLYnivZYppEivRBive/h4xpY1oOGneLHXJ12YSZW+8AXH0XYWUXWC3E Srtf7ZdagQt7QDrkYW/ARP8BZ5dUInOj0pZLS/LKabf5TV/o6cK9m87Npw/edf16oKM7 WBXQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=3Qsx9WEwYBdy2md2gxHs0DU6C2U1WzGuHtU8UzpCtcs=; b=DZs4dwxEt0/hyoiIxDoxLmHOBjCbAxIcJajPfokz7Nxh14R0Rv1+DuYNVLpjcWmcp6 mr7aHGA6Wz4sjkZ4Hn2naEkkvJYJwdJcPHWA/SVbR4Mhyr3/ebLUElAScprl9Sm8l+d/ yBDVIAeI6NfAShyOKJbL0zjtnbheKcDRN1VvZsPXDqKHIHpQhNQAxc1KJZXT3Rkttqj8 stiGzR9e+4QzdQB2QRdzd25Y8wQ96LA5wJ8pKw6dhI8LcJ08a14nwAR09ScTZEqoog7I f2Rb9/L5KOsrg9rRBq16zD7yiDGaCjy9wPQcc2XAqLvsDmQFKmNL/Ra5kxicnK+94Xkz iGwQ== X-Gm-Message-State: APjAAAUBsRzFuwp2AtKm+f0nM2gckqqAV3P2hk43c30r1SxYfgyL4/JQ H1qFC0TvqMm4X+vtwKEvdZUONKcakBA5Lko+X7eDDx92poGOSY8WsaCShTeLfnRUOunI1Jo3kUh WDJ4GbCTgo3WLJVMJlNHak2NIQvsKK4YWAyOXmomIEtnRIN8n+LT1xCsKiFd6LwdWozIG5W98ae bC82a4oKAs X-Google-Smtp-Source: APXvYqzG1ZR72VM8iDBTYooWi4qOYysB8/ZqR1b4gm2glgpzmnmaTalUOYH7n5pToTl3KqjfABMfwg== X-Received: by 2002:a1c:f008:: with SMTP id a8mr5838507wmb.81.1580824605533; Tue, 04 Feb 2020 05:56:45 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.44 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:45 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 03/34] gnu: Add package r-xmisc Date: Tue, 4 Feb 2020 14:55:55 +0100 Message-Id: <20200204135626.28261-3-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-xmisc): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8c1e719143..9ab1d4ac84 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19320,3 +19320,25 @@ including inference and basic methods. Some alternative algorithms to estimate forecasts including exponential smoothing via state space models and automatic ARIMA modelling.") (license license:gpl3))) + +(define-public r-xmisc + (package + (name "r-xmisc") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "Xmisc" version)) + (sha256 + (base32 + "11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1")))) + (properties `((upstream-name . "Xmisc"))) + (build-system r-build-system) + (home-page + "http://cran.r-project.org/package=Xmisc") + (synopsis + "Xiaobei's miscellaneous classes and functions") + (description + "This is Xiaobei's miscellaneous classes and functions useful when +developing R packages, particularly for OOP using R Reference Class.") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:58 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:56:58 +0000 Received: from localhost ([127.0.0.1]:42859 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhF-0008Bm-La for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:57 -0500 Received: from mail-wm1-f41.google.com ([209.85.128.41]:51198) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhC-0008A5-Fq for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:54 -0500 Received: by mail-wm1-f41.google.com with SMTP id a5so3422161wmb.0 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:54 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=JYdkv9lvgQcyqC2x+Uty+ph6SwgfucKPZw3N2tf7qh0=; b=ayks81OKdwZBTZyhhH3Qb/dK+mXg50pG1PAj3+o/5+nr39mIetbeeZhFrB6buocITx l2wk7ohpQJ9NqRSiprqlvw0FsXS5KTDnyUpJlezISfO4AkUzj9LGeieehUQO4xNVTaa3 /ZG8zs/pk/OBeCk339XCVjIeMSB0hqese9OTXCl69ljSAIdKW+WBME7dRS6X/Q4ZGX3i l5ZuBojEBLnkIrDfAJ4qJUPVZ4c1Mj5s8AFxlmRAeQxtHUYcBNXlie0cD26UhJ0TxvOh Yscfa/hvSletPCz1E3mviMEAnbsqUjcn54pD+QUQpjoLewOv2hjPS1oKfOY5oPFMTrLZ Zgpg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=JYdkv9lvgQcyqC2x+Uty+ph6SwgfucKPZw3N2tf7qh0=; b=Hf1Zlh69ZXR8DSrulHEHvUlgYtglwWABY/e1EH/WFAM1P6A+7QoKFsZ+Gmk8cQHoNV sc8rin5hGta2Jg0nU7Zw38Snh5OJVFWj6OigE227B9UaPWNm5TQ4EKM8SotIWNMPoMo2 pAbgZiYq6VN4XjaDx6pC1Rp3YUEC/9ELt024zvHgo9TsrShyiNh4Lt9vQScgexljS5Go 1RdPa1EH5nfqYujCfVyhSfy4XPLACJRthonCJn4e9ixZwRbOm3IYbwD03cjmK9d53vBI IuYM2fmjc+9kifPpRcEZLRKP81m28FEvni0iCDmX+fQFrfdXzit7ziuO7643KyT/V2Jc 8Ymg== X-Gm-Message-State: APjAAAWsgQDaYRygpkv0xUK2vPEquY+ieyBCN2eRyuJW6V5K73U5OctC /za2rAGdiRBXKy/A2GyOegp74vE2jCvm9KovwZ+xVpcM+UVVM+RA2d4BMBESkqWGNJVHjH3+xx3 wufXzVzVXzpaa3/w8XKCLw1gr/AqfVdKTZYrpfNOZ1/kFHsIgfkf2Es5xYyr+lpBrv9U8kVPKEU xUWumq/H9G X-Google-Smtp-Source: APXvYqxR73N/Rj3TEMZ5Xx0uwQEEmLpg11KyHq47DaKAk80VUSJ+P9B4XCAYv63V2s95NhepRN1V5w== X-Received: by 2002:a05:600c:118a:: with SMTP id i10mr6193839wmf.142.1580824608478; Tue, 04 Feb 2020 05:56:48 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.47 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:48 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 07/34] gnu: Add package r-spacyr Date: Tue, 4 Feb 2020 14:55:59 +0100 Message-Id: <20200204135626.28261-7-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-spacyr): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4330ebf3d3..819aed90e4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19417,3 +19417,26 @@ area codes.") "This package provides multiple sources of stopwords, for use in text analysis and natural language processing.") (license license:expat))) + +(define-public r-spacyr + (package + (name "r-spacyr") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "spacyr" version)) + (sha256 + (base32 + "1xsiz6zx89vs6ykrkkp011d8fz4ksdgnf5nyaq5ynjr6zv865vks")))) + (properties `((upstream-name . "spacyr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-reticulate" ,r-reticulate))) + (home-page "https://spacyr.quanteda.io") + (synopsis "Wrapper to the 'spaCy' NLP Library") + (description + "An R wrapper to the Python @code{spaCy} NLP library, from +.") + (license license:gpl3))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:58 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:56:58 +0000 Received: from localhost ([127.0.0.1]:42862 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhF-0008Bu-Ug for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:58 -0500 Received: from mail-wm1-f50.google.com ([209.85.128.50]:54609) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhC-0008A6-KW for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:54 -0500 Received: by mail-wm1-f50.google.com with SMTP id g1so3392472wmh.4 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:54 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=k97bYfquC5YgeDl5KAYqCCgNpKQP4sXSNK/K8VFgO1k=; b=znZFgOkTRXxfvOA+gZuepEz906JaPsyFl0ixOkgUYLx6wKOA81IWGZXLbEhykTNSiV iyH/dSXWm9J2n0K2alNMeH+XH67j+UxFRpnyfGAPOGg+F9EjtFIYDa/c7K9xCmxVW3IS 7HdL9eROzJIjkVNU6oZpZ/BdahHhw7c7ogXFQxvUQ6Hv92r8LBwyIjmuk4SmNhoSJ4qw gYFA2FmWUvS8NgxmdOiECMdG4/8HyoFqRd9zF0tyjWvlyym8KuRNJPrKg92H/z7NTXTr 8tTvDWlPELLQ2kPvzp4aubP6HcrymtX1b9fOKi+Y8EjcL6Rmj6/Ns9gsn7x8Sh7keQtw liIQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=k97bYfquC5YgeDl5KAYqCCgNpKQP4sXSNK/K8VFgO1k=; b=biZof2UyP7hN9MHraULDScfyZHqgaFMagOcyCoRRwEazI5JaZgvLTUv5BnpGwMadx1 RNUCoqSE8CdVgldqpHyB180W++H9pfC6MLvB6Tx8a1Ky2xh//VyGVabfdZaEgwvzcXlP wvtCxVTPAYB+xFKyFbqO7BAC2R29lXYbnpU1XMCjhAAk4EbNUVNnkS12HA5bvuvYIvyb Y7xdOW6DNUST8lDUEtWWcLapPuoRbWNfgO9vfXUGG0g7hQlWMft87KpUyIophHJ2ay7n 2nm8jx7oB4Bp5ftWyeJ0ISZ3Du3imsYHXWrICOdI3LngS0CO4dBqyX5oKzqJLkw3TqXv iB4A== X-Gm-Message-State: APjAAAXixSA2R0MwSLCJjmszLhojrnOF13gFR2FrHIZhvL38tzSBYKck 73+9YWqw+Ij6Mkey6ON6S62MTnLieVeFs9hdRpRHsRdO9ABLfBnTxjG+pVXsM6LaDMb7QKvQ9cu oAVAj58Zb0mhNJOG+h8qL4ot2e1unX+Mwz+vuak6yEU/C9eqMTqFy/x7wYzZm9a6Yj5rKzkE+yb RfWiDVdAwW X-Google-Smtp-Source: APXvYqxdtVs//6Mj4aoUiKsqh1LZxpzq/ZQEX4vgO7MqcnsblxLCuY1nIpuJdpj5DXnmghdrSKbmLQ== X-Received: by 2002:a05:600c:2c44:: with SMTP id r4mr5820116wmg.140.1580824607892; Tue, 04 Feb 2020 05:56:47 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.47 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:47 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 06/34] gnu: Add package r-stopwords Date: Tue, 4 Feb 2020 14:55:58 +0100 Message-Id: <20200204135626.28261-6-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-stopwords): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4bd3be3d0b..4330ebf3d3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19395,3 +19395,25 @@ ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO 15924 script codes, and the ISO 8859 character codes as well as the UN M.49 area codes.") (license license:gpl2))) + +(define-public r-stopwords + (package + (name "r-stopwords") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "stopwords" version)) + (sha256 + (base32 + "1nmi0bpd0c238g5b8ch1v034m5ng9llhs519cgxdrj3sh9fplwlv")))) + (properties `((upstream-name . "stopwords"))) + (build-system r-build-system) + (propagated-inputs `(("r-isocodes" ,r-isocodes))) + (home-page + "https://github.com/quanteda/stopwords") + (synopsis "Multilingual Stopword Lists") + (description + "This package provides multiple sources of stopwords, for use in text +analysis and natural language processing.") + (license license:expat))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:59 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:56:59 +0000 Received: from localhost ([127.0.0.1]:42865 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhG-0008CF-HQ for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:58 -0500 Received: from mail-wm1-f48.google.com ([209.85.128.48]:51356) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhE-0008AF-0d for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:56 -0500 Received: by mail-wm1-f48.google.com with SMTP id t23so3429194wmi.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:55 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=ehWZYtBZNe1xQ3S/sWojPfSsTCReYtlkFgb7VcP4GWI=; b=vDTwHykIdx/TvuS/UpaBvS1rHdjonJCUzTWnKBltWTDtS4iIH5K4s3PVt3jnr6CLgm IRftsVci/7rQxSjIBk4eNEkDwKBrRa0dyBOUyro/rJmsU5DL84Zi6w1vNcipSva3qs/f AB8z1g0upfgG1ecDCY10w50vMx9TYtU9StRD9cn+ptPvqkqa8Yg81YWQDVjTYRK61sca qerPC219eaW+QBZMHq6JT9poeDCFwcILPL875nOHZ9oa94YZduszq7cZ+XvsOAz4Jf6O dIaz7NoAcUZiNo0aq2hVVxnUZdT9fGdInucgMcECwi4m5Z6riAAH6Sk5M9Zr67PlSZPW ZEGg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=ehWZYtBZNe1xQ3S/sWojPfSsTCReYtlkFgb7VcP4GWI=; b=fUCnKZLS9UHHcfz+OJTlH6rVvEbfSw5oi+Ls21uFIYCUIKz3LxX7w5wET4HBuT+zmg y1e8DVg7eTt5eFm3UP/MkHNTDQbYq4+7xU/Q9uyKf6k+rKCKSwgEBiGsymSm/Ya11paW jfVcQvdyO/mwsDRkiysUJyTUpYdo27yMNQ7G6RVfSvTpIypiyQURGM72bWO1MfmoJaE0 PcaELD9jKZnpAyTb12NcJqFbR2w5VkeU1nonuNPYQd5g/uaByIkoaRGBiqrCp8BpXfux dfRoFwUcSJrBEksm/gg0DRzap5QMpstxfG5dYqR2REN63QaP+MUZObokwoPe2NcVVEW2 AO+Q== X-Gm-Message-State: APjAAAWHFac9vZKChsfIalU7fb23jb/Q21fRzctvLfuVLVw3ljlsETOd mw3FSeGirvvJGxLCtzpuqOzyET2QtFddTp7xM8rhSs8RTNI/sMdnNGcafIjqzrUO6XVCwPIVLm7 1p5B5rQcwXOySIBkktTySngXjNWwbrI7jAUXjMgA9ijyaWPmqaqCOQyhyF4sDv9SS2k+wCJL9c4 ZNAxZYi9+/ X-Google-Smtp-Source: APXvYqxGLXGLBmpjHdAxZppjOI3Q941y3JfKCtskugiNLpjb5M1+LkV+yDwEB6unowrX6lOtmRmmBw== X-Received: by 2002:a05:600c:218b:: with SMTP id e11mr6086979wme.56.1580824610042; Tue, 04 Feb 2020 05:56:50 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.49 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:49 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 09/34] gnu: Add package r-quanteda Date: Tue, 4 Feb 2020 14:56:01 +0100 Message-Id: <20200204135626.28261-9-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-quanteda): New variable. --- gnu/packages/cran.scm | 48 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 48 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 235f7d3ab3..917b5df643 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19465,3 +19465,51 @@ of vocabulary. Currently supported languages are Danish, Dutch, English, Finnish, French, German, Hungarian, Italian, Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (license license:bsd-3))) + +(define-public r-quanteda + (package + (name "r-quanteda") + (version "1.5.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "quanteda" version)) + (sha256 + (base32 + "0iv25rpx5cl9ansazjs0qb97pniajrxf4mqsnb5q98y2hil9ipd3")))) + (properties `((upstream-name . "quanteda"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-extrafont" ,r-extrafont) + ("r-fastmatch" ,r-fastmatch) + ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) + ("r-lubridate" ,r-lubridate) + ("r-magrittr" ,r-magrittr) + ("r-matrix" ,r-matrix) + ("r-network" ,r-network) + ("r-proxyc" ,r-proxyc) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppparallel" ,r-rcppparallel) + ("r-rspectra" ,r-rspectra) + ("r-sna" ,r-sna) + ("r-snowballc" ,r-snowballc) + ("r-spacyr" ,r-spacyr) + ("r-stopwords" ,r-stopwords) + ("r-stringi" ,r-stringi) + ("r-xml2" ,r-xml2) + ("r-yaml" ,r-yaml))) + (home-page "https://quanteda.io") + (synopsis + "Quantitative Analysis of Textual Data") + (description + "This package provides a fast, flexible, and comprehensive framework for +quantitative text analysis in R. Provides functionality for corpus management, +creating and manipulating tokens and ngrams, exploring keywords in context, +forming and manipulating sparse matrices of documents by features and feature +co-occurrences, analyzing keywords, computing feature similarities and +distances, applying content dictionaries, applying supervised and unsupervised +machine learning, visually representing text and text analyses, and more.") + (license license:gpl3))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:59 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:56:59 +0000 Received: from localhost ([127.0.0.1]:42868 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhH-0008CO-1T for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:59 -0500 Received: from mail-wm1-f66.google.com ([209.85.128.66]:33274) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhD-0008A8-7x for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:56 -0500 Received: by mail-wm1-f66.google.com with SMTP id m10so2276249wmc.0 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:55 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=E3lj+bhIrayUTeOoS5GPzuWAu09KGfaqWLLcY2y/CkE=; b=qDU/jHUNu3CzBfZHT4E/h9obNDYW1nsETqWd44rsf2p27N/gAucbWwPo/42fu3OMRR FiO2S0C0TSrgNs5ym+CWhRbghfe9lnwX7RL9XUzEDgaprL+c5WniaPyPsv29QbHUA4Wv p7DW8zRY+9pk3sH25rk5Rrx6qfIlLkHHnmCgXMK405HrxREkfuPPY6p4YMjkXZLRvUlW c/8Y4gTUeqUOhE2D0X6qJIwTczEXnd/WHkhPkOFa/OQpJ6vdg7i3Lhe1117WjCgXMvsl 3dI/bH6AKGcxFxzw+qT2DQqHpliTVr2FNW0l/4anIyGwsJr4PTVwqk0kULtMhWACxX5r viaA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=E3lj+bhIrayUTeOoS5GPzuWAu09KGfaqWLLcY2y/CkE=; b=d7uHB/MwrjeMUufWXIOBUj0muKMoJ3UHPBLsHLev74ZoiOgofdsNG2BI3k9trYGxiQ v6MhRO3MrO8qj9+BoglRFxsEhZmqiz5qxxSy+uWFym66KUbC5ZlKdnfWTcuBsSgFrI3L l2aLa7NyCfJIQTzGzHGUw1YrF2xI9z+aXrcW+icjysUpwxXgrdxAnWuxJWQenmrKfdbV b5yWi7FHEC4Qp31zlqH45nAYwo2X5fv45IXcEaAL+APAHd/s5c+X15YIi7rtiUusYgXt XCYk3Zek74QctvGJgTLqHPqoC6vCPtbBbi2u+XAzk1yVWanPEkrXHuLRUpu6VyR6aS3e dGgg== X-Gm-Message-State: APjAAAWoPsaZRD6LNEwrIiQktU3oYV+0d/Aj161JiMiRMpFhq8BHRyM4 beByPYi+Qh3M2RbbCI7ZqdaM70x7ViSd2l2vNdUcNTbFCxRPblpUzRhKDC5fedJGY7SNc4+6E5p cERLE0ugI/W+5l9mHaOiYL8/T2I27PfIY5zGWfpdZm+i4bc1a9iW8z5/kiH1WGj9nhQeguGeVJb DK2maU0ALw X-Google-Smtp-Source: APXvYqy2GoB/oyNMPhksHhxGNbjAitA96ZgfuYaqv6XYmxJ5CswkxsVkjgF4m/wVc3Z2DduJziKUxg== X-Received: by 2002:a05:600c:d5:: with SMTP id u21mr5993647wmm.98.1580824609336; Tue, 04 Feb 2020 05:56:49 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.48 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:48 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 08/34] gnu: Add package r-snowballc Date: Tue, 4 Feb 2020 14:56:00 +0100 Message-Id: <20200204135626.28261-8-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-snowballc): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 819aed90e4..235f7d3ab3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19440,3 +19440,28 @@ analysis and natural language processing.") "An R wrapper to the Python @code{spaCy} NLP library, from .") (license license:gpl3))) + +(define-public r-snowballc + (package + (name "r-snowballc") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "SnowballC" version)) + (sha256 + (base32 + "0b7pqdavf5jbf8si4ybnii5fff39p3b1rb5rym05j8s48hs7sqb1")))) + (properties `((upstream-name . "SnowballC"))) + (build-system r-build-system) + (home-page + "https://r-forge.r-project.org/projects/r-temis/") + (synopsis + "Snowball Stemmers Based on the C 'libstemmer' UTF-8 Library") + (description + "An R interface to the C @code{libstemmer} library that implements Porter's +word stemming algorithm for collapsing words to a common root to aid comparison +of vocabulary. Currently supported languages are Danish, Dutch, English, +Finnish, French, German, Hungarian, Italian, Norwegian, Portuguese, Romanian, +Russian, Spanish, Swedish and Turkish.") + (license license:bsd-3))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:56:59 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:00 +0000 Received: from localhost ([127.0.0.1]:42870 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhH-0008CZ-DA for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:59 -0500 Received: from mail-wm1-f51.google.com ([209.85.128.51]:54616) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhE-0008AL-MO for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:57 -0500 Received: by mail-wm1-f51.google.com with SMTP id g1so3392604wmh.4 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:56 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=mmBEXyYJ3NwN6Pq1cEJYBvtVZsJ/oF4p1/d8dQQ6OdQ=; b=Nnp9HOlnlP9IUZi0PpWdERfnDVw35N/vsI+13Z0pBV+4dvQxOUl+p9Y5BlHqr/Ewih OeCIrLvDOQsbdnBFJdqc5ZZ+Dlo7Fq+7AT4CiTPmRh5rt0DvZC+GzZbnxRhaIy8/knoI hURcax+l+I/J9wibabcALSFgosdEksUiADZOx0C+AvW4HnHjVo92oNPRPsnNkwYOPF/Z zsrIF1uFW8ASJP8RlT3b+Wsh82lLykDEeHHC7QtMRkzaMY1HVHU8KlMCLXRAwfgLG5Sk iH3P9Iu5+3iSQvveztYO++8+lXdxaxds94Ph0HMSNSfJZ9E8t8PTVqaqlWukRBgrprIV UYEw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=mmBEXyYJ3NwN6Pq1cEJYBvtVZsJ/oF4p1/d8dQQ6OdQ=; b=h4tWn1Y+zvDiNLgN05oBDMgU0j0ymS2aMgsQOEwaBsQtHnDf2XmaL8WIPCL3V9Km/e Gx4GmFXPOlsd2NH5zH/NHrX7mAjXs3kOSITxJd6AFcApSUtqFWrrWZCsv6rmYV/Ji1FH qHeVoLfL+ayscRDzW40pLpyX0OCrbbUtnJ7K2UqlMOvshE8EEp5onw6//4HVHae/qsS3 t/u5TEK7wCUz03Z0xj3Auv7yZal/oHX8+CHpoB0WRMxRQSFM7DkDFoZdhrRhkVOPkSdE MxHFw5PFmQA0nQ9LFrYnW1xrqK4GPNRTEDoO8ohOgBhBb68l01YlHh8BEhDY46TMTCdr eyOg== X-Gm-Message-State: APjAAAW7J9yWhkVIWKvGHGKOuzl+//sdki4IQxO4N5uRGUVs8TzB+ctX USoYeMiGtSCvsHDzEtrCV0GkbjxVBeLK8QJVBeNdx8zihA828LWJDMimNziZydruAPwreizSB/G cYRGiEFOUgyxhoOyfNsff5eI/kQVth9tMmySMgI6bBYJSwxUOe0vp/AtrMbKcdZJwuPTQGaSHBQ RxiSCXCIpU X-Google-Smtp-Source: APXvYqy7GLf28D0cgoVfZnNaKsDQXHabfYySJOp/NGr6qKzVXtx6pBovmoUbNzP6F8j2DqqW6E7uMg== X-Received: by 2002:a1c:e246:: with SMTP id z67mr6369407wmg.52.1580824610774; Tue, 04 Feb 2020 05:56:50 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.50 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:50 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 10/34] gnu: Add package r-topicmodels Date: Tue, 4 Feb 2020 14:56:02 +0100 Message-Id: <20200204135626.28261-10-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-topicmodels): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 917b5df643..9e5006b5f3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19513,3 +19513,33 @@ co-occurrences, analyzing keywords, computing feature similarities and distances, applying content dictionaries, applying supervised and unsupervised machine learning, visually representing text and text analyses, and more.") (license license:gpl3))) + +(define-public r-topicmodels + (package + (name "r-topicmodels") + (version "0.2-9") + (source + (origin + (method url-fetch) + (uri (cran-uri "topicmodels" version)) + (sha256 + (base32 + "1757r5x8bsl4dk106xg6481mvdkdz9vwg87n7rpbvdkavsvhyxs0")))) + (properties `((upstream-name . "topicmodels"))) + (build-system r-build-system) + (native-inputs + `(("gsl" ,gsl))) + (propagated-inputs + `(("r-modeltools" ,r-modeltools) + ("r-slam" ,r-slam) + ("r-tm" ,r-tm))) + (home-page + "https://cran.r-project.org/package=topicmodels") + (synopsis "Topic Models") + (description + "This package provides an interface to the C code for Latent Dirichlet +Allocation (LDA) models and Correlated Topics Models (CTM) by David M. Blei +and co-authors and the C++ code for fitting LDA models using Gibbs sampling by +Xuan-Hieu Phan and co-authors.") + (license license:gpl2))) + -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:02 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:02 +0000 Received: from localhost ([127.0.0.1]:42877 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhJ-0008DJ-V6 for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:02 -0500 Received: from mail-wm1-f43.google.com ([209.85.128.43]:51356) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhF-0008AO-It for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:58 -0500 Received: by mail-wm1-f43.google.com with SMTP id t23so3429287wmi.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:57 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=BeiCMCMVXoezcE+/42DVo/CpKfb581b0QrQmi44Nq0w=; b=x7sx7WRbylRUqnnefYEdA4sYo68LVormVPLwz8asLTF8EN8CLAvRk4OL5GCQ1ZrXHz f73ZVt34jwyKWVzfmjsgqB8frkaIyj3nC7F40t7y/S4eFRkz7WRjI7whBIiAd/t3rj8F m4cmu6slD6hsQGxAmnOZI0D78qfwUBX4uSzhqfVh4Qz3YvYFuyo7Wlzf2U389L0Pc1zc l0HVik9i2U0a7QxyrsAb2jBWZaI+H4S7WjdYxkNUv1LkgRBWzQJmVGX0fYve2Ee3qnYV 1RracjUa3YkMM1z+zoxKqevGAB67pc1uu1BsB+gZnpAofkdcTpqQ2iXgBItHYMGOEJjQ Mxxg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=BeiCMCMVXoezcE+/42DVo/CpKfb581b0QrQmi44Nq0w=; b=hV+Y0ZFjf5iay0N1fXgqr0nL/nPTM5Kk9ZRwjXnvrnv+R6UcL2rD/5cvfzBP/bSUkH jKjh8C9wStTVYWZgrVPgaf9PGSodvTZcux93ikelzc9u6dF4UrtU1UiU8fUVtDoK0Zdd boO2jT9k8EEcv/9SPCODfM7e3TfqP3JA3H7gBXCYEyGD89PNsU+Qj4OaAqOM1x/EEToF 81bMtSD5EcyfOP0w5/Tt48nIIJazDbG01IWcbOChx60DZlfV0F/ZZeIXRZ4wGBZbjaeA b8mcQHebl62lXT/UL9JwQuY2wuCQkiPMGYZJHbEuzkr06aTR9GOr2IsfK682lLJfJC8k QLaw== X-Gm-Message-State: APjAAAXUnw31vFQxyEuL20vaYLhfDxRsxpCyeJJrzxQqfSB5N14cbi0i yaq0UX3zR/q8dqyAG2wL9f4pVcaoD/mfyK0fmGJvoPrBk2tpBKYeJ0YkVyOQiEExON9jNsrTa7d kZ42UquGMtDzFHoUnu5BVP2322zcZez0NGN6ha03A5KpSq5TZBxnRoKrFqewmG3SiuRvLw9F/0Q y6pNx9zCXj X-Google-Smtp-Source: APXvYqwvOIqJg9vEspRnuw/h+Q1o1mtvMOM/6Q5KZlo7SFaN2oQJBYEJt8h1eRl0JpO5q/eTFePjgQ== X-Received: by 2002:a1c:a5c5:: with SMTP id o188mr6337927wme.73.1580824611422; Tue, 04 Feb 2020 05:56:51 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.50 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:51 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 11/34] gnu: Add package r-stm Date: Tue, 4 Feb 2020 14:56:03 +0100 Message-Id: <20200204135626.28261-11-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-stm): New variable. --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9e5006b5f3..4b7ce21b1f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19543,3 +19543,40 @@ and co-authors and the C++ code for fitting LDA models using Gibbs sampling by Xuan-Hieu Phan and co-authors.") (license license:gpl2))) +(define-public r-stm + (package + (name "r-stm") + (version "1.3.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "stm" version)) + (sha256 + (base32 + "1yyfxaxqc6yq0yq68zhdnhpwpvsyp71dlmivn7zxixfmp932s6cn")))) + (properties `((upstream-name . "stm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-glmnet" ,r-glmnet) + ("r-lda" ,r-lda) + ("r-matrix" ,r-matrix) + ("r-matrixstats" ,r-matrixstats) + ("r-quadprog" ,r-quadprog) + ("r-quanteda" ,r-quanteda) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-slam" ,r-slam) + ("r-stringr" ,r-stringr))) + (home-page "http://www.structuraltopicmodel.com/") + (synopsis + "Estimation of the Structural Topic Model") + (description + "The Structural Topic Model (STM) allows researchers to estimate topic +models with document-level covariates. The package also includes tools for +model selection, visualization, and estimation of topic-covariate regressions. +Methods developed in Roberts et al (2014) and Roberts +et al (2016) . Vignette is Roberts et al +(2019) .") + (license license:expat))) + -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:02 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:03 +0000 Received: from localhost ([127.0.0.1]:42879 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhK-0008DR-BE for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:02 -0500 Received: from mail-wm1-f50.google.com ([209.85.128.50]:36805) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhF-0008Ab-T0 for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:58 -0500 Received: by mail-wm1-f50.google.com with SMTP id p17so3793689wma.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:57 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=YswItV3KahX2dxOPQlPN6iE/BFRPaANvcAESR9yUZJQ=; b=dJKzsFDNnO2a+JvgbFH/ZvB4AzzIBo8AHrRLmeCgf1sruvuhQp+As4amo03b9IuDWQ vNsCBKZG8/+qFnwVzY5W9nWWjIjM1LoE8F4RldCs/odj0F9moVl/Jgy9+XKBcpeyt5HC 8Y0bUeMcvNVuBp7LCqN31r0WIjNgtrL4Jm7TaiZH4zTLv4f+Qd/1ShVYG3uC8umOUGUv EpIPKcwmovP4CXM+aB+Sirux4endgSyu1/sTvNR2yhAj0DDTaCA7xtCllqq3U9JctDUV +bIU/A27v16+PnNn3EQNbaHgRBQsI1g7qOt07YglSqJe8jgwU9HOp89rm3Umcc6qfWVb 9QPg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=YswItV3KahX2dxOPQlPN6iE/BFRPaANvcAESR9yUZJQ=; b=sTvOk/XzePLKK1jo+A6DYpipeIfi3s6m6iHyL2NPI+xhH46QpvMlzUAQQeOpivp/2D 66J19sHYWNARbVBeBfsv/Mq5kSUSNWNb/TdWLJFqaAVTJLiVrqWQ9PzQxkIHBUewGuLv UkogVaPPZvrgI7QNoMqZkhq+CF6Dm5gU1j40BZSck3fnudAhfGiCqSsBEtJch+xAD3v0 GIV+mMD3Jjl1nJJoN8pFEaIjaivFmq7Dn6/W5Qya6QcZuVI1bS+mwRhcc+FonoNRadok xzlzsHxstqX7ZBifslIxwbLq670fKTu1XYlCmH39A8R1PLbH6iKwi9RrldiM/PgsdeTO q/Pg== X-Gm-Message-State: APjAAAVQVY9yVRdVsGs4Zjk19x7OlE0H5WTkJKBB0xZvAinLwiKCLkHR o+IuD+/Jz5gvGwF3WJaTqzMDzfX0z3M2KWRE/Zh8vo993eMowHir4s0p4qqIG+LwW6CnC2Ylzba 74VfjsRiSMa2N1S/Xl1dqFU/Sc3H0pP8ODzVPbyPLSy0fizVgYEEMDBOIy3teh0hG9baYsHURRL dm8IZrBjax X-Google-Smtp-Source: APXvYqy00Vxc9+dVrY990G4z0V4uanxIZNxT8ZIAUyNgo8J5ssGyNswZ1gCuqQYdkThpe9rHy0YXSw== X-Received: by 2002:a1c:f009:: with SMTP id a9mr5945053wmb.73.1580824612046; Tue, 04 Feb 2020 05:56:52 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.51 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:51 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 12/34] gnu: Add package r-polycor Date: Tue, 4 Feb 2020 14:56:04 +0100 Message-Id: <20200204135626.28261-12-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-polycor): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4b7ce21b1f..8c436d4c75 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19580,3 +19580,27 @@ et al (2016) . Vignette is Roberts et al (2019) .") (license license:expat))) +(define-public r-polycor + (package + (name "r-polycor") + (version "0.7-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "polycor" version)) + (sha256 + (base32 + "0wzwzklflbhi8sv9m7ijwr16v9zmkk0j0v4pbcpf32f8lbn3psna")))) + (properties `((upstream-name . "polycor"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix) ("r-mvtnorm" ,r-mvtnorm))) + (home-page + "https://r-forge.r-project.org/projects/polycor/") + (synopsis + "Polychoric and Polyserial Correlations") + (description + "Computes polychoric and polyserial correlations by quick \"two-step\" +methods or ML, optionally with standard errors; tetrachoric and biserial +correlations are special cases.") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:03 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:03 +0000 Received: from localhost ([127.0.0.1]:42883 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhK-0008Dg-Ua for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:03 -0500 Received: from mail-wm1-f48.google.com ([209.85.128.48]:36805) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhG-0008Af-HS for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:58 -0500 Received: by mail-wm1-f48.google.com with SMTP id p17so3793725wma.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:58 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=neHS5s2fFyrcm4kp/2bLFi6uy9BTDszVRAIPPQ6hteI=; b=ObCzVLbjtiNsyKwPFqTPv7DMoFQHrG4E+H5HxnKa8L/RDTYQw/aOXiEyk58SYzC68y FcT3jBbMUFnX8uyQEmEpV/pH/oRh5oqJVZ+xzrByikCQ+DyzAAXD+M+gnz0qrU59mzaY MlTE2TwX1LSd+Asf65GS19mMX2O3MtfdtUcTvgM4aFfuRoHug3m0ifidaMQcnaUH4fuF bgHDTXqrHWduVNns5YE98HLQr+Bnyl+RtKuvpY4EakrAGy8sJlKvd4uEN6M29Pu1ADyT cMqqjx1X8FFX1I6aeclS0uk42N8ydPxaSY/q/cl4gk/Sv2vjI1oZqW3KJii2GCbc72RX 2VqQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=neHS5s2fFyrcm4kp/2bLFi6uy9BTDszVRAIPPQ6hteI=; b=OatTIsJiWMCdlV7N+YmTRhi1HRyYg9NXEVrkoXWz5kUGPccCaMkdKLtC5ROvxAn7Nk nGZyvP74MqmOt4RkepUjTbRUl+U5Acvs1/ewN+z+fe3GVBBX3SaGd75JerosqI1ViEBR ZXo0Zp5+OMSCFrDXUlchGf0CU9LKryWWK4Dnfx7DrG9Ru74WIvoqzku3x9inaIgoBvPv uUb9Po943hGw/CHn8+hVnahjWA5jx9onlfRZI5pcEAQ5+d9xXMf0SYK/8MFm8Rhgbg6g 0f3f/1j+6QYrOe4SKi/qtz5wJK7JeCUJPbMQbLvIBLvSnBgCsP5NZ6RYcbCYblrWy4Yq LgiQ== X-Gm-Message-State: APjAAAVNyjV9ZoEg9lE8mdBZ9r9KbNoLnUMggpZSPdN7ge2hDPmNBr3u nbYtBDef8gZxFvk9ayJLDEhhFzrXxqmdXEc5aestGaCJXdRAjJKjTjAA8Lpg8liBiHe1yqrX8Nq NmaDGmCQWBSSlOoPeyWdFnhK6OyKZ6QBErwpBxqhhmAJmHb8XjGpzCPur7NlhWtt18SZQTiOWg2 VM1llt5msk X-Google-Smtp-Source: APXvYqwkvdY5cDs6jsO69yNajsjjIewchDt+FqIP2vh85h+lyq3TEUxLzrqkXKi3vEmgBVeH92rR4Q== X-Received: by 2002:a1c:7c05:: with SMTP id x5mr5940252wmc.15.1580824612703; Tue, 04 Feb 2020 05:56:52 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.52 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:52 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 13/34] gnu: Add package r-msm Date: Tue, 4 Feb 2020 14:56:05 +0100 Message-Id: <20200204135626.28261-13-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-msm): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8c436d4c75..8606695b7c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19604,3 +19604,32 @@ et al (2016) . Vignette is Roberts et al methods or ML, optionally with standard errors; tetrachoric and biserial correlations are special cases.") (license license:gpl2+))) + +(define-public r-msm + (package + (name "r-msm") + (version "1.6.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "msm" version)) + (sha256 + (base32 + "1d32y8f0vb2dfv3999liigpns788j145nrvd1xpxb9i2lsg8mwgk")))) + (properties `((upstream-name . "msm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-expm" ,r-expm) + ("r-mvtnorm" ,r-mvtnorm) + ("r-survival" ,r-survival))) + (home-page "https://github.com/chjackson/msm") + (synopsis + "Multi-State Markov and Hidden Markov Models in Continuous Time") + (description + "This package provides functions for fitting continuous-time Markov and +hidden Markov multi-state models to longitudinal data. Designed for processes +observed at arbitrary times in continuous time (panel data) but some other +observation schemes are supported. Both Markov transition rates and the hidden +Markov output process can be modelled in terms of covariates, which may be +constant or piecewise-constant in time.") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:04 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:04 +0000 Received: from localhost ([127.0.0.1]:42887 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhL-0008E0-Dw for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:03 -0500 Received: from mail-wr1-f45.google.com ([209.85.221.45]:34525) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhH-0008Ah-BL for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:59 -0500 Received: by mail-wr1-f45.google.com with SMTP id t2so23194723wrr.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:59 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=1OxDaIyx9m4QyW3McxPSEWFcRWW0CX1EPayPSySoFxw=; b=PAkvcdD8q4H42gNGwrZ7mCvx910uXowofb6J6YQR/JfMrvOMc4zKcTj+f1t8JxJdyU NWP4ohYpTJwyH7zS437YZqWjaYiGRWbAWDEhMdB/tmwTDFup1Uh+6hBLC3UMRC/t9W+z Fzq+UrrKLp24PJp79/qOwuGyzoxIPxfMqq0A7SDPghZIDNE2XRnBZWIhqQd+FaLLF0cV P5RmzzxYtAuK+67erHb+b9u3gbjYbPFoWK1pjkLed72t/36UdLMSX9SVetY4Z+0DUuyE 3U1b3kyFULVDFNkW9MjEJ2ArrRCJmShI0NXcddZ+/XtbsUA6j2dxqGNMTglFUF57YuP5 zKeA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=1OxDaIyx9m4QyW3McxPSEWFcRWW0CX1EPayPSySoFxw=; b=U5tm2IT175rkw2NWsrDwUsDtWH+lWuru5nK4clqedsqZZOjn+h9p1WJ3GEJWtTV/XB 3vyl1rUGeuhwTji4NcvslmGohUVPPSulZV8Qvozk2NnxVeVYLRbdoobtz+2KjVsSCyY8 2pY+XfYI4kjDTJoVh5/mi3JE00bEqRKIu4WySFPRTwCsSAN2rZAKq6uIloWCzuUlBrp2 QH4BwZLhA2gALGn2nMEEPoa0eAm0jgCcnmY6IxK9U0tJ0R44TLnuhU8VTo0yIXPqezsw BDoO4KgDNyp7n4vuzMDysBHM9+eH46vXZdH+GTQK2m1bFDLNTO6IRPvMb8FRdLfq4bxS XOMA== X-Gm-Message-State: APjAAAUhoSEaGYgzxWvz8oyEcFUZjd2dTs1vNTWJkLr0Jzwngmc2wSns 4NIbrEZnKa3MENF23zEjAtsPSr7QET7TuEPASBRb2IivChVwobKb6quS4NCXYHHHFwrslyDsSkv o3wuUpIzwl0yiyyb+Gd/Sgqlz2vSCFi2k4giV6yBKhXmGFwii8M9H+xQsYwPdD5e4OA6UwxCJo+ j6oZespOwi X-Google-Smtp-Source: APXvYqxVXeYE4XNPtJRMNhoivbFJTFo/2+1jFn8MWOp1xrd5Pg7NfcyV82bdWjA3QEhsH4snZWxZbg== X-Received: by 2002:adf:e5c6:: with SMTP id a6mr22955694wrn.185.1580824613389; Tue, 04 Feb 2020 05:56:53 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.52 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:52 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 14/34] gnu: Add package r-ltm Date: Tue, 4 Feb 2020 14:56:06 +0100 Message-Id: <20200204135626.28261-14-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-ltm): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8606695b7c..73dc753945 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19633,3 +19633,30 @@ observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time.") (license license:gpl2+))) + +(define-public r-ltm + (package + (name "r-ltm") + (version "1.1-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ltm" version)) + (sha256 + (base32 + "1qrgzwx5l58qf5rfp1knxc84r0g943q5sdr3ky74zzwpnmrf2vf7")))) + (properties `((upstream-name . "ltm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-msm" ,r-msm) + ("r-polycor" ,r-polycor))) + (home-page "https://github.com/drizopoulos/ltm") + (synopsis "Latent Trait Models under IRT") + (description + "Analysis of multivariate dichotomous and polytomous data using latent +trait models under the Item Response Theory approach. It includes the Rasch, +the Two-Parameter Logistic, the Birnbaum's Three-Parameter, the Graded +Response, and the Generalized Partial Credit Models.") + (license license:gpl2+))) + -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:04 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:04 +0000 Received: from localhost ([127.0.0.1]:42890 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhL-0008EA-Uq for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:04 -0500 Received: from mail-wm1-f46.google.com ([209.85.128.46]:36806) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhI-0008Ay-26 for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:00 -0500 Received: by mail-wm1-f46.google.com with SMTP id p17so3793802wma.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:59 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=6+CcuWfv8QrqczseZdTH1nrvQ/Ekfk6xglHfJw4PeYw=; b=METSPY/pfoylmCn2G+ohjhQSteM6duHhaVOWMT64hsb2GkLrXuKomVvwnmsyDYqTBA NcV1rs0b2mjeA6ubGzVFDuSbVkcXAxiAn33j9ey0/TCQBbal8HsFy+3AXg5rVApjBH9Z yZ8eH8VwUPDawpWsjxqH6J1pQwO8su246lYzKQEqR3lAglGrmoyK3U7G4OQsDp6Dg6ZM KkzNhW5K5djFtiurnqUw+NVlp1msVqV7qZTBifF0aJZ51Mzfl/ls09KFCRWf5fQh44NA q5vAopiapVlOm/lILX5ZmZAwUtxqOoWeeAFgI7b4F9S72QyPBCIn0LjzFTG9flwylsS4 L+WQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=6+CcuWfv8QrqczseZdTH1nrvQ/Ekfk6xglHfJw4PeYw=; b=fq6sgQ8ZslGqC7k275SwgKjcDRmA/MxaymJv5xgfdRHG9FptdA0SQ9V5IbodjvCCZo tizehMMybjhXlSIjI2xFQHr3tGoFATt7q9utSZ0iZWkmOAITImQXXaMlpI6MDn1B/T0Z aXkF5SyMnmz1yDO06cH06qiPumyrvu8z1Rm5a2f5b62KGnVk2e1pxRLhAzv3WjXDAW14 FcQdnGkjdnA9nCAd9gdigtc4e+jcy/Ncl5ILNfrMDbEZAXtgliHwY4KlOTEuw+gmEpLr Js7ZMwbBXfQsPjrpwjql22F6vK0Im10ihT+RzGHJbv1zhol1e0nGDwOT1whwA7z4FPTg HR9g== X-Gm-Message-State: APjAAAXFpimTjWecB2dVIWbu1dsYWfSRBCxxu50CoqM00pQldhSeXLPc 9yObUw1aCmf2ZVVaPrzirtS1TjlwzWcaOEUQ/PJy6vVa/l/XGmfZ/cY3bhO63ZRPEusy872iRIN /m5qDHCOigak7oxc4uAK9enWDZqn0/b/EgMZXnxRKXH8+72j1+sMLuqcdT8McBQVeAD3Bvr+7tw XKeRbgJLlD X-Google-Smtp-Source: APXvYqyPJ399m/7bx1jvCtCEekr/I/LOf0AQmpn4BtOITP684iAttB2Q3/Br0JPr8qUl5hb33SCU5w== X-Received: by 2002:a1c:541b:: with SMTP id i27mr6444352wmb.137.1580824613983; Tue, 04 Feb 2020 05:56:53 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.53 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:53 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 15/34] gnu: Add package r-mi Date: Tue, 4 Feb 2020 14:56:07 +0100 Message-Id: <20200204135626.28261-15-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-mi): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 73dc753945..b26b63afcb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19660,3 +19660,25 @@ the Two-Parameter Logistic, the Birnbaum's Three-Parameter, the Graded Response, and the Generalized Partial Credit Models.") (license license:gpl2+))) +(define-public r-mi + (package + (name "r-mi") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "mi" version)) + (sha256 + (base32 + "1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l")))) + (properties `((upstream-name . "mi"))) + (build-system r-build-system) + (propagated-inputs + `(("r-arm" ,r-arm) ("r-matrix" ,r-matrix))) + (home-page + "http://www.stat.columbia.edu/~gelman/") + (synopsis + "Missing Data Imputation and Model Checking") + (description + "The mi package provides functions for data manipulation, imputing missing values in an approximate Bayesian framework, diagnostics of the models used to generate the imputations, confidence-building mechanisms to validate some of the assumptions of the imputation algorithm, and functions to analyze multiply imputed data sets with the appropriate degree of sampling uncertainty.") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:05 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:05 +0000 Received: from localhost ([127.0.0.1]:42893 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhM-0008EZ-K8 for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:05 -0500 Received: from mail-wr1-f42.google.com ([209.85.221.42]:40869) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhI-0008BC-Dw for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:00 -0500 Received: by mail-wr1-f42.google.com with SMTP id t3so3216992wru.7 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:00 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=sZUYHkbG6SNfSilKTbA/HvRS9VJuN/W2/qXyyctxIoE=; b=qDHRruudxtMviT5/5LINDrIH1rYYleNxuAR4eka1x2wN5D2UIIlWGGkWGe/JnYbOg+ ZdKTWRqnlgLVRvsfrcCaTa8o4tSiyXCsRvM4pbflxCvWsi61TSSEQM5csxNVW8ZOZo1d NExa4Cc0UtE61Eku3yoL02YNqW7saktE+x1pRRn9Ejn593IZQ0kpGm8vE38Rpb07x3Zi o2l4w/cWl/H6xO5wwwz65Ho09SZqP+trbfLujxQywHYSQlY7HsDJxlrKhBXTGPvUhEAB uT3CaW4scVT0P0+hG0DxX07yIP8yJ/tj1vuMxBBvK1OeKu6QQws8qwhYRUIqW/N83/k8 ydWQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=sZUYHkbG6SNfSilKTbA/HvRS9VJuN/W2/qXyyctxIoE=; b=buole8DWLss7dS5TTZqKNYY/aH3UnAeqOHsfEJWjQZb9V2bz2shUZjlqAOoux0aR2w NnAcu/jicBGD/JpcIcprEpDxc2oc0VFIMAo7/s8eT6Cz3tZFhzrRO2hvTGxyEYjQmV35 lDoNPJYiCdT7PYlFG/+wPGm9HNcgmvxJ93r9ClnBZvNd3JTjwm9kPWGe5C244NVqrgsO 5wok7vZrAfLCMNHdB6p47clXB9asBWke9r9L9fC+/jScwgBv5QekWNGYtiMZMERSbQ+S NlPZHnQS9OZGzdgyX/Fyc+B9oRJZIPLLevl7qByM+JwtskRlDjD2jdkBy1MuO23WcUc9 2D9A== X-Gm-Message-State: APjAAAXAE/v52FftTqVRHv6KQMiXwXTnVLgWZ/NzilRjpsu862zdrhib mO4CshCFhbpAYmrRIXH62xHyGRdena3XJLPP+oD92H6FNwZuqX31FI9MdJ+Sx2Qg4WwKdrb8f7r 2VNmN3s5XJuzRxSN1swwhjCJaX/xifcg3v/ofbRsnunbjRDTTSv8LDDJwtYQ+372VWjeZJlIDZu 7JMnhqHxKp X-Google-Smtp-Source: APXvYqwHHkAb9WV7+RYuDduJjup0+sEEqYayogOg0A9q/ctrtkverj2J7yoXKceoWOm7hHwDoOqFFg== X-Received: by 2002:adf:e610:: with SMTP id p16mr3827877wrm.81.1580824614569; Tue, 04 Feb 2020 05:56:54 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.54 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:54 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 16/34] gnu: Add package r-matrixcalc Date: Tue, 4 Feb 2020 14:56:08 +0100 Message-Id: <20200204135626.28261-16-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-matrixcalc): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b26b63afcb..81e8731383 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19682,3 +19682,24 @@ Response, and the Generalized Partial Credit Models.") (description "The mi package provides functions for data manipulation, imputing missing values in an approximate Bayesian framework, diagnostics of the models used to generate the imputations, confidence-building mechanisms to validate some of the assumptions of the imputation algorithm, and functions to analyze multiply imputed data sets with the appropriate degree of sampling uncertainty.") (license license:gpl2+))) + +(define-public r-matrixcalc + (package + (name "r-matrixcalc") + (version "1.0-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "matrixcalc" version)) + (sha256 + (base32 + "1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp")))) + (properties `((upstream-name . "matrixcalc"))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/web/packages/matrixcalc") + (synopsis + "Collection of functions for matrix calculations") + (description + "This package provides a collection of functions to support matrix calculations for probability, econometric and numerical analysis. There are additional functions that are comparable to APL functions which are useful for actuarial models such as pension mathematics. This package is used for teaching and research purposes at the Department of Finance and Risk Engineering, New York University, Polytechnic Institute, Brooklyn, NY 11201.") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:07 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:07 +0000 Received: from localhost ([127.0.0.1]:42903 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhP-0008FZ-5A for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:07 -0500 Received: from mail-wm1-f48.google.com ([209.85.128.48]:56286) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhJ-0008BQ-2F for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:01 -0500 Received: by mail-wm1-f48.google.com with SMTP id q9so3386211wmj.5 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:00 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=fiFdWRlxgTQeikqO+L16xowEsZd7fYLzllCC8RBZiig=; b=FJ4Hz5MdwWPNCBc6JI9I1ofc3L8H2jUYqTAqRhDxm9dor32sCO+Zgstw+ZwsUDwyph XzRJvg4s8kcEno38OIPeBj79Bfy37vjDpORlsbROOv8RHYwJmcm473z6xD+TZpQhrZ0e CVAz4mrWt8fjAdwqWMXf0IypHJ+7711AcRPoZupd/N3p+skaVNsiuHtsqSBfeswvEAXR C1LvgPCwBP5XFXGOvmNybbT6Bq4kP6+zaWKfN3n7hZlzwrGAX/+Gj3dfUo6HNjW8QKDw gpR1JsahQ34KqqVpXuIigDxwIMKc/LQV8a3LixKDTfTb8CBsJKn7uIPdW9nbfgTNJSsr SBkA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=fiFdWRlxgTQeikqO+L16xowEsZd7fYLzllCC8RBZiig=; b=N1Tiqq33WvcEg+8AOVG/qpP6PEs4wAxkoUbv4e3dT17GrB8CLzMaC6yePviGa/u/zT 5sCtWSyL4abIFZcRWW6QZAxIKuxr/yIFlKGR3bEAhTW6ADYS/a0mz6BdhUG5RQ6oMXMa zGgYHaEQNaUSml0KPC44o3NydRl1oHuVVEa9VigzwU5G1BxTpQSJa49XdfxKcx2+Scoe vEZwkmLE2fXwOFjFHhJaLpfwIfJTFAuiXiO6PPVKJTSL4uxCmLJUUV7KlOa6OB4wcjj7 vr1bVLmFeZlaiaadJsuGZC1pzaFhTAT5MleEAAn7/Hp9JcBEG3x6jjpb0xE59FiuIDld 1acA== X-Gm-Message-State: APjAAAXSi8EiKp2KR8AqfVeoh95fW2+qBkSNLpwsAOLMqtdqEdO5X+1e MNAPIktUnkHJJufGoZX49CytC/ZA5l8KkxhsBBhCDGIoIvn34Gf81TR+U+WcX3fpYhpQc5DCaoG 6qa5lMZDdPPkTcwmNHLGjWo40PCfKSOF4Uq3N5205i9VmPX+ulDpibsdX7M3T3v46J9HCD7Yz1x m/PDIM81h9 X-Google-Smtp-Source: APXvYqw7cWpKb1CWcYf7CGpPFrw7FxTe7rxvHzNZ+WDSTcOICHM5Ubz9Ble/BpbXMlZzhP1cBBKenQ== X-Received: by 2002:a05:600c:2301:: with SMTP id 1mr6131862wmo.147.1580824615195; Tue, 04 Feb 2020 05:56:55 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.54 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:54 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 17/34] gnu: Add package r-sem Date: Tue, 4 Feb 2020 14:56:09 +0100 Message-Id: <20200204135626.28261-17-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-sem): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 81e8731383..d318f2a33e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19703,3 +19703,30 @@ Response, and the Generalized Partial Credit Models.") (description "This package provides a collection of functions to support matrix calculations for probability, econometric and numerical analysis. There are additional functions that are comparable to APL functions which are useful for actuarial models such as pension mathematics. This package is used for teaching and research purposes at the Department of Finance and Risk Engineering, New York University, Polytechnic Institute, Brooklyn, NY 11201.") (license license:gpl2+))) + +(define-public r-sem + (package + (name "r-sem") + (version "3.1-9") + (source + (origin + (method url-fetch) + (uri (cran-uri "sem" version)) + (sha256 + (base32 + "1f9c6g6pfx66gd2pappcsqh484ah6a0x4z47hpd46rah0817hcsa")))) + (properties `((upstream-name . "sem"))) + (build-system r-build-system) + (propagated-inputs + `(("r-boot" ,r-boot) + ("r-mass" ,r-mass) + ("r-matrixcalc" ,r-matrixcalc) + ("r-mi" ,r-mi))) + (home-page "https://cran.r-project.org/package=sem") + (synopsis "Structural Equation Models") + (description + "This package provides functions for fitting general linear structural +equation models (with observed and latent variables) using the RAM approach, +and for fitting structural equations in observed-variable models by two-stage +least squares.") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:07 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:08 +0000 Received: from localhost ([127.0.0.1]:42906 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhP-0008Fo-Ij for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:07 -0500 Received: from mail-wr1-f41.google.com ([209.85.221.41]:42860) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhJ-0008Bc-P3 for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:02 -0500 Received: by mail-wr1-f41.google.com with SMTP id k11so23127692wrd.9 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:01 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=Ufm8cA19Ep23HT5zq4u0V7EqsatsD6VqhUoTeqr2a/s=; b=SCRIOXv9AxHVrFOvk1eTVlyJU3kGiNsB5Po5WmUmgiocF7F5G4Zs1XL1TIfO9Sbkj9 eHUUJSLHobCfkyfH91v07Wf95QbWTcbh3GfGc6Gh7Lz66VmBOEXK6cBaRgoeCvCTsj89 J5OO1xP5dno+6yBB3jpNHB8U2zke8LlL4d8FNaMuGz2Hs2+7jsLogYHkcuKigOrS+Rqm ZTT4cN0aocxr9QfFx9uNI9q+bYS0Mbb4CuYg/YCqS8haNAgiGEw3BNB8OVut5CBdSkTj vpp6W8sHsPUb2fg+Lc+lLqfgzOP25GzhmdCrT93B8/tbOT6fawJ9YudJROyUXYv/m6jH gYVA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=Ufm8cA19Ep23HT5zq4u0V7EqsatsD6VqhUoTeqr2a/s=; b=D32XcO8jIQCG68OrUpvTNWbSHdFVi2h1kSAP7Xynvag7NQDiz9M7dN2aHedQ7/5elw PIm77uLZ+FOIcgOxyGHG77J9RO2QuRI9YN1kVwSdAMHTkM1/tJZdxSwpUTwdsT58MotN cihklGIrUsZRDPqqophdeOYw+WNb8OGj5v5IkSpK/8Zbsv9gByb4HZ9Ky50BTSg8UQIJ 1i1UQ2b+Fvl4fNRqU/oKOOZ+MN5TByw9cBOAMm7jvfqU/ARZxAu8/2+0BCbYwJSlNmBO yxD1faFCEX6bPTXXdb5xEv3SIhymUv/h5kHCJ8yeVWjdor0q0NppKUrCX3+4RnU20pcv 0TpA== X-Gm-Message-State: APjAAAVTrKhL1Wc+vWrH8Mu4jzhjEqBYQTEG1/JfNAh+Q06KUYJOCPIJ O3ctWw5w5t3T7GO7BGtjYbXC5T5zXUjUQnTMHX0XpKod4nKUteUx/zSGTiBK+E8pDliBopNJTVa vjfH85gmqbXQMrd3KUNyWkr46rKKApXzhVMEVArIiXvgLcOMuXfX8hl3GWxBYsD2GEN97F+0E3k gYm6Z69YP2 X-Google-Smtp-Source: APXvYqwTLd3OgOGg8fzGowbWdEJq8qrnd/try9ViAnd06Sup/7S5gnqsNcwRN8SEzLYal3JegHe5uw== X-Received: by 2002:adf:e8c9:: with SMTP id k9mr22583807wrn.168.1580824615911; Tue, 04 Feb 2020 05:56:55 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.55 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:55 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 18/34] gnu: Add package r-semtools Date: Tue, 4 Feb 2020 14:56:10 +0100 Message-Id: <20200204135626.28261-18-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-semtools): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d318f2a33e..100d9bd4dd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19730,3 +19730,25 @@ equation models (with observed and latent variables) using the RAM approach, and for fitting structural equations in observed-variable models by two-stage least squares.") (license license:gpl2+))) + +(define-public r-semtools + (package + (name "r-semtools") + (version "0.5-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "semTools" version)) + (sha256 + (base32 + "1zj841pszfsikzp82cmh463qyc4xhdrqjqcnhc2r8mcflv12irv6")))) + (properties `((upstream-name . "semTools"))) + (build-system r-build-system) + (propagated-inputs `(("r-lavaan" ,r-lavaan))) + (home-page + "https://github.com/simsem/semTools/wiki") + (synopsis + "Useful Tools for Structural Equation Modeling") + (description + "This package provides useful tools for structural equation modeling.") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:08 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:08 +0000 Received: from localhost ([127.0.0.1]:42909 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhP-0008Fv-TQ for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:08 -0500 Received: from mail-wm1-f44.google.com ([209.85.128.44]:39587) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhK-0008Bi-Fo for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:03 -0500 Received: by mail-wm1-f44.google.com with SMTP id c84so3764443wme.4 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:02 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=OEsrcNtMQmA7rntVutW5o4rK+zVPReQnBcPBnUPDelA=; b=H2lWLiQCRafP1IB227V6O+N82JpB9zJcTT8G+l4oxdykOtmkYuXlYwoI1AnLsmWlsN VXo385AHCW5Wdhxk+pCJt/IVUOknzMHLKg+9DNdxZWwPI8FArYpp5rqcQ5ns9XuKZm4s KvgOR0Ckun4uG73UrRC2K6Ct0mL2jboxHULICCuDlJQS78+qomNluYK6FO9TRL/DTTFM V6CF7wapV65giLu6uYO/UoYhlfgWLn5rKOsXC0umDZ8DDFv6KbbB8IqZuT+mWcGpe/w4 Y2SsN2+LdfNvXkXqUapu/FecI5EyVSNEvlLWMOVjirZrtApzgG3f78jDoBgUS8O0Gjq7 g81A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=OEsrcNtMQmA7rntVutW5o4rK+zVPReQnBcPBnUPDelA=; b=DQvIE5wMZ7XSLrSeiNhiA8bCbLPUhMgRJ4ernMH61hkGgShcy37tJlJ5NTCYl0st49 IPdfmOV0LjY0Eq5We6qRDvZ2ewE+1RIVivGHMTCNzS9JihfvMjsflQ0Uz0CRbE0qyUsK FtNAGout0KIl8qgeHgLoXlBKuULiE7y5KO7nDWU5cgDsKhzcqXCvmc2C/sqxga0gJAYg t72Gr0k8Ge7qYjKcrz0HBB9DT7Bdf8FLACC6Hpd5asc5OdHI5UE1jfJghR12y63lwRdz sa9t3h/AciiVWiVbrdrp6qDpChyyOLn1vNOk4kQcTzpF/vlLvNyg5SjM7dACI5Gm+efs sP2w== X-Gm-Message-State: APjAAAVq0g8cZd/FlyzEB9yBGmI35W4yPVlUAcfb1iPARiWcaPuwQ8rl i3AmF9Ps4BS0BctmWvX+4jUoVUabXxLZnm405aF11OQT1uFs18Hrf8b5ET8Cifu8xYDXEhMhCjV iiqKJY2EXCGY66gz2bWJDaHxRB77kVITxhTGLSg4llozzuRKbk8AvPBeY8RgkCBj8fMfsXE6g4/ owJrgwsZwc X-Google-Smtp-Source: APXvYqx+Bh5EmNAKCWGOQtFZI7OBMJUUXiGSueuy5Jn3+1T8pfzGWXzHL7YjdOpD4O6LrlSpEwT4Sw== X-Received: by 2002:a1c:7dd4:: with SMTP id y203mr6085459wmc.67.1580824616526; Tue, 04 Feb 2020 05:56:56 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.55 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:56 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 19/34] gnu: Add package r-regsem Date: Tue, 4 Feb 2020 14:56:11 +0100 Message-Id: <20200204135626.28261-19-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-regsem): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 100d9bd4dd..cf230ec076 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19752,3 +19752,33 @@ least squares.") (description "This package provides useful tools for structural equation modeling.") (license license:gpl2+))) + +(define-public r-regsem + (package + (name "r-regsem") + (version "1.3.9") + (source + (origin + (method url-fetch) + (uri (cran-uri "regsem" version)) + (sha256 + (base32 + "1klml4bp76mplipxaca7fk653cjxgdmmiciksxgiglxkzmf2bdps")))) + (properties `((upstream-name . "regsem"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lavaan" ,r-lavaan) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rsolnp" ,r-rsolnp))) + (home-page + "https://cran.r-project.org/package=regsem") + (synopsis + "Regularized Structural Equation Modeling") + (description + "Uses both ridge and lasso penalties (and extensions) to penalize +specific parameters in structural equation models. The package offers +additional cost functions, cross validation, and other extensions beyond +traditional structural equation models. Also contains a function to perform +exploratory mediation (XMed).") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:09 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:09 +0000 Received: from localhost ([127.0.0.1]:42911 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhQ-0008GB-CW for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:08 -0500 Received: from mail-wm1-f50.google.com ([209.85.128.50]:38830) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhL-0008C0-83 for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:03 -0500 Received: by mail-wm1-f50.google.com with SMTP id a9so3773247wmj.3 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:03 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=JiwObhW2ASHnRn5Q8As3vr4orzusuFfdM4gWQi5AZjE=; b=SsaA7eJMicUnori2mut2hTXmXS/o8mEWgeecff77959/lQc/rLMCj2V2CwVrtIq5Sp Yo6p/exF0fEDp1U6SW4BikwQv/V45kWF7hTHwbOvWyJqSocxu1xmL1rn8u3qCwGUzCY5 nPL+QTi27tkdrv9byRuY0A/QdJA0l5U2G/9CGJkEx6oOIOOKaOU/UwsEPwkP6JGdzCzu 12cXDF0bt9rwj/x3BZrKB9dZqlho7w71EAg6cJDjT5od+I/EaorQzrmzeH2fecr8j1VO IMDycwe1AUOHrlelhhr/ObZaL4v2uMht4ht2SWmcBD9BdxCui2Uan6GVTDbW5AI71/wh nU9A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=JiwObhW2ASHnRn5Q8As3vr4orzusuFfdM4gWQi5AZjE=; b=iSC/jBsHslDkNlzm1YmwZgJRuiq33au1g/tA3585PEqMllhePwdV+ZMy1lCjW5G45U 3JnjN5/LF6VJiep4fyO3gBH1ict7Zr92koLFaNUkRcsVNeJGfsAVD+GZvfJVnkpV7bV9 QULAtAk/QhKFgbcw4E5IaLf/0CkqHjWzaBs9SSUpnieOMY9ca7O+kYi9zlc6IbTifxF1 C087HRhjMGJnD8J8h0OvzKBNG78JO5DN8w4rKtDQQjuUcm1GBbttnsEC1/REB1KgsZFY obM8QAamGxl7C7son23K+2WCRwtOkvrNcYVE44Z6YwfuhHu7l+amekgxUQ7hpYAJJ92a hveA== X-Gm-Message-State: APjAAAVHGAifaxVmlCsIgwtS04SuUq+4Tl/2BMT8aHJ5iVee1YtyHkq/ j6C2si+wcgYIGcF/tuQWo+kFbMQeeCEMmnmMZUfUtVQMB7ttaEno6mUV7JitQo87TbaSUR7b7SK by02vNNqEPhil4FVjihFG78dOlH03noRNyeMBAnhs3MvCsLJGClJAdai+GPWlAQZBKvEGhiVpeA c6JKFznQQ0 X-Google-Smtp-Source: APXvYqwMRtH4VNGCCDL4WmNwMmhYPoRwVw8mAExGEmZtO+fBoCqJRVhgw7NzMfdH9T/fGu1l66WFKA== X-Received: by 2002:a05:600c:2551:: with SMTP id e17mr6121390wma.187.1580824617229; Tue, 04 Feb 2020 05:56:57 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.56 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:56 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 20/34] gnu: Add package r-stanheaders Date: Tue, 4 Feb 2020 14:56:12 +0100 Message-Id: <20200204135626.28261-20-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-stanheaders): New variable. --- gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cf230ec076..47acdf95ae 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19782,3 +19782,38 @@ additional cost functions, cross validation, and other extensions beyond traditional structural equation models. Also contains a function to perform exploratory mediation (XMed).") (license license:gpl2+))) + +(define-public r-stanheaders + (package + (name "r-stanheaders") + (version "2.19.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "StanHeaders" version)) + (sha256 + (base32 + "0kyka130sin4nbji7p840394ynhmaynv9jyi94ddbplj83i2nhx3")))) + (properties `((upstream-name . "StanHeaders"))) + (build-system r-build-system) + (inputs `(("pandoc" ,ghc-pandoc))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://mc-stan.org/") + (synopsis "C++ Header Files for Stan") + (description + "The C++ header files of the Stan project are provided by this package, +but it contains no R code or function documentation. There is a shared object +containing part of the @code{CVODES} library, but it is not accessible from R. +@code{r-stanheaders} is only useful for developers who want to utilize the +@code{LinkingTo} directive of their package's DESCRIPTION file to build on the +Stan library without incurring unnecessary dependencies. The Stan project +develops a probabilistic programming language that implements full or +approximate Bayesian statistical inference via Markov Chain Monte Carlo or +variational methods and implements (optionally penalized) maximum likelihood +estimation via optimization. The Stan library includes an advanced automatic +differentiation scheme, templated statistical and linear algebra functions that +can handle the automatically differentiable scalar types (and doubles, ints, +etc.), and a parser for the Stan language. The @code{r-rstan} package provides +user-facing R functions to parse, compile, test, estimate, and analyze Stan +models.") + (license license:bsd-3))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:09 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:09 +0000 Received: from localhost ([127.0.0.1]:42914 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhR-0008GP-0Z for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:09 -0500 Received: from mail-wm1-f44.google.com ([209.85.128.44]:40692) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhL-0008CD-Mq for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:04 -0500 Received: by mail-wm1-f44.google.com with SMTP id t14so3760954wmi.5 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:03 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=YFOF6bYOAB1MFt9IG/lk8KgdxGJhHNch3ljeZklR3LI=; b=naKEr2K8C1CFdLHghMozPeeuEaGAWZSvcrALRL3CSkMsrAXDeVzblWXZUN95dEqkQH XM7PDI9pQ5hfVzsArj8VKwaCXOR05v8flBEmHxBCk+f4Z8Hy7Wbsqhm5xEwrKcnzquRS tVCh9dhUa4aWKBPwrgHMoOFtKn19JLBUZJ/UPecblSrtWpvMjF8XpsOoDlULzrr1T7xB ZZD+FD8fA2wZKnOc/sk/LxLPm/el4nUr/freHvosgCkJvvTAUvO1pUSVWfQ6MpiMgxsd 1jIRLVnznHLQaMe3+u7595deg3XB0kb7LI0J70+fVdvs8CP8uUXU1iHlnQecLlCCz5NZ sjnA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=YFOF6bYOAB1MFt9IG/lk8KgdxGJhHNch3ljeZklR3LI=; b=lctfxMExlIAaciUUFVwfTXNtFn13rDe7bjgwEmzhR1As7wDDokEZfjjzUQy3KlwyzG OHNO4ZQfnGlbJ6wnwO3TugMYSA7+e1ljnL5bkjsMnFtHWpc2hn2KaHAkfxeKiII6C/ZP 7RQK0I49UJSER4bTBG32v1wyBE7zIT+A8txXLXk9nERAh4qT8hNUC8o8VCjtqUXmWdoa 5I1oZOJ4Zco/TxuxiozoPwgWVDWwRrwvgf/8M6wncJvciyfD+T4qMFUZftJAne4gDboK U6C5eTu9REYeQSnc1fRjdFi5Da9QFYTEZNbw9epLjFJ74BvtgkpuW5zpbxD2J79kfqR5 RZJg== X-Gm-Message-State: APjAAAX44LTXrdhLVO20Fu9uK0WBicNKWxD397syhdzlu4tb7Kaj5a+c G5hAeayQWr9UPZ7VMggyrSymLcoNhSPteM6ZTPcr8xTpnu+W2ySFDieqW6QG8r5qILCYwmtvkTG tzWD+UQoPCowy2N5frT5tn633qu7husKh0QOC94Yl4kMcRuwl6NCwIMpN/HTgjSN8+KPQpjmlpX 3lQCjUa+le X-Google-Smtp-Source: APXvYqwxAAXqF/WwThTBeaRWPukks3J9zUmwaz6lF6iwkcACRN8AVj4Q2cIqWfpASkqPhaxShjpJNg== X-Received: by 2002:a05:600c:218b:: with SMTP id e11mr6087477wme.56.1580824617805; Tue, 04 Feb 2020 05:56:57 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.57 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:57 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 21/34] gnu: Add package r-rpf Date: Tue, 4 Feb 2020 14:56:13 +0100 Message-Id: <20200204135626.28261-21-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-rpf): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 47acdf95ae..a607abd262 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19817,3 +19817,29 @@ etc.), and a parser for the Stan language. The @code{r-rstan} package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.") (license license:bsd-3))) + +(define-public r-rpf + (package + (name "r-rpf") + (version "0.62") + (source + (origin + (method url-fetch) + (uri (cran-uri "rpf" version)) + (sha256 + (base32 + "1vgqhwi676bi9jjxljnxblw65b5szjwbp87wnsabc11vfjzc9wki")))) + (properties `((upstream-name . "rpf"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mvtnorm" ,r-mvtnorm) + ("r-rcppeigen" ,r-rcppeigen))) + (home-page "https://github.com/jpritikin/rpf") + (synopsis "Response Probability Functions") + (description + "The purpose of this package is to factor out logic and math common to +Item Factor Analysis fitting, diagnostics, and analysis. It is envisioned as +core support code suitable for more specialized IRT packages to build upon. +Complete access to optimized C functions are made available with +@code{R_RegisterCCallable()}.") + (license license:gpl3+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:10 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:10 +0000 Received: from localhost ([127.0.0.1]:42918 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhR-0008Gd-FE for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:10 -0500 Received: from mail-wm1-f52.google.com ([209.85.128.52]:36823) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhM-0008Ca-Ig for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:05 -0500 Received: by mail-wm1-f52.google.com with SMTP id p17so3794062wma.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:04 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=/qg1/DlMZ1JPg8AkDTSLJjqj6NoAo2zH5dFEytrYe2s=; b=NUNwbOyGXeuTUlGyz78ZG8CZcOpdP6cMjhmOZT5gtfqaopkz8YPBm4+jNPfjeDIZlf JYLr568aP5D1EWB/7DC+B/3Pd99tYB1CdbEkyB1Q5jJ8ZfCeNSvp8Im1cZ6gWgL6Nx29 AGsPEPfYkK6iWNkcLZd5rw4rWNEldM/myzN4lhHOn1x4Tsouk9p8Z810kchXszN/J24b 4wVthAmP5lAMcxHNu2OzCFjuYnheHO718ZMHMDlzJ8sPjJ05KviDO0/OnJ9GC5mjMYnx ezW88P/7qvUzj3eNy2uWvIQ+X77UtkAZyxQL15SXq5k4WfqpnU0Oxzime3hhaOSy5FR4 oFxQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=/qg1/DlMZ1JPg8AkDTSLJjqj6NoAo2zH5dFEytrYe2s=; b=dmfxSTGET/hBS+klIQ6UFI0IEx9hwmrgetBtR2SLFGfcf/GkPF7r3l8eqnMoedppLT PNl+sMT4/jg009ODk2W7ofc20cNz5a6JjNXhAh3GD1UjmPWrzvg3L3IWLtMQXPS8SBWp qED7WiUTISRnkP5K7ywqdoEHj7iAkoCah2Z6/gn4IVuU58pxLVZcqznXWNk4co3bW/FO WlzqNC6UsSRbijH+KYRkNVuCKqdy1FRkDuEli50QQvBOGsC6xECOzqW6MDf0usLqFjLf sA+RFbhuu/PMc7qAYYOwAWRipB809/u8QkmHEtDnK7hKDCc63H2m13cDfpZfqCdIhrrg 6qGA== X-Gm-Message-State: APjAAAV8PRb6fTwntfV3ytm2OYSVVAWzFypBc9pKtsVOTo3T9baTwSor /qoEscpO6Nd3EUqHy/AblxzCVqisxizljojvgVvHahxmp+rYFXr2DZlW36slAPK0AnkDrNwQ2BX m0EBZpHP10yCAQ4y8sb5UcK3S8kuZJRCiKegXeovZpf1b9JOoB9HKBN0Xpv6blG9/ihcf5LOfG7 1/gEmNezcJ X-Google-Smtp-Source: APXvYqwJXa0ObZvKFRCGV9ld2bToVmbls9KwbZyWPMcUPLWiwOdeSNQwNmGRJwlEm9Jg3TMRVRL1rA== X-Received: by 2002:a1c:4857:: with SMTP id v84mr5942322wma.8.1580824618579; Tue, 04 Feb 2020 05:56:58 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.57 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:58 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 22/34] gnu: Add package r-openmx Date: Tue, 4 Feb 2020 14:56:14 +0100 Message-Id: <20200204135626.28261-22-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-openmx): New variable. --- gnu/packages/cran.scm | 38 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a607abd262..0223b97a62 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19843,3 +19843,41 @@ core support code suitable for more specialized IRT packages to build upon. Complete access to optimized C functions are made available with @code{R_RegisterCCallable()}.") (license license:gpl3+))) + +(define-public r-openmx + (package + (name "r-openmx") + (version "2.15.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "OpenMx" version)) + (sha256 + (base32 + "1wbzhmyb1lnk39dkcyccmblxvniwsghh0jd94x05pk6yrcq8im5v")))) + (properties `((upstream-name . "OpenMx"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-digest" ,r-digest) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rpf" ,r-rpf) + ("r-stanheaders" ,r-stanheaders))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://openmx.ssri.psu.edu") + (synopsis + "Extended Structural Equation Modelling") + (description + "Create structural equation models that can be manipulated +programmatically. Models may be specified with matrices or paths (LISREL or +RAM) Example models include confirmatory factor, multiple group, mixture +distribution, categorical threshold, modern test theory, differential Fit +functions include full information maximum likelihood, maximum likelihood, and +weighted least squares. equations, state space, and many others. Support and +advanced package binaries available at . The +software is described in Neale, Hunter, Pritikin, Zahery, Brick, Kirkpatrick, +Estabrook, Bates, Maes, & Boker (2016) .") + (license license:asl2.0))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:10 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:11 +0000 Received: from localhost ([127.0.0.1]:42921 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhS-0008Gt-1g for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:10 -0500 Received: from mail-wr1-f53.google.com ([209.85.221.53]:42881) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhN-0008Cj-0i for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:05 -0500 Received: by mail-wr1-f53.google.com with SMTP id k11so23127966wrd.9 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:04 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=0kUVPux1KR1JKbU76H6uLPS6QZKdD+tnJJy2MUei0sE=; b=GfCrTezuX2j091Pu/wb/zds7v7wK7jGdWrClu9YYND3Dj0XjnKidc6yMaEkg/JYqbb 39+nrQqTf7VTxkWvLYlJFeO8A1puDK7IUY3dPanbi0sOMGBJLKXK339LP/8URRjFPtu+ ++5EmTnTpxO1TkPeQrlls5QwiL3a+bhrC2YuEI5Sbr7qewmfqErIIlE/4Xy3xzXAWA7U 5AlSd6ghGkFxV5qO8M/Et3zxkYtcf7SB+N4hC9zpx3rkekXsTxPc51RzCohBn9wLGOAB Wix5gwRJ/d+I2wGA+ls4o6rXfD0pUhg1lR0NVxabMooHytUn+1iJlI54827GVM1iInli m5ww== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=0kUVPux1KR1JKbU76H6uLPS6QZKdD+tnJJy2MUei0sE=; b=YplaIxFdLEieLXl25IjnYjFD2MJd8BIjyKG51ZRalpzru1SmIoKve70i/Ip/twgK4Y raPWDf2cQOCdlFPsMyuoU71mZJF/uRGPSnnGVU/uVVDW0H4Hwl4aFR6LGKOsKdvT7IiY r1tld7i/UJJXZaNc/yJiemH+KaBGhfFAYDNxlSHeQYjQ8lbPzbv7Z9qkcnp7UOgoSpOH 40PzSfskD6TunQYokrnfTTUETCJcriFGfwGIoIzOyOS5HjooUwzRNrpaNGelZbE7mIMX PNEMyvx01PwwfixAAKf7PKu82SMlWAX0efpgRlAbg4eRHwOaf7q+2lbsmAJfpJiiTGca y4Yg== X-Gm-Message-State: APjAAAUppx01xIPuOr7jLMGujmxhEkAGXeAFIvTV6ime6q1rFlJ99n9D p5fJynYYGnWrJX8+JBb3/BjaypOaemliWq+U1m2T5jizWF7OIgRokYWzlva4asqXhcdr72vaObj SNFEJuO2FblBPBYU3/CQuNby0rVoK9i+NDIGA/jVFU6cCt4XiaUiGTCQEVQo10YRVPNPLP7V2j9 IndfzC6Tth X-Google-Smtp-Source: APXvYqzURjCfviRFAkdOUf6Vo0jyYvlinrSmNqlUegYkZb0GvCfSmHq0654vs9QQwAetkUXIOGdzgg== X-Received: by 2002:a5d:474d:: with SMTP id o13mr21736469wrs.309.1580824619137; Tue, 04 Feb 2020 05:56:59 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.58 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:58 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 23/34] gnu: Add package r-kutils Date: Tue, 4 Feb 2020 14:56:15 +0100 Message-Id: <20200204135626.28261-23-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-kutils): New variable. --- gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0223b97a62..ebfa5d9529 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19881,3 +19881,38 @@ advanced package binaries available at . The software is described in Neale, Hunter, Pritikin, Zahery, Brick, Kirkpatrick, Estabrook, Bates, Maes, & Boker (2016) .") (license license:asl2.0))) + +(define-public r-kutils + (package + (name "r-kutils") + (version "1.69") + (source + (origin + (method url-fetch) + (uri (cran-uri "kutils" version)) + (sha256 + (base32 + "12pg26a85h0jxlfcyai68dbh4bq1gnq8v1ngi8k9qvafbrpc6gx8")))) + (properties `((upstream-name . "kutils"))) + (build-system r-build-system) + (propagated-inputs + `(("r-foreign" ,r-foreign) + ("r-lavaan" ,r-lavaan) + ("r-openxlsx" ,r-openxlsx) + ("r-plyr" ,r-plyr) + ("r-runit" ,r-runit) + ("r-xtable" ,r-xtable))) + (home-page + "https://cran.r-project.org/package=kutils") + (synopsis "Project Management Tools") + (description + "Tools for data importation, recoding, and inspection that are used at +the University of Kansas Center for Research Methods and Data Analysis. There +are functions to create new project folders, R code templates, create uniquely +named output directories, and to quickly obtain a visual summary for each +variable in a data frame. The main feature here is the systematic +implementation of the \"variable key\" framework for data importation and +recoding. We are eager to have community feedback about the variable key and +the vignette about it. In version 1.67, the function semTable() is deprecated. +We have proposed a new package of that name.") + (license license:gpl2))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:11 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:11 +0000 Received: from localhost ([127.0.0.1]:42924 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhS-0008HB-Qa for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:11 -0500 Received: from mail-wr1-f68.google.com ([209.85.221.68]:33003) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhN-0008Cu-Pg for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:06 -0500 Received: by mail-wr1-f68.google.com with SMTP id u6so9887165wrt.0 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:05 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=a/5sI5MJ0eG2NE8g0V42cmU+y3mVu38UUF3Kn8tVeGg=; b=da8Ni/Ofhn2RIcmFzaLaOCZkaM4HtdA+HezhEsiSseHaqRAgoMIX7Pb2eD26E+i7Zu Et1kkDw8tDhrnj/p1NcKhjqaxYrRvb+UUtVHtbvP5CbkhsMTDs40/mAUBLjAneVkTNug tZ33ELx1oVrab3nejHHnVED/CiUzKL42MCiJMkoPy1FGym3uwu4hHUYakKBPB4tKWztD akloghtVjcJXB/ERuaGeCIJB56ZC4PpEq8S6Xw5OG4Mjs1PpxYEq0uF7RhTqeUryJQGE lBYEkpvlKUmo9TH1GjPlCSHQfg84BKQ2W7e4h8lLNun2mqdh/lqOXnqrAcygx25qOmv9 79qw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=a/5sI5MJ0eG2NE8g0V42cmU+y3mVu38UUF3Kn8tVeGg=; b=JLmLlYnAq4w4AQz7HV2gd+is5dbvQZ/R1ObmWWsr1ncI6wtdmlZNwOyAUScVt3eNGb CpcpXt+op/vXbUBDbYIqSf0pI4YaoOndh/uAtd0fK/9ZlZr4v2yyNXZColXHZz+ZX6Y0 IZEo6bc5HVGcVcjVMldKuCOTkZGNgt5ia+0mWo68mzDyxV0a6RTXNESgAtfe1Dqe6ws4 kaxxU7clSq9b0OOeQ4gdPuJZqLMcwaMp9PmPoAdKh/eF1gtoEOGOIU2uTbVLx/jPBfmi liN465Q6ajnYMamE8Xrqn7pkaUZi1vZuAmhWLP1HxIZ3cucQOcvYYzX0Nxo93d+tMFmj lEhQ== X-Gm-Message-State: APjAAAWf3NrBLkrmtOo3EW69IjnUgScSpO2V1F62hHyFVWDC06g/FBmS bd22vP3YoOP8tHH+3b7pmEACydiGro/u8AeWtTYKpew5s1wu5StR1gryVONkty1MADBt9Ln6jbY GK2wo43Zt+/wU8il+03Ty4n8/SeKZapK+ql/1q2SHvKW2pdPviuch6Xl7yST4FmFrCGPelQL3vI hYNkMthxF2 X-Google-Smtp-Source: APXvYqxUU4JriJySVSZ6jgoMCHtl+4Lt3TXFck3aV6iX+eB1foSQ8YJB4iIuw8JhlesGXVulwZPj+A== X-Received: by 2002:a05:6000:118e:: with SMTP id g14mr23799708wrx.39.1580824619871; Tue, 04 Feb 2020 05:56:59 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.59 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:59 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 24/34] gnu: Add package r-rockchalk Date: Tue, 4 Feb 2020 14:56:16 +0100 Message-Id: <20200204135626.28261-24-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-rockchalk): New variable. --- gnu/packages/cran.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ebfa5d9529..2df2f90d37 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19916,3 +19916,37 @@ recoding. We are eager to have community feedback about the variable key and the vignette about it. In version 1.67, the function semTable() is deprecated. We have proposed a new package of that name.") (license license:gpl2))) + +(define-public r-rockchalk + (package + (name "r-rockchalk") + (version "1.8.144") + (source + (origin + (method url-fetch) + (uri (cran-uri "rockchalk" version)) + (sha256 + (base32 + "07dp1n155b9gfvk8l30h6bhjbhbylsjxfzns08mryn4mxj3nqpnb")))) + (properties `((upstream-name . "rockchalk"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cardata" ,r-cardata) + ("r-kutils" ,r-kutils) + ("r-lme4" ,r-lme4) + ("r-mass" ,r-mass))) + (home-page + "https://cran.r-project.org/package=rockchalk") + (synopsis + "Regression Estimation and Presentation") + (description + "This package provides a collection of functions for interpretation and +presentation of regression analysis. These functions are used to produce the +statistics lectures in . Includes regression +diagnostics, regression tables, and plots of interactions and \"moderator\" +variables. The emphasis is on \"mean-centered\" and \"residual-centered\" +predictors. The vignette @code{rockchalk} offers a fairly comprehensive +overview. The vignette @code{Rstyle} has advice about coding in R. The +package title @code{rockchalk} refers to our school motto, \"Rock Chalk +Jayhawk, Go K.U.\".") + (license license:gpl3+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:14 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:14 +0000 Received: from localhost ([127.0.0.1]:42936 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhV-0008IF-Ia for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:14 -0500 Received: from mail-wr1-f54.google.com ([209.85.221.54]:40901) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhO-0008DB-Oo for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:07 -0500 Received: by mail-wr1-f54.google.com with SMTP id t3so3217512wru.7 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:06 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=MGQ5izHjDIp8h3gD6SIBJSESyTowWykld+ePrcl+7xI=; b=CS402Lxn1nbJ21nlZbyO48m14JJ+e+at3ikYaDlXf4sj2OoNOJ71wdJiUyRL0URXbt 8cOk2cAReY3iagMZrtdH12pIpkOpT1t/AQ3L6ZhyfyrKzsgjRPWvFTWRdLZMn9lXOPpK 6RpgsPFjTXtxVDYTbvb/v9Sx+HOxGXM7kbKby6YGqhFm393iTL6CQ5O0IMWg+tWmsutJ xdHhRikFyaYvImlF93Zsw8xIarHzNnYQUPpwiOTdy7yCY877zt3UGDCeHOb7KdmlT/bs awy6gcJDPO/lCR0ZR4KEyurow0JZttsvQ1N7yNe4I8iwf8KsYcex8g4mZHzQLAJUiUle rwYA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=MGQ5izHjDIp8h3gD6SIBJSESyTowWykld+ePrcl+7xI=; b=Gx5TOiI8WWvP21AbRnyiFlXrytx4LCNcU39pLedXK1DWP6FawR7TrCM1+BcJEUJXQv v2F6saDOxotf2BzZ7IxCG+os33LQiIw414/pSrAwxKnFTzGPPTH2UWcDmXkdNOlCATSQ 96nx1t+GY6dX94utm+F0CbsZq85h1CFNdBCnqnfZLUo97BNY7M5SXnSjj2p5H0iOTYKa hVbD1JigrT3jQozrBV5JexrKG5HsmKzAnQAlL+dTVXayE5njPwazE452p6CsNwvy0dAu biHeDLmIqu2gfWsSnijVHj6wh/LZg1YxVGYYNxc22rSO3JD+wceoArpETQk/BVE+GHgD g94g== X-Gm-Message-State: APjAAAVCa9mnGzpSVbPI9NZ0ZAFmFKfSFm0gBAK6v2VnZxYbb43cO27n dQ4bV2c3yoYhZRsc/sfSfB23TUhqso0UTLLtNVAxpcBq4iwvp+JrEEBLQWcKQTcCB1PdJEoFOx4 uhEC1yflW+cYj2uhJ7qg0r/CPAdgQNKmWqStgvPJ61v6lE80R3TsP2EP2NeIuAjoYU4wtz8E0JO PstUadmPSR X-Google-Smtp-Source: APXvYqysSm1E3KjqDIpxPTTbN3FVHaVvYAMtpZj9useUrI+AfqO8cLj6JOUBonvujqKp+oT+vx36Cg== X-Received: by 2002:a5d:6408:: with SMTP id z8mr22271932wru.122.1580824620968; Tue, 04 Feb 2020 05:57:00 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.59 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:00 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 25/34] gnu: Add package r-lisreltor Date: Tue, 4 Feb 2020 14:56:17 +0100 Message-Id: <20200204135626.28261-25-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-lisreltor): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2df2f90d37..1d6a26c6fa 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19950,3 +19950,25 @@ overview. The vignette @code{Rstyle} has advice about coding in R. The package title @code{rockchalk} refers to our school motto, \"Rock Chalk Jayhawk, Go K.U.\".") (license license:gpl3+))) + +(define-public r-lisreltor + (package + (name "r-lisreltor") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "lisrelToR" version)) + (sha256 + (base32 + "0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5")))) + (properties `((upstream-name . "lisrelToR"))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/package=lisrelToR") + (synopsis "Import output from LISREL into R") + (description + "This is an unofficial package aimed at automating the import of LISREL +output in R. This package or its maintainer is not in any way affiliated with +the creators of LISREL and SSI, Inc.") + (license license:gpl2))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:14 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:14 +0000 Received: from localhost ([127.0.0.1]:42938 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhW-0008IT-4S for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:14 -0500 Received: from mail-wr1-f46.google.com ([209.85.221.46]:36909) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhP-0008DT-MI for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:08 -0500 Received: by mail-wr1-f46.google.com with SMTP id w15so23209567wru.4 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:07 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=HuLhbfWVLNIujzymOBEmSqsNw2NZFyq7r639RZZJq3g=; b=YrOE8ax1PGAcUgUnefFr6b9inOFVrJC9bgSQN9ZJwca/ednwoAGoiSRna2TRdW7ebp NqCVipoDamD5PHgUbUBfLUv9LAFGCNBQ61cgDQNO1EXc2EjECj27G53PYTsMqwdg1qKQ Bomb1UICiTYQfG+wBQNUTxGUlK48V98y9j2uJiTdW+vO6ElA1KftlXFqfjDKj9pJqwkn ow+OF2RQbAr7bY5pghPOd7x84UWQzNw6hihg4MAfpCE9SJEGugd+ipGuuheBwJMHcxe6 LlRcvP+g4DnGp9YSTE7jsW8td2JyhzHVe97aQeng2u2C51gfm+VeKXgNIIhX14VPsFhf BoEg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=HuLhbfWVLNIujzymOBEmSqsNw2NZFyq7r639RZZJq3g=; b=pEgmUps/DDLN+brz2vavEsl1JLd7zNr4YG7tASMdF/fRt4pc+cYiB36akFwC9oQhtU So+5Nt38FE9CKk6C2JePVpnPi/P8AIqFEfDI5oNalz1Lfjvp17EhJ+iD7cW970A4VUJ3 66KstehVraKzBvX4ryW4ioB3w7kNQMNQ5ah0U9IwXNejxC+o9dXbhiUf6NgnKi2uIPsC OkuIhv+Hrn+bS1Bqjtw8LQu7p1TWQo7de2n7e3GOomFWLuFlnoLNlhCgXupFTswNTG2f lEd2YjWQ5CGbPsiorCchpat7K4Sj3XrItFf1w8JcFE1Is0udPnyAMuiLtAQIXfMuLqCj 1w7g== X-Gm-Message-State: APjAAAXk4oy8FSJvRV1j+esN1gznFm9ZbjwoPlsYJ2Bx9yryOjmRNx9c kAxQONMDje+YD8zO6kym3IcGBK0JiuWtkZQPdAdN2wJexAC4LoZjjrLVVowr9sl9U89NjDhcy7p kzAHocFnC/TXA9xtC9DBIFIEaV0RmCbb2ZPYCoCfRqSprzBfRn2QH5OnUsAasIYtFijmLDlNOnW YtaFKKsZ0A X-Google-Smtp-Source: APXvYqymRGYumohVffTCWWeQ+zhN+ZxywpmT+sRKOeZSJ7mFn42uKZOQeD93FdhaetfEqCgYTolkyw== X-Received: by 2002:a5d:6b03:: with SMTP id v3mr21335540wrw.289.1580824621755; Tue, 04 Feb 2020 05:57:01 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.57.00 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:01 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 26/34] gnu: Add package r-bdgraph Date: Tue, 4 Feb 2020 14:56:18 +0100 Message-Id: <20200204135626.28261-26-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-bdgraph): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1d6a26c6fa..7b9545ca30 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19972,3 +19972,29 @@ Jayhawk, Go K.U.\".") output in R. This package or its maintainer is not in any way affiliated with the creators of LISREL and SSI, Inc.") (license license:gpl2))) + +(define-public r-bdgraph + (package + (name "r-bdgraph") + (version "2.62") + (source + (origin + (method url-fetch) + (uri (cran-uri "BDgraph" version)) + (sha256 + (base32 + "1b1vfar940swvn3pcil848qsp8ji50fjjll8jjzp6y2adx0f8pby")))) + (properties `((upstream-name . "BDgraph"))) + (build-system r-build-system) + (propagated-inputs `(("r-igraph" ,r-igraph))) + (home-page + "https://www.uva.nl/profile/a.mohammadi") + (synopsis + "Bayesian Structure Learning in Graphical Models using Birth-Death MCMC") + (description + "Statistical tools for Bayesian structure learning in undirected +graphical models for continuous, discrete, and mixed data. The package is +implemented the recent improvements in the Bayesian graphical models +literature, including Mohammadi and Wit (2015) , +Mohammadi and Wit (2019) .") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:15 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:15 +0000 Received: from localhost ([127.0.0.1]:42942 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhW-0008Ig-LA for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:15 -0500 Received: from mail-wr1-f49.google.com ([209.85.221.49]:38854) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhR-0008E7-3f for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:09 -0500 Received: by mail-wr1-f49.google.com with SMTP id y17so23178414wrh.5 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:08 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=yJOalrsVMm6MGp0uO+u62ONawRFOeMfgGeiea5qKDdM=; b=QqNt+WhE1Y4zb5wfrJRemfjKJ2CNd640bBH3n+jZitTXvCbQc71NhhzUQ+ilTE+O1c h85sSJFAIgr8FeGUdt0qIYBICBZ0rtytizsZXX2gdMdQFAf27U4IWyw8vsxRfeu1USKs pA0FyX8Y/BU6vC+o+gPpv+XB+8wmqTD/rB6Leb73SGKTLEpsSoRw/BoiscsVGe6a3k5L ftqeOUmo/rZD+qQo53/AXBdRF2KEvSF0QBK4GCgmW0wFnQcKaqJ+HPydu+riuPldeqPP qsl62wRY9vu0Dv6KCwHe4Qy8bVwkU+yqnBtjyTjx3Ec38kO9VSn63v91c75MmteENjlA 6NGg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=yJOalrsVMm6MGp0uO+u62ONawRFOeMfgGeiea5qKDdM=; b=LQg/TjKN3IpsG4tjxk23zs7vdvJywZPfnYhcVXvjxMdaeCudQ1ctbHPr/vRoAYRUmv 4U2k8qPvynKF1RWe54ZtbOElaotIQOLv50HL8dcJswWatJ3eThjHKOxWmPiBaRZU4S6n F/H0/JeBW4oxmWF8Hi8t5PSK57+E2aKEWohR3dCscb8ZV1lr3KxYU1dlPTaXEUhXDcpk Mx3bCynFotdzyv/r8gPB7dFRUYFJa6N5uUzDne5btpAjgZj6ztc5vAO5qW0gsU8/qEy9 9e9Bm/DCikbB6y7VVo1PyvHi+DmPUCOKRnlnmZUHGTLpZdn03/4fvBepIqY0V+UJpCPi OQ2w== X-Gm-Message-State: APjAAAVlKrmKCP0JlntG5MbtHYtziLsFPujcc/0d3HZJt/ZCkXijkE1d 1DE0mBK1giL97OQ3TXD/SuOwbhNvMn+xPnPDX5OXLwnwE+XsSfuk/FTxA9uYoGzyKxY7SZ6uGjj W2r9W+QveSGYuuN9OYjRRTudC0jC/Jvh9gB7wentb0ASThJDflNt4urTkgvbDqilGJQjjJ7OIcu F2H0urabrA X-Google-Smtp-Source: APXvYqwkV/NJhpLXVGyqGlbBB9lXxGjRMI/H+L26IJ8kwTyLmaVIqjv6YOdtUMIYJcDqxjzt/eA6eA== X-Received: by 2002:adf:a51d:: with SMTP id i29mr21622924wrb.119.1580824623260; Tue, 04 Feb 2020 05:57:03 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.57.01 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:01 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 27/34] gnu: Add package r-ggm Date: Tue, 4 Feb 2020 14:56:19 +0100 Message-Id: <20200204135626.28261-27-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-ggm): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7b9545ca30..d006c3d663 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19998,3 +19998,26 @@ implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) , Mohammadi and Wit (2019) .") (license license:gpl2+))) + +(define-public r-ggm + (package + (name "r-ggm") + (version "2.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggm" version)) + (sha256 + (base32 + "1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3")))) + (properties `((upstream-name . "ggm"))) + (build-system r-build-system) + (propagated-inputs `(("r-igraph" ,r-igraph))) + (home-page + "https://cran.r-project.org/package=ggm") + (synopsis + "Functions for graphical Markov models") + (description + "This package provides functions and datasets for maximum likelihood +fitting of some classes of graphical Markov models.") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:15 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:15 +0000 Received: from localhost ([127.0.0.1]:42944 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhX-0008Iw-9i for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:15 -0500 Received: from mail-wr1-f53.google.com ([209.85.221.53]:40910) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhR-0008ET-K4 for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:10 -0500 Received: by mail-wr1-f53.google.com with SMTP id t3so3217768wru.7 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:09 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=Q+vLPNJwBejQnxH6UxkW3KCRBT00OkeKmKwaDDnVfPQ=; b=nsLOLSXLOxWG9FEyInF/ywTrPis6+n9X+H93umpZc68YyjF5ia7bboBEfuwE8MezlN B/tjutQbaNdWsM4MToyL0UxV49mL9X0eGRS5VAyv72J+e/zFl3GebesBnqwOijOFE/Xc w5o1vVrOTHsKIxmAZr+2C2TCk3ogtM9dUgJ55E0BBrqK3tKe+9DB3ZbY//QHFBD8Zz0y ADoLpvOXqV0j/vfItMqMmISfYMn1QHGuusVbL6txR1/HGutlX+Z42bRdxQlbJdFOBhVh 6ZkxJENUFp+k9Vxyrhzcd7cT0yp+82wfjEQ0A7y2pli7cjA6d9idspXK8TtDxZkRI3Rp LntA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=Q+vLPNJwBejQnxH6UxkW3KCRBT00OkeKmKwaDDnVfPQ=; b=IOYFEAdVK9/RjUJVL7q8vs7oHElXx1N2ojhVvSNTSGAvJIXML+FGEvRijghefUytVa XCk9B5UkT0uVeh5UUnby2XKXLB91wiJ3IfuNN9ch7JEx1cZCAPcX2Y/P9QS10SXMv0c8 me52rknEFVnE2457EHCn6YJF3RHGk/TXCLUGfiOsxLM5hkOO11/zZzmcj4WEOPjyCI7W mLQz8zXIpQtKGvaNCZig7UUUHSamTMaLINkvU+RoyfXMJGZz7lqr7eh0ThYZ/aHTAlZJ J/FMt7UlPK90CqadHT71pcsUsI2iNZzuizDe0yNH2knsurATIIryWmzvcLdNbVyl4eU3 WnLw== X-Gm-Message-State: APjAAAVfayn5lGP1AmqO8FelbH4yytMmJHzsDVmt7P50pko3M6fidJ62 UdjKSrTJ/zXOhVE1ckfvlek8OIsbmPSURCJrdFGZoh6p3FNZ7jIX6YsIIuT+gHWxEmGf2ZyxeBl r5LhkBlLwjKoEzgRHpOwZ+ECSKYHCCV3fUuePpXHp3cPlBL7ycJSJHcXRcK2V9g+mEq04JWbgWX SjEIYrv88v X-Google-Smtp-Source: APXvYqw9zwKclRlbH+Fm0iIsjRiOVUE9pL+xYD8z0G76u1HVHo7pUT0+Hhn+CkXVxnGKYjHTwpT6rg== X-Received: by 2002:adf:ffc5:: with SMTP id x5mr23012681wrs.92.1580824623845; Tue, 04 Feb 2020 05:57:03 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.57.03 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:03 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 28/34] gnu: Add package r-d3network Date: Tue, 4 Feb 2020 14:56:20 +0100 Message-Id: <20200204135626.28261-28-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-d3network): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d006c3d663..c56d7315b8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20021,3 +20021,29 @@ Mohammadi and Wit (2019) .") "This package provides functions and datasets for maximum likelihood fitting of some classes of graphical Markov models.") (license license:gpl2+))) + +(define-public r-d3network + (package + (name "r-d3network") + (version "0.5.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "d3Network" version)) + (sha256 + (base32 + "1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw")))) + (properties `((upstream-name . "d3Network"))) + (build-system r-build-system) + (propagated-inputs + `(("r-plyr" ,r-plyr) + ("r-rjson" ,r-rjson) + ("r-whisker" ,r-whisker))) + (home-page + "http://christophergandrud.github.io/d3Network/") + (synopsis + "Create D3 JavaScript network, tree, dendrogram, and Sankey graphs") + (description + "This packages is intended to make it easy to create D3 JavaScript +network, tree, dendrogram, and Sankey graphs from R using data frames.") + (license license:gpl3+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:16 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:16 +0000 Received: from localhost ([127.0.0.1]:42947 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhX-0008J7-MS for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:16 -0500 Received: from mail-wr1-f41.google.com ([209.85.221.41]:44807) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhS-0008Ei-8P for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:10 -0500 Received: by mail-wr1-f41.google.com with SMTP id m16so23139292wrx.11 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:10 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=Tvn6hZd+fsjp2IHm+JYyk+vHbNxCmIicmnVO6rkT7BQ=; b=W2lrmqPQLbdNXONYytU03X8xd/34ZHDqRLfTZXxmGSPVwM0aDoDadOgieJYbFuRO5s zJJjQOhJvYenUFp5ND+Pl+VJOwPrWErrDi2zH/MpsZvOgkx3mo6/dI3P8leW6+MR2lAf 66MMXK3hc0XwL3OOAy3s2Z7pSH/PjyTWTTzg/wPs3C0D8sVYfFT5f0Ti3iYB4TaWFIer Sh+v0YG3gYtm9Qdgr4CeUO9sDWva/zO1aKmb+KyyR4t/1vmnMYuzTQmNwadmDBKpc2X3 H0SpyLygRZIJUDx9E/BFlwHa6AQPfxWV2ZX7/Cm+4M1/icGlMIGlKG+jIkg0eZfdEPa3 aJ4Q== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=Tvn6hZd+fsjp2IHm+JYyk+vHbNxCmIicmnVO6rkT7BQ=; b=io0oIYIB+wOLPpi+IpGzoa+YS28WFq5V5rmO/fTpFJe523RT/8IGgWuVE1yPR3gIsw Vbbaxc0pf3Ya0oqYw3VB0A+jM4eQFo4u+mqC/2Cw7kmjlwqwQsEUcxi0kysojymhTXCV ZrAr2BdwTzO/NjfVSZYBN4xvG+v9EJq3njy8ZbRaFGrZfMLrFzC29oTtQ1uF0OGVduUO 7fq3RZy6ecMX8Kaa29mYe98VsAm+Qpp3NctotUcCjnumu7Sn5YAmF55Plouck11PI+ck QUFSVGoV5tpN52O2rKo1rFwR/AS873XHNoXFFnsprudmybXVVkltagO9kIS4xU8FMxYi uoYA== X-Gm-Message-State: APjAAAU6gTT8nIy0RXcqEmG9o3abO5Neb557FvIVVGMdajsFiyxQfiVz Hg3hNXSAG7xWHHWO3Roqbu06ZCcXk780mh+WT50cHm/PjWTQibI1I/ztv9yo7I9Bdhe5P8ZIZs4 aFcklchEyzFLIDr6c2WKn4LT9+bmhZU/DOhFp4R4a8RN3Psw0CZ3ri+CoFV6k9ikknBCPNretJ+ q8yvWeToSU X-Google-Smtp-Source: APXvYqwpdfVpbIGk9QqIA3c3sLVeX+Aw79hTZmgxvk6f/gQKKQigxhXlO4mKJYs6AUFKl1D0ZRQUxg== X-Received: by 2002:adf:ff8c:: with SMTP id j12mr22021159wrr.354.1580824624493; Tue, 04 Feb 2020 05:57:04 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.57.03 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:04 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 29/34] gnu: Add package r-qgraph Date: Tue, 4 Feb 2020 14:56:21 +0100 Message-Id: <20200204135626.28261-29-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-qgraph): New variable. --- gnu/packages/cran.scm | 49 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 49 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c56d7315b8..3f24c9964a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20047,3 +20047,52 @@ fitting of some classes of graphical Markov models.") "This packages is intended to make it easy to create D3 JavaScript network, tree, dendrogram, and Sankey graphs from R using data frames.") (license license:gpl3+))) + +(define-public r-qgraph + (package + (name "r-qgraph") + (version "1.6.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "qgraph" version)) + (sha256 + (base32 + "1glg814h7fwl1jfm6dw1d9i80bilmj5jcjjrfln15byrdh4mm1j3")))) + (properties `((upstream-name . "qgraph"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-bdgraph" ,r-bdgraph) + ("r-colorspace" ,r-colorspace) + ("r-corpcor" ,r-corpcor) + ("r-d3network" ,r-d3network) + ("r-dplyr" ,r-dplyr) + ("r-fdrtool" ,r-fdrtool) + ("r-ggm" ,r-ggm) + ("r-ggplot2" ,r-ggplot2) + ("r-ggraph" ,r-ggraph) + ("r-glasso" ,r-glasso) + ("r-gtools" ,r-gtools) + ("r-hmisc" ,r-hmisc) + ("r-huge" ,r-huge) + ("r-igraph" ,r-igraph) + ("r-jpeg" ,r-jpeg) + ("r-lavaan" ,r-lavaan) + ("r-matrix" ,r-matrix) + ("r-pbapply" ,r-pbapply) + ("r-plyr" ,r-plyr) + ("r-png" ,r-png) + ("r-psych" ,r-psych) + ("r-rcpp" ,r-rcpp) + ("r-reshape2" ,r-reshape2) + ("r-tidygraph" ,r-tidygraph))) + (home-page "http://sachaepskamp.com/qgraph/") + (synopsis + "Graph Plotting Methods, Psychometric Data Visualization and Graphical +Model Estimation") + (description + "Weighted network visualization and analysis, as well as Gaussian +graphical model computation. See Epskamp et al. (2012) +.") + (license license:gpl2))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:16 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:16 +0000 Received: from localhost ([127.0.0.1]:42949 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhY-0008JG-24 for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:16 -0500 Received: from mail-wr1-f54.google.com ([209.85.221.54]:34568) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhS-0008F4-Uj for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:11 -0500 Received: by mail-wr1-f54.google.com with SMTP id t2so23195670wrr.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:10 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=vPoHGLNpPMAsxOro2g2XtHk/TZstBvfduGkYcGQHWik=; b=ZkaUOGvJr2S6suVt+WmqmyEO7pWyd/5S6SXYdZFA6U9fdl6F1eDrTBWkusJ/EJ3NZZ xOJJcjykSts2T1vrNVhNO3kmjkemWfTeqbnE9tPjfWSheDSJzzZW5binDgCjSKZCpMSe rZAUfq+lNK+QWhEXN1zyvEqrJRlrJv8L6zw+xzv9UzMMy/KopgTX/A8+0nVrlyzGek7Y KRQFi37/bvhTRZgVkUF0JfNB/6B7JcBFOrPcaaQMJNj77IUvmfJjvdv4KYj3c8bxfL3B 3r4oVxIRjSIef5ZK3fTQgjHb51Mx+ADVJxqAh42n5MCmxDHxQZ8WZxlTs4Bch/f4PKpt LXVw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=vPoHGLNpPMAsxOro2g2XtHk/TZstBvfduGkYcGQHWik=; b=COpsdKNsTuBXGftxRiO8i9hX7qzFA4W+47mip/MBxIwvsHg54usnOueXnu94NqXI1t x6Q4fv5MxlWgw0HMysw2/cwGqookXVo9qcdaQ4iU4O186aB91sKetLjdsvjNvosfi3KJ clTAQudJzicxegox8NqCkbr1Ijh6w/VLB+3Fc2ZnlnEUjxWqd6+kBmQSsWFbh7jXfIPK 5wz/XfuPfT2yJXu3PZb65N7V1n0Ru8AiOWyqzoHulcJvGDZNznZznY50cQE1MfDEd+wg PW373O6EvEbhZrQi4ZCk5mYxVyXiN5TW1w0P26BhGgvJ1SwtzP7ME9txSk1inZP0wKMc nHMw== X-Gm-Message-State: APjAAAVnGlG06oWhCtlSejUXWc9Z7ntNLq6McESGaHrQZy5z/o0ojR5f +RAe1fyalVbHK1EUyBlTPhHB5ytvdNtuqHoULtF9oTPRgzJs8ihVziifawGsFx14LHCrmQUw1TD WTESSTVg6GL4QgjBXSMIYp0sgGgh6hqdegwzy/UdcFlKd4Klrbx+Te9dug5xn5QvvLMupzo8Yi6 ud+DdqnzlO X-Google-Smtp-Source: APXvYqzRNSk+MqPQOVtL65nQVuPzz/r/LH8evOsuAb+MZXHLymmSyW1C8JcHzYLoReyQdLyYW9kOMw== X-Received: by 2002:adf:cd92:: with SMTP id q18mr21805885wrj.261.1580824625125; Tue, 04 Feb 2020 05:57:05 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.57.04 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:04 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 30/34] gnu: Add package r-semplot Date: Tue, 4 Feb 2020 14:56:22 +0100 Message-Id: <20200204135626.28261-30-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-semplot): New variable. --- gnu/packages/cran.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3f24c9964a..fe2ef959dd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20096,3 +20096,37 @@ Model Estimation") graphical model computation. See Epskamp et al. (2012) .") (license license:gpl2))) + +(define-public r-semplot + (package + (name "r-semplot") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "semPlot" version)) + (sha256 + (base32 + "0l1v9yi1pv59iwfknw4dh9qskk5y8r347jq1vq13gnfd3bmd71xr")))) + (properties `((upstream-name . "semPlot"))) + (build-system r-build-system) + (propagated-inputs + `(("r-colorspace" ,r-colorspace) + ("r-corpcor" ,r-corpcor) + ("r-igraph" ,r-igraph) + ("r-lavaan" ,r-lavaan) + ("r-lisreltor" ,r-lisreltor) + ("r-openmx" ,r-openmx) + ("r-plyr" ,r-plyr) + ("r-qgraph" ,r-qgraph) + ("r-regsem" ,r-regsem) + ("r-rockchalk" ,r-rockchalk) + ("r-sem" ,r-sem) + ("r-xml" ,r-xml))) + (home-page + "https://github.com/SachaEpskamp/semPlot") + (synopsis + "Path Diagrams and Visual Analysis of Various SEM Packages' Output") + (description + "Path diagrams and visual analysis of various SEM packages' output.") + (license license:gpl2))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:16 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:17 +0000 Received: from localhost ([127.0.0.1]:42952 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhY-0008JT-Dg for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:16 -0500 Received: from mail-wr1-f48.google.com ([209.85.221.48]:45118) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhU-0008FW-5U for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:12 -0500 Received: by mail-wr1-f48.google.com with SMTP id a6so23132794wrx.12 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:12 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=nYd74dsTy/pIhYDFsdh3fHyDFyKEN5DTmZrPdcApMJQ=; b=jG+dEjv1HH8wuNaVdvvxjCzDaaJcy5xoRKBBflV/CDdZbTMmGqhYXlX6OAmKpYeEIm XUCZ7zSUdLzDX1CMl3SuRmGtHN2MJEmB6Q7VnvEwU6FIN1vrDK5nukHgtCYXGgmQos0X vCacms9fXZoN9Dq7s74kiezijiuoiAo9MuSPRyrTS5MlV423PoYMA8yXDG6I/HRNi/eN AK1IG0V/dIb2/MnSjdhQtx3+3gnDpi/YlAAMZ2YPQyEPjTtfB9KKbXwSDgpYP5PKk4VU VbquDSVI2eB1Y3kbAC0XFQG1IhePZ+JAIstNkQ29HV9yoZxO5b0zAwj/lHdK5yy5CBrJ lvbQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=nYd74dsTy/pIhYDFsdh3fHyDFyKEN5DTmZrPdcApMJQ=; b=WcZZBNlFvG1jm7OE5EQJApuSf+ZHQzT/mVo86mcch9/DBL/CO9y5O+MwEsO+mXuwZ8 BNcM65XooRFHcdL+BrBEzM3/lrR3e0m1zcxO4qURyWJYUgLv0As7ub8gwxLpVFnK1hLF mqM6EYK4K9KZYNiCA0TwMqter5akQqZjcfpx6CZGxG7ob60QfeCCsEjeDQI+0/ueQRPg UNKOUYNZ3ud4kzf+q5FMDca14HrvFRPP2l+G9eZdLXeXwO4pIDkQeIG4s5aTDRg5YbOg dlxZyPybNcVFksRdR2JFc9dQcVYJ+ZvhHhdJv1J5qSYFDteCf+Ek9aJGpViUYdXkNV99 PBIQ== X-Gm-Message-State: APjAAAV9kZ/r3X75nKxbI+Bzf+DP68/f3WOW6PmvhFgZve7RVJcR64e8 EqZSBmmZlQ/rFve/gLqe64jbmSHIAvtMPj8iAw8SowZ5IHrCMzr3Ro5EHtxka0xcWRbEbRcEcHN ta/mLG70ZoYVJnihyudLh1Xl17xjvddQ0uwm9w2IWxawfvmQ0ccLKDMP2gDFspLDT+RWM2CJHEg rrYoSknDP4 X-Google-Smtp-Source: APXvYqyDgsW4GDh+RFNFPeKt3Q56mF4cQ0KL58RZixrFML3szdknh4sqEU6eUWMoGB47xA4rtKY47Q== X-Received: by 2002:adf:f1cb:: with SMTP id z11mr21505582wro.375.1580824626272; Tue, 04 Feb 2020 05:57:06 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.57.05 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:05 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 31/34] gnu: Add package r-cdm Date: Tue, 4 Feb 2020 14:56:23 +0100 Message-Id: <20200204135626.28261-31-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-cdm): New variable. --- gnu/packages/cran.scm | 38 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fe2ef959dd..396e9521a6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20130,3 +20130,41 @@ graphical model computation. See Epskamp et al. (2012) (description "Path diagrams and visual analysis of various SEM packages' output.") (license license:gpl2))) + +(define-public r-cdm + (package + (name "r-cdm") + (version "7.4-19") + (source + (origin + (method url-fetch) + (uri (cran-uri "CDM" version)) + (sha256 + (base32 + "1ln1r3rk004fmk55iy08bjh3vv4wnkb8zg2wj3r9rq7pi8jn8fv4")))) + (properties `((upstream-name . "CDM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mvtnorm" ,r-mvtnorm) + ("r-polycor" ,r-polycor) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page + "https://github.com/alexanderrobitzsch/CDM") + (synopsis "Cognitive Diagnosis Modeling") + (description + "Functions for cognitive diagnosis modeling and multidimensional item +response modeling for dichotomous and polytomous item responses. This package +enables the estimation of the DINA and DINO model (Junker & Sijtsma, 2001, +), the multiple group (polytomous) GDINA model +(de la Torre, 2011, ), the multiple choice DINA +model (de la Torre, 2009, ), the general +diagnostic model (GDM; von Davier, 2008, ), the +structured latent class model (SLCA; Formann, 1992, +) and regularized latent class analysis +(Chen, Li, Liu, & Ying, 2017, ). See George, +Robitzsch, Kiefer, Gross, and Uenlue (2017) for +further details on estimation and the package structure. For tutorials on how +to use the CDM package see George and Robitzsch (2015, +) as well as Ravand and Robitzsch (2015).") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:19 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:19 +0000 Received: from localhost ([127.0.0.1]:42959 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyha-0008KJ-Rs for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:19 -0500 Received: from mail-wr1-f47.google.com ([209.85.221.47]:45119) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhU-0008Fj-OT for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:13 -0500 Received: by mail-wr1-f47.google.com with SMTP id a6so23132870wrx.12 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:12 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=2nK6WdsiB0oOiKZJgqk8Oe8hOIp1GMYt5uF3pEH27Uo=; b=MPZAGm9XUGDy0NY4gOGNbljUAO3aaa1iiSnCUO5AXqdldqiBk/r5Ur64Js4pA9/M0q sZAQ3JsQBzDZuRAWuoF/CuNQbvw9Vmpqtv+J3XPq2P5sTGHOdEi+ssO/DSpTz9vIzqmx MHsplDKir1+/5E2xFOcgDTcLYdSDZuzQGJqiH2LwPiqoWy2bss+3+5NuQfxy3eTh1APh bsaAXX/G+0MuUHT4CeFO2XNLCZirMgkiYe1cCyVKuvO52Tmxqxe8A31dO/oZvc+un8Ym NKf1hEbOdiZbx334xbQ2aoNzQIsv1OEk3ylgB5y7dcTAmpsGKGywvlYWaPn2YuKDdKOl gJlw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=2nK6WdsiB0oOiKZJgqk8Oe8hOIp1GMYt5uF3pEH27Uo=; b=cBkF8NMwRvYvwFRQkb5WpmevqaYD1BWA5cIAoSN7fSGlYfyDlVFeYXQSPtgMAfwrQC RFD5TQkRzXp4EBAG/ZL2YOKlXXV0tOLbg1JUNKerENN+UOgY4PMqBIbxMzNojS47vHHY oEDxB4IiUCj46aHajz6zgidTFMtyVuBSxDR6jFDJbyoyuXi+9K4RkUqWQnO0lLo/ZoMk pK4Rizy+nwJnQPsDCNk34swNkNYjUmI743ut2P4yD5MTXjArRAK6WWxEFh1RkeolqRvy moVALeFb4J5328gyNwI565PrYjIlVjzuWaIVk8MxNUNZW/XrgRhYL6T1/kUVVyC5Jwvr Z1RQ== X-Gm-Message-State: APjAAAXvCr9RUYu3pevB7aGKOqIfxwrN3FMhRqfVJWz6/TeJFfOdaLlT TFNVLtsD7q0S479BF65QusyeI3JtwMWUNAPyNkgtC1cgoW7aKNgUtwlfevSevG+c5UHMDdsjy13 L6W6B6zkM3xVacSRYCSDBUoOeLjWpLOv0yjeMz9rUWjSN07cy1H6gacsL8b8nRZjKPW1HT5iIRR DlzjeTF9gL X-Google-Smtp-Source: APXvYqzVwLhr7GWVz5km6fKW3JB4qBAR4VnSBcFVsRj0nJwdYlc6GmtEMIfKHxHjb4eIjiVlEp59qA== X-Received: by 2002:adf:b64b:: with SMTP id i11mr23987521wre.58.1580824626889; Tue, 04 Feb 2020 05:57:06 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.57.06 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:06 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 32/34] gnu: Add package r-tam Date: Tue, 4 Feb 2020 14:56:24 +0100 Message-Id: <20200204135626.28261-32-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-tam): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 396e9521a6..d7da059bee 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20168,3 +20168,36 @@ further details on estimation and the package structure. For tutorials on how to use the CDM package see George and Robitzsch (2015, ) as well as Ravand and Robitzsch (2015).") (license license:gpl2+))) + +(define-public r-tam + (package + (name "r-tam") + (version "3.3-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "TAM" version)) + (sha256 + (base32 + "1rkjp5x6wrk1dfspp1imvfals0wvy4w1wb8a5mhfbnilc7vgnlbq")))) + (properties `((upstream-name . "TAM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cdm" ,r-cdm) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page + "http://www.edmeasurementsurveys.com/TAM/Tutorials/") + (synopsis "Test Analysis Modules") + (description + "Includes marginal maximum likelihood estimation and joint maximum +likelihood estimation for unidimensional and multidimensional item response +models. The package functionality covers the Rasch model, 2PL model, 3PL +model, generalized partial credit model, multi-faceted Rasch model, nominal +item response model, structured latent class model, mixture distribution IRT +models, and located latent class models. Latent regression models and +plausible value imputation are also supported. For details see Adams, Wilson +and Wang, 1997 , Adams, Wilson and Wu, 1997 +, Formann, 1982 , +Formann, 1992 .") + (license license:gpl2+))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:19 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:19 +0000 Received: from localhost ([127.0.0.1]:42962 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhb-0008KR-9A for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:19 -0500 Received: from mail-wm1-f66.google.com ([209.85.128.66]:36097) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhV-0008G3-Dc for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:13 -0500 Received: by mail-wm1-f66.google.com with SMTP id p17so3794642wma.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:13 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=ZflUU1NdHYcmgAVUdjIh2O//eYgLG81upCAq6M0YF14=; b=2Qlg1psHUcPm9X5tU2VMZJjzs7ZnOjF7qgKJMYXXprwu+bCh7qrc0bDm26ue6Cwcd7 eyQVwNtasl1JPFwImXQkIvcEAAZhYAo4yoK7NrH3Utm8joBGMNX7Rk41NN3NYwqkvTEo 6L5sX8BNumwqy9iLL+ZUUn4wtEd4htnBxueJEqMzlRIXEQ6Hyz2cOfBlbcHfky7PHlFr GVvIB98mjfRagJuCeg1zCmJ/p0OnvfURmfApSHeM0i22MmLIvrUKX+OCwjI6rAFheMtT k759L4y2BJ9iIbV1owGzWO7KolWKkpvQB5ueFr3njyTiRzI1DySpJREAWjjZqci+iMgY zr9Q== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=ZflUU1NdHYcmgAVUdjIh2O//eYgLG81upCAq6M0YF14=; b=KWsEaxwmJWcNO2odxC3hSHvVud7xMH4k4e0ABIBVre1s3jCmzY6vMl1iOlxhzAhpII KOBU+zsI9qmkbrUsrEdvJMHgdSg+ESCZIwBLK35o5xkL3THzbBSRW7cimBcu/I/ozU+2 /skF5msR/jo6+XrfdaA76KmzoR39rs+lsTOHWgYgQupd6OTHPq3gMJLhypxUW1TGqRg8 e4wUyNj4P6MVpgkzFC4OGPph8IT5ektbtCgDkR02PHlI0a+uqETzglVtVCaSVVLgy8n9 Z3lrdvjrgQN2l3LvXGf5PT7ggJ0rxRpAUq7CU8zPSqcXpbPyL4/T2mMdMrDCF8xdh6k/ D71Q== X-Gm-Message-State: APjAAAUsdmRxWe+6Y9HbuIJDKh5N/Ujrl4fXcm3Nsm7iWeuuY+7dJGBT Bc3VE1KSxjFQ9uUXSRP+usrd2+oj742BHJi7s5m162ZWZg11DFlFtvtU5UvHB6WUdqO8w7Ndt6l qZY/rHXOK6BonehdeyS3aGPEbJ4HT5+qt1BKuL2mw1i9UeEivEVbc6sks0ouwI7hA+V01g2FoAG 0NjrjLlNyy X-Google-Smtp-Source: APXvYqxRBLu7BPwIRitn0WAXwQ+JKkK9X6UUDiFp2NM7trV+9B0OROgkeYQMlrtDlQbIFXM6wCnKZg== X-Received: by 2002:a1c:7c05:: with SMTP id x5mr5941156wmc.15.1580824627509; Tue, 04 Feb 2020 05:57:07 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.57.06 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:07 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 33/34] gnu: Add package r-erm Date: Tue, 4 Feb 2020 14:56:25 +0100 Message-Id: <20200204135626.28261-33-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-erm): New variable. --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d7da059bee..7e466e3fdf 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20201,3 +20201,35 @@ and Wang, 1997 , Adams, Wilson and Wu, 1997 , Formann, 1982 , Formann, 1992 .") (license license:gpl2+))) + +(define-public r-erm + (package + (name "r-erm") + (version "1.0-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "eRm" version)) + (sha256 + (base32 + "11p8j61arq1ih2qi33wf0442vcdbp3zvknzm5aknsifwl4mbzzly")))) + (properties `((upstream-name . "eRm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lattice" ,r-lattice) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page + "https://cran.r-project.org/package=eRm") + (synopsis "Extended Rasch Modeling") + (description + "Fits Rasch models (RM), linear logistic test models (LLTM), rating scale +model (RSM), linear rating scale models (LRSM), partial credit models (PCM), +and linear partial credit models (LPCM). Missing values are allowed in the +data matrix. Additional features are the ML estimation of the person +parameters, Andersen's LR-test, item-specific Wald test, Martin-Loef-Test, +nonparametric Monte-Carlo Tests, itemfit and personfit statistics including +infit and outfit measures, ICC and other plots, automated stepwise item +elimination, simulation module for various binary data matrices.") + (license license:gpl3))) -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 08:57:20 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:20 +0000 Received: from localhost ([127.0.0.1]:42965 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhb-0008Kg-Oc for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:20 -0500 Received: from mail-wm1-f46.google.com ([209.85.128.46]:34867) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhW-0008GR-6x for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:14 -0500 Received: by mail-wm1-f46.google.com with SMTP id b17so3807829wmb.0 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:57:14 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=KwkDu5DWiRLUOjQkwC/+kQEuoz+QgQ99+hoXjfj+aX4=; b=VlhNZi9wtXGiPKqUvUazwP20Qj76VKVSpwLsGMJxBceQQGULavNTKxg/Jt/hcB6v3J hIE6LNlTKyBA2hQPmYG90/dAPL3Ht9TxxNSzIuI6MFnk6L8LH2TDwrtmypQylKCfDc8O Wl5vsAR1CFMSE/48XWNMmowZ3YV+d6CCo5CZoQafrbYLiIMgdbs8NGaAVoISUSCea4zx 1/yMEdV9HzODLsl407LjDzt/4ZeIvEeEl01FT34/VpnqTq2KFIeCikvYAPvxZ5jWgAwO zaYn7MOBsicXPrAx1CpoacqcYU+Iz+jXOheb0uW7YBIIO+xfdrZ8GaT0hpEgt4RxHhty w0ew== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=KwkDu5DWiRLUOjQkwC/+kQEuoz+QgQ99+hoXjfj+aX4=; b=UvyJdtOAtRh+vpSUAPE/PsIARzYKu+UJITEDxUxqdUHDIC7CVu9sw3JuqwnTlf9rRP mKHGOwWBt9zICLXhI/1yHWdMhqdQPqA6/DBMtJs0nPh4D9OqRXwyUx5VzXcIjQspmZ9P mTY4yoXNgR/UWGLk9gj5L0cim8VnpEx6xcwOwhZ9Xl58NSTJDzF5GX9RY8sBDYu1iDD6 95aVFS6kPaZ9yie4051RMdKRwCG+k0mTjKmCo4/4p3rClvh6WYEar8aeoWPWZZNqJIcK uV1qmaDT9iE9+Dp7ZeJzCrBoY5uYpeKMjF1ArbzrhH5WbASKb1GLKg48EXI/5KI23TY3 qJ9A== X-Gm-Message-State: APjAAAUtDh30bdeTaTHPFO5eu4ejgWgHFRjo3Iekr0vgzf5lHP1FW+Yd zAHVVOLmjFjqp0TBdq1DH1ArA+QJguhZsPW/cqDYuc23KwbdhewDeONWHZJ3CDUSPFrK1ri/Aaw PL7CxX1oEOL+ONJ9cNDGgnbYLfSdPflf46HSQ4BEwXEsXlk7SjvTMTcaYhmXz/RiektBDt3nHDK gQR5uk2tPt X-Google-Smtp-Source: APXvYqz8rIn0wKZ72oU5O4znKwO9dzcIWMRZPfvoIc3cn7AhD3jKGd7YO3VDmIZeglX7c/UI4cBjLQ== X-Received: by 2002:a05:600c:1007:: with SMTP id c7mr5882194wmc.158.1580824628392; Tue, 04 Feb 2020 05:57:08 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.57.07 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:57:07 -0800 (PST) From: Lars-Dominik Braun To: 39416@debbugs.gnu.org Subject: [PATCH 34/34] gnu: Add package r-irtoys Date: Tue, 4 Feb 2020 14:56:26 +0100 Message-Id: <20200204135626.28261-34-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: Lars-Dominik Braun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/cran.scm (r-irtoys): New variable. --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7e466e3fdf..f83ac22d50 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20233,3 +20233,35 @@ nonparametric Monte-Carlo Tests, itemfit and personfit statistics including infit and outfit measures, ICC and other plots, automated stepwise item elimination, simulation module for various binary data matrices.") (license license:gpl3))) + +(define-public r-irtoys + (package + (name "r-irtoys") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "irtoys" version)) + (sha256 + (base32 + "0h6iiaxikhbxhbyksbjnb09qdxinlkwr2v9yzs5wslbni14paq5q")))) + (properties `((upstream-name . "irtoys"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ltm" ,r-ltm) ("r-sm" ,r-sm))) + (home-page + "https://cran.r-project.org/package=irtoys") + (synopsis + "Collection of Functions Related to Item Response Theory (IRT)") + (description + "This package provides a collection of functions useful in learning and +practicing IRT, which can be combined into larger programs. Provides basic CTT +analysis, a simple common interface to the estimation of item parameters in IRT +models for binary responses with three different programs (ICL, BILOG-MG, and +ltm), ability estimation (MLE, BME, EAP, WLE, plausible values), item and +person fit statistics, scaling methods (MM, MS, Stocking-Lord, and the complete +Hebaera method), and a rich array of parametric and non-parametric (kernel) +plots. Estimates and plots Haberman's interaction model when all items are +dichotomously scored.") + (license license:gpl2+))) + -- 2.20.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 04 10:56:24 2020 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 15:56:24 +0000 Received: from localhost ([127.0.0.1]:44603 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iz0Yp-00039k-O7 for submit@debbugs.gnu.org; Tue, 04 Feb 2020 10:56:24 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21117) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iz0Yn-00039c-Ro for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 10:56:22 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1580831777; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type; bh=m6E7843yns3Fw1jy6qiptLyFvbtCihDkoQlveCPuzkk=; b=fvlbay0f+y3qDI/A8Mx/w2QX1zsDmEdcjte54Ghhi97P8N8fKNY9Mo2l1chFmi3x ABFYjERWtZXHU/wChQFmjVmwYQOr7AfwE/V/tYGXGAAG+zVA1tdTFxVrw+SBAHPqubX 868OHpyFsooX1JCmiOOLRPqwn1+F1K/fNBQ/MQQc= Received: from localhost (p54AD4C85.dip0.t-ipconnect.de [84.173.76.133]) by mx.zohomail.com with SMTPS id 1580831774663392.80766313224035; Tue, 4 Feb 2020 07:56:14 -0800 (PST) References: <20200204135451.GG2917@zpidnp36> User-agent: mu4e 1.2.0; emacs 26.3 From: Ricardo Wurmus To: Lars-Dominik Braun Subject: Re: [bug#39416] Bulk import of R packages In-reply-to: <20200204135451.GG2917@zpidnp36> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Tue, 04 Feb 2020 16:56:11 +0100 Message-ID: <87v9omqrc4.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: 39416@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Lars, > this patch series adds 34 packages from CRAN imported using `guix import cran > -r`. Thank you! Could you please also do the following: * modify the description to contain only complete sentences * adjust the letter case in the synopsis (CRAN uppercases all initials) * adjust the indentation with etc/indent-code.el * use @dfn{Some Long Term} (SLT) in descriptions where necessary * wrap URLs in the description in Texinfo syntax (especially all the things. -- Ricardo From debbugs-submit-bounces@debbugs.gnu.org Thu Feb 06 08:53:15 2020 Received: (at 39416) by debbugs.gnu.org; 6 Feb 2020 13:53:15 +0000 Received: from localhost ([127.0.0.1]:47134 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1izhaa-0000LR-OB for submit@debbugs.gnu.org; Thu, 06 Feb 2020 08:53:15 -0500 Received: from mail-wm1-f53.google.com ([209.85.128.53]:53922) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1izhaV-0000Kt-Mh for 39416@debbugs.gnu.org; Thu, 06 Feb 2020 08:53:02 -0500 Received: by mail-wm1-f53.google.com with SMTP id s10so46546wmh.3 for <39416@debbugs.gnu.org>; Thu, 06 Feb 2020 05:52:59 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=date:from:to:cc:subject:message-id:references:mime-version :content-disposition:in-reply-to:user-agent; bh=SGNPrDoa/o7izMu8u2GPqr0Vmm5iOJBYO+hTTqTURlw=; b=cGXm2CLI2bw3N4d7DbW0hiSLADEthwiQkKYnJgHN50NAKttLm+OTgUp/JU+F2L92eR +zbjnCND0uGPV146t6wFzJQbeOtXbh7JhIf+trwdpdPN6l2J+5Z6YNKFPwJji6nfgpD5 FBs0zy+6RtMx8OGyeWdm4QYClyK4P5Ag1ekrXWi3yO1XFW7+CrNQlPxvnpirY5TCc8zb AjGMS02y2LsKDxk3xd+YaP6jasF/KZpgYxDzl2GvnKXgOjmhzGN9aRHVAw+CEvg2ljiJ 1SbYGcWaf7dHAXfqGkj/IZnssYVGR+gzNQE+oIt+swDSo+qnWCnCjkzutawfIXBIQoAc EOGg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:date:from:to:cc:subject:message-id:references :mime-version:content-disposition:in-reply-to:user-agent; bh=SGNPrDoa/o7izMu8u2GPqr0Vmm5iOJBYO+hTTqTURlw=; b=ePYd1r6eicYIq4tiESiWUyunn3KQ8QFurAqjew7QLeuGQezUC+CU9844jJylNV2WXU ENSXVuHJiOvyMb/GPlCmdoteOHxHHohnd3uJNWBhS0aNP4XRVv3/ZGOkmfFK0J5onXL0 KSW2asg+sfj88G9jAQKmFN36bud8PnRtZvVY/kEtrujH5ZzmI5D/AJ5rXwEZjmUYHWxs pwQLFiGSmKh16tvkRnHpH5nRVzMTmHpJ9WPt3XdXEQ9lOuAcjJyT3Oev6NoOsIqUHN3n IlPdF8xY/fk9XkTINU5OvqSxd+PAYQ/UqFPZdo3HJErOoJSNS/C7ZaJsTu1EQ+bkLsFf bSug== X-Gm-Message-State: APjAAAWs0nEDfRkdHVx4QD64azIM8ufHtSQT0Ks/aOVrGvPpYOBDpiDy Hn1Ly9KKsVUjjRVz//7CTjdIkma5Zso8/tGhiMKEFMVvsBnWrXpg0A63XFwmrUOdGdsvH7IbI/M AVdgtyvUmozGKoZAh9hhnsaGUQBgZALJpLIq8LcXrkq4fBKdgQuIq/Y4bOpGE8z2gqV79iRaKUJ bmobGVkTcB X-Google-Smtp-Source: APXvYqw+yVqNLORAPcUaOS8Mw+sgatj8KPWafpv+xI+b2ccaymUaie1J7H0ZRlfyAWuQXVcMckCUlg== X-Received: by 2002:a1c:113:: with SMTP id 19mr4874743wmb.95.1580997173446; Thu, 06 Feb 2020 05:52:53 -0800 (PST) Received: from localhost (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id n13sm3849299wmd.21.2020.02.06.05.52.51 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 06 Feb 2020 05:52:51 -0800 (PST) Date: Thu, 6 Feb 2020 14:52:52 +0100 From: Lars-Dominik Braun To: Ricardo Wurmus Subject: Re: [bug#39416] Bulk import of R packages Message-ID: <20200206135252.GM2917@zpidnp36> References: <20200204135451.GG2917@zpidnp36> <87v9omqrc4.fsf@elephly.net> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="EP0wieDxd4TSJjHq" Content-Disposition: inline In-Reply-To: <87v9omqrc4.fsf@elephly.net> User-Agent: Mutt/1.10.1 (2018-07-13) X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416 Cc: 39416@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --EP0wieDxd4TSJjHq Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Hi Ricardo, > Could you please also do the following: > > * modify the description to contain only complete sentences > * adjust the letter case in the synopsis (CRAN uppercases all initials) > * adjust the indentation with etc/indent-code.el > * use @dfn{Some Long Term} (SLT) in descriptions where necessary > * wrap URLs in the description in Texinfo syntax (especially all the > things. done, I hope I did not miss anything. Lars --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0001-gnu-Add-package-r-fracdiff.patch" >From 3abb7b9d4d94793aacf11ad5784c3908ecc9c752 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:01:03 +0100 Subject: [v2 01/34] gnu: Add package r-fracdiff * gnu/packages/cran.scm (r-fracdiff): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 58ceed06d0..2e3f397bcf 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19259,3 +19259,27 @@ are followed and which ones are not) from one package and use it to check another. This makes it easier to find and correct the most important problems first.") (license license:gpl3))) + +(define-public r-fracdiff + (package + (name "r-fracdiff") + (version "1.5-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "fracdiff" version)) + (sha256 + (base32 + "1dhfjlhr9sb38qgpsx0sm73l9lgc13d0fk32l7fmjfnalhr3n45q")))) + (properties `((upstream-name . "fracdiff"))) + (build-system r-build-system) + (home-page + "https://github.com/mmaechler/fracdiff") + (synopsis + "Fractionally differenced ARIMA aka ARFIMA(P,d,q) models") + (description + "Maximum likelihood estimation of the parameters of a fractionally +differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989); +including inference and basic methods. Some alternative algorithms to estimate +\"H\".") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0002-gnu-Add-package-r-forecast.patch" >From c76c0d46f23ea3a3a789aa8a0dba51b7617769af Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:04:16 +0100 Subject: [v2 02/34] gnu: Add package r-forecast * gnu/packages/cran.scm (r-forecast): New variable. --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2e3f397bcf..c82049aa18 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19283,3 +19283,40 @@ differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989); including inference and basic methods. Some alternative algorithms to estimate \"H\".") (license license:gpl2+))) + +(define-public r-forecast + (package + (name "r-forecast") + (version "8.10") + (source + (origin + (method url-fetch) + (uri (cran-uri "forecast" version)) + (sha256 + (base32 + "0jccr2wg7sii38lyqrs58fkxf2az7nw6v0jya27hpbz9bg8ib3kr")))) + (properties `((upstream-name . "forecast"))) + (build-system r-build-system) + (propagated-inputs + `(("r-colorspace" ,r-colorspace) + ("r-fracdiff" ,r-fracdiff) + ("r-ggplot2" ,r-ggplot2) + ("r-lmtest" ,r-lmtest) + ("r-magrittr" ,r-magrittr) + ("r-nnet" ,r-nnet) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-timedate" ,r-timedate) + ("r-tseries" ,r-tseries) + ("r-urca" ,r-urca) + ("r-zoo" ,r-zoo) + ;; needed for vignettes + ("r-knitr" ,r-knitr))) + (home-page "http://pkg.robjhyndman.com/forecast/") + (synopsis + "Forecasting functions for time series and linear models") + (description + "Methods and tools for displaying and analysing univariate time series +forecasts including exponential smoothing via state space models and automatic +ARIMA modelling.") + (license license:gpl3))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0003-gnu-Add-package-r-xmisc.patch" >From 7016a2fa966ca15710cf2abfe8354b4dff33c92f Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:06:29 +0100 Subject: [v2 03/34] gnu: Add package r-xmisc * gnu/packages/cran.scm (r-xmisc): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c82049aa18..01a6b5dad8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19320,3 +19320,25 @@ including inference and basic methods. Some alternative algorithms to estimate forecasts including exponential smoothing via state space models and automatic ARIMA modelling.") (license license:gpl3))) + +(define-public r-xmisc + (package + (name "r-xmisc") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "Xmisc" version)) + (sha256 + (base32 + "11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1")))) + (properties `((upstream-name . "Xmisc"))) + (build-system r-build-system) + (home-page + "http://cran.r-project.org/package=Xmisc") + (synopsis + "Xiaobei's miscellaneous classes and functions") + (description + "Xiaobei's miscellaneous classes and functions, which are useful when +developing R packages for OOP using R Reference Class.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0004-gnu-Add-package-r-proxyc.patch" >From e0d330ab328c1adcb0674b9a739840bdff9ffb0d Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:55:46 +0100 Subject: [v2 04/34] gnu: Add package r-proxyc * gnu/packages/cran.scm (r-proxyc): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 01a6b5dad8..dcdba09f85 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19342,3 +19342,33 @@ ARIMA modelling.") "Xiaobei's miscellaneous classes and functions, which are useful when developing R packages for OOP using R Reference Class.") (license license:gpl2+))) + +(define-public r-proxyc + (package + (name "r-proxyc") + (version "0.1.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "proxyC" version)) + (sha256 + (base32 + "159bc42x4shm6n3rh9fc8ziv3ivq0ipmpbasrh279hhn1prc8gg6")))) + (properties `((upstream-name . "proxyC"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppparallel" ,r-rcppparallel))) + (home-page + "https://cran.r-project.org/package=proxyC") + (synopsis + "Computes proximity in large sparse matrices") + (description + "Computes proximity between rows or columns of large matrices efficiently +in C++. Functions are optimised for large sparse matrices using the Armadillo +and Intel TBB libraries. Among several built-in similarity/distance measures, +computation of correlation, cosine similarity and Euclidean distance is +particularly fast.") + (license license:gpl3))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0005-gnu-Add-package-r-isocodes.patch" >From 2a647c53cb6f68ddf3c61e0de6287faeb9a5a5ca Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:57:10 +0100 Subject: [v2 05/34] gnu: Add package r-isocodes * gnu/packages/cran.scm (r-isocodes): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index dcdba09f85..a3f09317aa 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19372,3 +19372,26 @@ and Intel TBB libraries. Among several built-in similarity/distance measures, computation of correlation, cosine similarity and Euclidean distance is particularly fast.") (license license:gpl3))) + +(define-public r-isocodes + (package + (name "r-isocodes") + (version "2019.12.22") + (source + (origin + (method url-fetch) + (uri (cran-uri "ISOcodes" version)) + (sha256 + (base32 + "1k2f2258bwzs0b3nxma9kcw395qkljvk514a7047rx4dn0iwd874")))) + (properties `((upstream-name . "ISOcodes"))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/package=ISOcodes") + (synopsis "Selected ISO codes") + (description + "ISO language, territory, currency, script and character codes. Provides +ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO +15924 script codes, and the ISO 8859 character codes as well as the UN M.49 +area codes.") + (license license:gpl2))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0006-gnu-Add-package-r-stopwords.patch" >From 53b489d5ee620e8168df868d727e72afe83e3256 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:57:46 +0100 Subject: [v2 06/34] gnu: Add package r-stopwords * gnu/packages/cran.scm (r-stopwords): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a3f09317aa..144fd97f7e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19395,3 +19395,25 @@ ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO 15924 script codes, and the ISO 8859 character codes as well as the UN M.49 area codes.") (license license:gpl2))) + +(define-public r-stopwords + (package + (name "r-stopwords") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "stopwords" version)) + (sha256 + (base32 + "1nmi0bpd0c238g5b8ch1v034m5ng9llhs519cgxdrj3sh9fplwlv")))) + (properties `((upstream-name . "stopwords"))) + (build-system r-build-system) + (propagated-inputs `(("r-isocodes" ,r-isocodes))) + (home-page + "https://github.com/quanteda/stopwords") + (synopsis "Multilingual stopword lists") + (description + "This package provides multiple sources of stopwords, for use in text +analysis and natural language processing.") + (license license:expat))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0007-gnu-Add-package-r-spacyr.patch" >From 94b2aba6fd69dd59d8236caf350fbae490dfb119 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:58:57 +0100 Subject: [v2 07/34] gnu: Add package r-spacyr * gnu/packages/cran.scm (r-spacyr): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 144fd97f7e..8eb595e29d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19417,3 +19417,26 @@ area codes.") "This package provides multiple sources of stopwords, for use in text analysis and natural language processing.") (license license:expat))) + +(define-public r-spacyr + (package + (name "r-spacyr") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "spacyr" version)) + (sha256 + (base32 + "1xsiz6zx89vs6ykrkkp011d8fz4ksdgnf5nyaq5ynjr6zv865vks")))) + (properties `((upstream-name . "spacyr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-reticulate" ,r-reticulate))) + (home-page "https://spacyr.quanteda.io") + (synopsis "Wrapper to the 'spaCy' NLP library") + (description + "An R wrapper to the Python @code{spaCy} NLP library, from +@url{http://spacy.io}.") + (license license:gpl3))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0008-gnu-Add-package-r-snowballc.patch" >From 837228796294044a49b0ecbf823308f98e6d0164 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 16:59:39 +0100 Subject: [v2 08/34] gnu: Add package r-snowballc * gnu/packages/cran.scm (r-snowballc): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8eb595e29d..788601b894 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19440,3 +19440,28 @@ analysis and natural language processing.") "An R wrapper to the Python @code{spaCy} NLP library, from @url{http://spacy.io}.") (license license:gpl3))) + +(define-public r-snowballc + (package + (name "r-snowballc") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "SnowballC" version)) + (sha256 + (base32 + "0b7pqdavf5jbf8si4ybnii5fff39p3b1rb5rym05j8s48hs7sqb1")))) + (properties `((upstream-name . "SnowballC"))) + (build-system r-build-system) + (home-page + "https://r-forge.r-project.org/projects/r-temis/") + (synopsis + "Snowball stemmers based on the C 'libstemmer' UTF-8 library") + (description + "An R interface to the C @code{libstemmer} library that implements Porter's +word stemming algorithm for collapsing words to a common root to aid comparison +of vocabulary. Currently supported languages are Danish, Dutch, English, +Finnish, French, German, Hungarian, Italian, Norwegian, Portuguese, Romanian, +Russian, Spanish, Swedish and Turkish.") + (license license:bsd-3))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0009-gnu-Add-package-r-quanteda.patch" >From a9c4d12e7a19b209dcb2969e8918a5ac5123eccf Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 17:00:45 +0100 Subject: [v2 09/34] gnu: Add package r-quanteda * gnu/packages/cran.scm (r-quanteda): New variable. --- gnu/packages/cran.scm | 48 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 48 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 788601b894..3096739012 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19465,3 +19465,51 @@ of vocabulary. Currently supported languages are Danish, Dutch, English, Finnish, French, German, Hungarian, Italian, Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (license license:bsd-3))) + +(define-public r-quanteda + (package + (name "r-quanteda") + (version "1.5.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "quanteda" version)) + (sha256 + (base32 + "0iv25rpx5cl9ansazjs0qb97pniajrxf4mqsnb5q98y2hil9ipd3")))) + (properties `((upstream-name . "quanteda"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-extrafont" ,r-extrafont) + ("r-fastmatch" ,r-fastmatch) + ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) + ("r-lubridate" ,r-lubridate) + ("r-magrittr" ,r-magrittr) + ("r-matrix" ,r-matrix) + ("r-network" ,r-network) + ("r-proxyc" ,r-proxyc) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppparallel" ,r-rcppparallel) + ("r-rspectra" ,r-rspectra) + ("r-sna" ,r-sna) + ("r-snowballc" ,r-snowballc) + ("r-spacyr" ,r-spacyr) + ("r-stopwords" ,r-stopwords) + ("r-stringi" ,r-stringi) + ("r-xml2" ,r-xml2) + ("r-yaml" ,r-yaml))) + (home-page "https://quanteda.io") + (synopsis + "Quantitative analysis of textual data") + (description + "This package provides a fast, flexible, and comprehensive framework for +quantitative text analysis in R. Provides functionality for corpus management, +creating and manipulating tokens and ngrams, exploring keywords in context, +forming and manipulating sparse matrices of documents by features and feature +co-occurrences, analyzing keywords, computing feature similarities and +distances, applying content dictionaries, applying supervised and unsupervised +machine learning, visually representing text and text analyses, and more.") + (license license:gpl3))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0010-gnu-Add-package-r-topicmodels.patch" >From 52bd26df655b2f921cfef11e613fc0bca9eebedd Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 17:55:05 +0100 Subject: [v2 10/34] gnu: Add package r-topicmodels * gnu/packages/cran.scm (r-topicmodels): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3096739012..38cab6f179 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19513,3 +19513,33 @@ co-occurrences, analyzing keywords, computing feature similarities and distances, applying content dictionaries, applying supervised and unsupervised machine learning, visually representing text and text analyses, and more.") (license license:gpl3))) + +(define-public r-topicmodels + (package + (name "r-topicmodels") + (version "0.2-9") + (source + (origin + (method url-fetch) + (uri (cran-uri "topicmodels" version)) + (sha256 + (base32 + "1757r5x8bsl4dk106xg6481mvdkdz9vwg87n7rpbvdkavsvhyxs0")))) + (properties `((upstream-name . "topicmodels"))) + (build-system r-build-system) + (native-inputs + `(("gsl" ,gsl))) + (propagated-inputs + `(("r-modeltools" ,r-modeltools) + ("r-slam" ,r-slam) + ("r-tm" ,r-tm))) + (home-page + "https://cran.r-project.org/package=topicmodels") + (synopsis "Topic models") + (description + "This package provides an interface to the C code for @dfn{Latent +Dirichlet Allocation} (LDA) models and @dfn{Correlated Topics Models} (CTM) by +David M. Blei and co-authors and the C++ code for fitting @abbr{LDA} models +using Gibbs sampling by Xuan-Hieu Phan and co-authors.") + (license license:gpl2))) + -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0011-gnu-Add-package-r-stm.patch" >From 132331d2b31c792e56dfa9c365b32a9dbce08102 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 17:57:12 +0100 Subject: [v2 11/34] gnu: Add package r-stm * gnu/packages/cran.scm (r-stm): New variable. --- gnu/packages/cran.scm | 38 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 38cab6f179..a2c7ca2e71 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19543,3 +19543,41 @@ David M. Blei and co-authors and the C++ code for fitting @abbr{LDA} models using Gibbs sampling by Xuan-Hieu Phan and co-authors.") (license license:gpl2))) +(define-public r-stm + (package + (name "r-stm") + (version "1.3.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "stm" version)) + (sha256 + (base32 + "1yyfxaxqc6yq0yq68zhdnhpwpvsyp71dlmivn7zxixfmp932s6cn")))) + (properties `((upstream-name . "stm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-glmnet" ,r-glmnet) + ("r-lda" ,r-lda) + ("r-matrix" ,r-matrix) + ("r-matrixstats" ,r-matrixstats) + ("r-quadprog" ,r-quadprog) + ("r-quanteda" ,r-quanteda) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-slam" ,r-slam) + ("r-stringr" ,r-stringr))) + (home-page "http://www.structuraltopicmodel.com/") + (synopsis + "Estimation of the Structural Topic Model") + (description + "The @dfn{Structural Topic Model} (STM) allows researchers to estimate +topic models with document-level covariates. The package also includes tools +for model selection, visualization, and estimation of topic-covariate +regressions. Methods developed in Roberts et al (2014) +@url{doi:10.1111/ajps.12103} and Roberts et al (2016) +@url{doi:10.1080/01621459.2016.1141684}. Vignette is Roberts et al (2019) +@url{doi:10.18637/jss.v091.i02}.") + (license license:expat))) + -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0012-gnu-Add-package-r-polycor.patch" >From 740ea214eeaf46c0d4caed97cb9127f8d666bb71 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 18:27:31 +0100 Subject: [v2 12/34] gnu: Add package r-polycor * gnu/packages/cran.scm (r-polycor): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a2c7ca2e71..9c1e56bf33 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19581,3 +19581,27 @@ regressions. Methods developed in Roberts et al (2014) @url{doi:10.18637/jss.v091.i02}.") (license license:expat))) +(define-public r-polycor + (package + (name "r-polycor") + (version "0.7-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "polycor" version)) + (sha256 + (base32 + "0wzwzklflbhi8sv9m7ijwr16v9zmkk0j0v4pbcpf32f8lbn3psna")))) + (properties `((upstream-name . "polycor"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix) ("r-mvtnorm" ,r-mvtnorm))) + (home-page + "https://r-forge.r-project.org/projects/polycor/") + (synopsis + "Polychoric and polyserial correlations") + (description + "Computes polychoric and polyserial correlations by quick \"two-step\" +methods or ML, optionally with standard errors; tetrachoric and biserial +correlations are special cases.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0013-gnu-Add-package-r-msm.patch" >From d6c574f2a3a2afbf115b59684cdcc89075262c20 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 18:32:17 +0100 Subject: [v2 13/34] gnu: Add package r-msm * gnu/packages/cran.scm (r-msm): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9c1e56bf33..2d8e2f6f7d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19605,3 +19605,32 @@ regressions. Methods developed in Roberts et al (2014) methods or ML, optionally with standard errors; tetrachoric and biserial correlations are special cases.") (license license:gpl2+))) + +(define-public r-msm + (package + (name "r-msm") + (version "1.6.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "msm" version)) + (sha256 + (base32 + "1d32y8f0vb2dfv3999liigpns788j145nrvd1xpxb9i2lsg8mwgk")))) + (properties `((upstream-name . "msm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-expm" ,r-expm) + ("r-mvtnorm" ,r-mvtnorm) + ("r-survival" ,r-survival))) + (home-page "https://github.com/chjackson/msm") + (synopsis + "Multi-state Markov and hidden Markov models in continuous time") + (description + "This package provides functions for fitting continuous-time Markov and +hidden Markov multi-state models to longitudinal data. Designed for processes +observed at arbitrary times in continuous time (panel data) but some other +observation schemes are supported. Both Markov transition rates and the hidden +Markov output process can be modelled in terms of covariates, which may be +constant or piecewise-constant in time.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0014-gnu-Add-package-r-ltm.patch" >From 694b581020d5b82ffb2ef3fe2a6a05bf0f703c05 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Fri, 31 Jan 2020 18:32:48 +0100 Subject: [v2 14/34] gnu: Add package r-ltm * gnu/packages/cran.scm (r-ltm): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2d8e2f6f7d..ad4cf0bb0b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19634,3 +19634,30 @@ observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time.") (license license:gpl2+))) + +(define-public r-ltm + (package + (name "r-ltm") + (version "1.1-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ltm" version)) + (sha256 + (base32 + "1qrgzwx5l58qf5rfp1knxc84r0g943q5sdr3ky74zzwpnmrf2vf7")))) + (properties `((upstream-name . "ltm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-msm" ,r-msm) + ("r-polycor" ,r-polycor))) + (home-page "https://github.com/drizopoulos/ltm") + (synopsis "Latent trait models under IRT") + (description + "Analysis of multivariate dichotomous and polytomous data using latent +trait models under the Item Response Theory approach. It includes the Rasch, +the Two-Parameter Logistic, the Birnbaum's Three-Parameter, the Graded +Response, and the Generalized Partial Credit Models.") + (license license:gpl2+))) + -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0015-gnu-Add-package-r-mi.patch" >From 432030ab35533f974358b0fdd580c3f2658978b8 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 13:30:50 +0100 Subject: [v2 15/34] gnu: Add package r-mi * gnu/packages/cran.scm (r-mi): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ad4cf0bb0b..25c3057bea 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19661,3 +19661,30 @@ the Two-Parameter Logistic, the Birnbaum's Three-Parameter, the Graded Response, and the Generalized Partial Credit Models.") (license license:gpl2+))) +(define-public r-mi + (package + (name "r-mi") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "mi" version)) + (sha256 + (base32 + "1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l")))) + (properties `((upstream-name . "mi"))) + (build-system r-build-system) + (propagated-inputs + `(("r-arm" ,r-arm) ("r-matrix" ,r-matrix))) + (home-page + "http://www.stat.columbia.edu/~gelman/") + (synopsis + "Missing data imputation and model checking") + (description + "The mi package provides functions for data manipulation, imputing +missing values in an approximate Bayesian framework, diagnostics of the models +used to generate the imputations, confidence-building mechanisms to validate +some of the assumptions of the imputation algorithm, and functions to analyze +multiply imputed data sets with the appropriate degree of sampling +uncertainty.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0016-gnu-Add-package-r-matrixcalc.patch" >From 166cc18121bd3e5859b1b8c5404b56a44f83525d Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 13:31:48 +0100 Subject: [v2 16/34] gnu: Add package r-matrixcalc * gnu/packages/cran.scm (r-matrixcalc): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 25c3057bea..7807bdb7aa 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19688,3 +19688,29 @@ some of the assumptions of the imputation algorithm, and functions to analyze multiply imputed data sets with the appropriate degree of sampling uncertainty.") (license license:gpl2+))) + +(define-public r-matrixcalc + (package + (name "r-matrixcalc") + (version "1.0-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "matrixcalc" version)) + (sha256 + (base32 + "1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp")))) + (properties `((upstream-name . "matrixcalc"))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/web/packages/matrixcalc") + (synopsis + "Collection of functions for matrix calculations") + (description + "This package provides a collection of functions to support matrix +calculations for probability, econometric and numerical analysis. There are +additional functions that are comparable to APL functions which are useful for +actuarial models such as pension mathematics. This package is used for +teaching and research purposes at the Department of Finance and Risk +Engineering, New York University, Polytechnic Institute, Brooklyn, NY 11201.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0017-gnu-Add-package-r-sem.patch" >From d7f34322d1a96a56bb63e4387a381bd061e5837e Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:07:00 +0100 Subject: [v2 17/34] gnu: Add package r-sem * gnu/packages/cran.scm (r-sem): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7807bdb7aa..63a2a8dd2e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19714,3 +19714,30 @@ actuarial models such as pension mathematics. This package is used for teaching and research purposes at the Department of Finance and Risk Engineering, New York University, Polytechnic Institute, Brooklyn, NY 11201.") (license license:gpl2+))) + +(define-public r-sem + (package + (name "r-sem") + (version "3.1-9") + (source + (origin + (method url-fetch) + (uri (cran-uri "sem" version)) + (sha256 + (base32 + "1f9c6g6pfx66gd2pappcsqh484ah6a0x4z47hpd46rah0817hcsa")))) + (properties `((upstream-name . "sem"))) + (build-system r-build-system) + (propagated-inputs + `(("r-boot" ,r-boot) + ("r-mass" ,r-mass) + ("r-matrixcalc" ,r-matrixcalc) + ("r-mi" ,r-mi))) + (home-page "https://cran.r-project.org/package=sem") + (synopsis "Structural equation models") + (description + "This package provides functions for fitting general linear structural +equation models (with observed and latent variables) using the RAM approach, +and for fitting structural equations in observed-variable models by two-stage +least squares.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0018-gnu-Add-package-r-semtools.patch" >From f6b6d4b85612dd717758fc33f778bf9a76772824 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:07:41 +0100 Subject: [v2 18/34] gnu: Add package r-semtools * gnu/packages/cran.scm (r-semtools): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 63a2a8dd2e..1e643d0baa 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19741,3 +19741,25 @@ equation models (with observed and latent variables) using the RAM approach, and for fitting structural equations in observed-variable models by two-stage least squares.") (license license:gpl2+))) + +(define-public r-semtools + (package + (name "r-semtools") + (version "0.5-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "semTools" version)) + (sha256 + (base32 + "1zj841pszfsikzp82cmh463qyc4xhdrqjqcnhc2r8mcflv12irv6")))) + (properties `((upstream-name . "semTools"))) + (build-system r-build-system) + (propagated-inputs `(("r-lavaan" ,r-lavaan))) + (home-page + "https://github.com/simsem/semTools/wiki") + (synopsis + "Useful tools for structural equation modeling") + (description + "This package provides useful tools for structural equation modeling.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0019-gnu-Add-package-r-regsem.patch" >From 3702fa7f53f63b6a67ea744ee78c49fa65725136 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:08:09 +0100 Subject: [v2 19/34] gnu: Add package r-regsem * gnu/packages/cran.scm (r-regsem): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1e643d0baa..5c0b323d21 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19763,3 +19763,33 @@ least squares.") (description "This package provides useful tools for structural equation modeling.") (license license:gpl2+))) + +(define-public r-regsem + (package + (name "r-regsem") + (version "1.3.9") + (source + (origin + (method url-fetch) + (uri (cran-uri "regsem" version)) + (sha256 + (base32 + "1klml4bp76mplipxaca7fk653cjxgdmmiciksxgiglxkzmf2bdps")))) + (properties `((upstream-name . "regsem"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lavaan" ,r-lavaan) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rsolnp" ,r-rsolnp))) + (home-page + "https://cran.r-project.org/package=regsem") + (synopsis + "Regularized structural equation modeling") + (description + "Uses both ridge and lasso penalties (and extensions) to penalize +specific parameters in structural equation models. The package offers +additional cost functions, cross validation, and other extensions beyond +traditional structural equation models. Also contains a function to perform +@dfn{exploratory mediation} (XMed).") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0020-gnu-Add-package-r-stanheaders.patch" >From 0ee20f94d933d0d065fd192c5a914ab5d02ea0fd Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:08:37 +0100 Subject: [v2 20/34] gnu: Add package r-stanheaders * gnu/packages/cran.scm (r-stanheaders): New variable. --- gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5c0b323d21..d3d382761a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19793,3 +19793,38 @@ additional cost functions, cross validation, and other extensions beyond traditional structural equation models. Also contains a function to perform @dfn{exploratory mediation} (XMed).") (license license:gpl2+))) + +(define-public r-stanheaders + (package + (name "r-stanheaders") + (version "2.19.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "StanHeaders" version)) + (sha256 + (base32 + "0kyka130sin4nbji7p840394ynhmaynv9jyi94ddbplj83i2nhx3")))) + (properties `((upstream-name . "StanHeaders"))) + (build-system r-build-system) + (inputs `(("pandoc" ,ghc-pandoc))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://mc-stan.org/") + (synopsis "C++ header files for Stan") + (description + "The C++ header files of the Stan project are provided by this package, +but it contains no R code or function documentation. There is a shared object +containing part of the @code{CVODES} library, but it is not accessible from R. +@code{r-stanheaders} is only useful for developers who want to utilize the +@code{LinkingTo} directive of their package's DESCRIPTION file to build on the +Stan library without incurring unnecessary dependencies. The Stan project +develops a probabilistic programming language that implements full or +approximate Bayesian statistical inference via Markov Chain Monte Carlo or +variational methods and implements (optionally penalized) maximum likelihood +estimation via optimization. The Stan library includes an advanced automatic +differentiation scheme, templated statistical and linear algebra functions that +can handle the automatically differentiable scalar types (and doubles, ints, +etc.), and a parser for the Stan language. The @code{r-rstan} package provides +user-facing R functions to parse, compile, test, estimate, and analyze Stan +models.") + (license license:bsd-3))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0021-gnu-Add-package-r-rpf.patch" >From 0f0669e6437b46097f27eb9c2bda520635d72af2 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:09:10 +0100 Subject: [v2 21/34] gnu: Add package r-rpf * gnu/packages/cran.scm (r-rpf): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d3d382761a..3934f2085f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19828,3 +19828,29 @@ etc.), and a parser for the Stan language. The @code{r-rstan} package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.") (license license:bsd-3))) + +(define-public r-rpf + (package + (name "r-rpf") + (version "0.62") + (source + (origin + (method url-fetch) + (uri (cran-uri "rpf" version)) + (sha256 + (base32 + "1vgqhwi676bi9jjxljnxblw65b5szjwbp87wnsabc11vfjzc9wki")))) + (properties `((upstream-name . "rpf"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mvtnorm" ,r-mvtnorm) + ("r-rcppeigen" ,r-rcppeigen))) + (home-page "https://github.com/jpritikin/rpf") + (synopsis "Response probability functions") + (description + "The purpose of this package is to factor out logic and math common to +Item Factor Analysis fitting, diagnostics, and analysis. It is envisioned as +core support code suitable for more specialized IRT packages to build upon. +Complete access to optimized C functions are made available with +@code{R_RegisterCCallable()}.") + (license license:gpl3+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0022-gnu-Add-package-r-openmx.patch" >From b7a15fc07667c90b1c7dde9a119dfab192715cb4 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:09:42 +0100 Subject: [v2 22/34] gnu: Add package r-openmx * gnu/packages/cran.scm (r-openmx): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3934f2085f..310089e81f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19854,3 +19854,36 @@ core support code suitable for more specialized IRT packages to build upon. Complete access to optimized C functions are made available with @code{R_RegisterCCallable()}.") (license license:gpl3+))) + +(define-public r-openmx + (package + (name "r-openmx") + (version "2.15.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "OpenMx" version)) + (sha256 + (base32 + "1wbzhmyb1lnk39dkcyccmblxvniwsghh0jd94x05pk6yrcq8im5v")))) + (properties `((upstream-name . "OpenMx"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-digest" ,r-digest) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rpf" ,r-rpf) + ("r-stanheaders" ,r-stanheaders))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://openmx.ssri.psu.edu") + (synopsis + "Extended structural equation modelling") + (description + "Allows estimation of a wide variety of advanced multivariate statistical +models and consists of a library of functions and optimizers that allow you to +quickly and flexibly define an SEM model and estimate parameters given observed +data.") + (license license:asl2.0))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0023-gnu-Add-package-r-kutils.patch" >From 5576d64e965947d1ec0d4bebc7aef84ea4e35f16 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:10:25 +0100 Subject: [v2 23/34] gnu: Add package r-kutils * gnu/packages/cran.scm (r-kutils): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 310089e81f..8cab74e4b1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19887,3 +19887,36 @@ models and consists of a library of functions and optimizers that allow you to quickly and flexibly define an SEM model and estimate parameters given observed data.") (license license:asl2.0))) + +(define-public r-kutils + (package + (name "r-kutils") + (version "1.69") + (source + (origin + (method url-fetch) + (uri (cran-uri "kutils" version)) + (sha256 + (base32 + "12pg26a85h0jxlfcyai68dbh4bq1gnq8v1ngi8k9qvafbrpc6gx8")))) + (properties `((upstream-name . "kutils"))) + (build-system r-build-system) + (propagated-inputs + `(("r-foreign" ,r-foreign) + ("r-lavaan" ,r-lavaan) + ("r-openxlsx" ,r-openxlsx) + ("r-plyr" ,r-plyr) + ("r-runit" ,r-runit) + ("r-xtable" ,r-xtable))) + (home-page + "https://cran.r-project.org/package=kutils") + (synopsis "Project management tools") + (description + "Tools for data importation, recoding, and inspection that are used at +the University of Kansas Center for Research Methods and Data Analysis. There +are functions to create new project folders, R code templates, create uniquely +named output directories, and to quickly obtain a visual summary for each +variable in a data frame. The main feature here is the systematic +implementation of the \"variable key\" framework for data importation and +recoding.") + (license license:gpl2))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0024-gnu-Add-package-r-rockchalk.patch" >From 802caedbebe1d3985bed5a40acdf5b76d91ad68f Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:10:55 +0100 Subject: [v2 24/34] gnu: Add package r-rockchalk * gnu/packages/cran.scm (r-rockchalk): New variable. --- gnu/packages/cran.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8cab74e4b1..1ccc237bf1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19920,3 +19920,37 @@ variable in a data frame. The main feature here is the systematic implementation of the \"variable key\" framework for data importation and recoding.") (license license:gpl2))) + +(define-public r-rockchalk + (package + (name "r-rockchalk") + (version "1.8.144") + (source + (origin + (method url-fetch) + (uri (cran-uri "rockchalk" version)) + (sha256 + (base32 + "07dp1n155b9gfvk8l30h6bhjbhbylsjxfzns08mryn4mxj3nqpnb")))) + (properties `((upstream-name . "rockchalk"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cardata" ,r-cardata) + ("r-kutils" ,r-kutils) + ("r-lme4" ,r-lme4) + ("r-mass" ,r-mass))) + (home-page + "https://cran.r-project.org/package=rockchalk") + (synopsis + "Regression estimation and presentation") + (description + "This package provides a collection of functions for interpretation and +presentation of regression analysis. These functions are used to produce the +statistics lectures in @url{http://pj.freefaculty.org/guides}. Includes +regression diagnostics, regression tables, and plots of interactions and +\"moderator\" variables. The emphasis is on \"mean-centered\" and +\"residual-centered\" predictors. The vignette @code{rockchalk} offers a +fairly comprehensive overview. The vignette @code{Rstyle} has advice about +coding in R. The package title @code{rockchalk} refers to our school motto, +\"Rock Chalk Jayhawk, Go K.U.\".") + (license license:gpl3+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0025-gnu-Add-package-r-lisreltor.patch" >From 669dbf6dc52cd6349262234625f5b02a3bc4ae60 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:11:25 +0100 Subject: [v2 25/34] gnu: Add package r-lisreltor * gnu/packages/cran.scm (r-lisreltor): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1ccc237bf1..55966d09aa 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19954,3 +19954,25 @@ fairly comprehensive overview. The vignette @code{Rstyle} has advice about coding in R. The package title @code{rockchalk} refers to our school motto, \"Rock Chalk Jayhawk, Go K.U.\".") (license license:gpl3+))) + +(define-public r-lisreltor + (package + (name "r-lisreltor") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "lisrelToR" version)) + (sha256 + (base32 + "0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5")))) + (properties `((upstream-name . "lisrelToR"))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/package=lisrelToR") + (synopsis "Import output from LISREL into R") + (description + "This is an unofficial package aimed at automating the import of LISREL +output in R. This package or its maintainer is not in any way affiliated with +the creators of LISREL and SSI, Inc.") + (license license:gpl2))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0026-gnu-Add-package-r-bdgraph.patch" >From c320b8ca61babc8f09484e81e5c3965ed4001913 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:11:51 +0100 Subject: [v2 26/34] gnu: Add package r-bdgraph * gnu/packages/cran.scm (r-bdgraph): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 55966d09aa..bb958bb577 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19976,3 +19976,29 @@ coding in R. The package title @code{rockchalk} refers to our school motto, output in R. This package or its maintainer is not in any way affiliated with the creators of LISREL and SSI, Inc.") (license license:gpl2))) + +(define-public r-bdgraph + (package + (name "r-bdgraph") + (version "2.62") + (source + (origin + (method url-fetch) + (uri (cran-uri "BDgraph" version)) + (sha256 + (base32 + "1b1vfar940swvn3pcil848qsp8ji50fjjll8jjzp6y2adx0f8pby")))) + (properties `((upstream-name . "BDgraph"))) + (build-system r-build-system) + (propagated-inputs `(("r-igraph" ,r-igraph))) + (home-page + "https://www.uva.nl/profile/a.mohammadi") + (synopsis + "Bayesian structure learning in graphical models using birth-death MCMC") + (description + "Statistical tools for Bayesian structure learning in undirected +graphical models for continuous, discrete, and mixed data. The package is +implemented the recent improvements in the Bayesian graphical models +literature, including Mohammadi and Wit (2015) @url{doi:10.1214/14-BA889}, +Mohammadi and Wit (2019) @url{doi:10.18637/jss.v089.i03}.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0027-gnu-Add-package-r-ggm.patch" >From c37a7e8bcf31161c4b70ea1ff0a134e8140910a8 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:12:19 +0100 Subject: [v2 27/34] gnu: Add package r-ggm * gnu/packages/cran.scm (r-ggm): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bb958bb577..47af203fa6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20002,3 +20002,26 @@ implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) @url{doi:10.1214/14-BA889}, Mohammadi and Wit (2019) @url{doi:10.18637/jss.v089.i03}.") (license license:gpl2+))) + +(define-public r-ggm + (package + (name "r-ggm") + (version "2.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggm" version)) + (sha256 + (base32 + "1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3")))) + (properties `((upstream-name . "ggm"))) + (build-system r-build-system) + (propagated-inputs `(("r-igraph" ,r-igraph))) + (home-page + "https://cran.r-project.org/package=ggm") + (synopsis + "Functions for graphical Markov models") + (description + "This package provides functions and datasets for maximum likelihood +fitting of some classes of graphical Markov models.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0028-gnu-Add-package-r-d3network.patch" >From f013c408268628aec67b63998bfe78d91d022a5e Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:12:49 +0100 Subject: [v2 28/34] gnu: Add package r-d3network * gnu/packages/cran.scm (r-d3network): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 47af203fa6..02742e8e74 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20025,3 +20025,29 @@ Mohammadi and Wit (2019) @url{doi:10.18637/jss.v089.i03}.") "This package provides functions and datasets for maximum likelihood fitting of some classes of graphical Markov models.") (license license:gpl2+))) + +(define-public r-d3network + (package + (name "r-d3network") + (version "0.5.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "d3Network" version)) + (sha256 + (base32 + "1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw")))) + (properties `((upstream-name . "d3Network"))) + (build-system r-build-system) + (propagated-inputs + `(("r-plyr" ,r-plyr) + ("r-rjson" ,r-rjson) + ("r-whisker" ,r-whisker))) + (home-page + "http://christophergandrud.github.io/d3Network/") + (synopsis + "Create D3 JavaScript network, tree, dendrogram, and Sankey graphs") + (description + "This packages is intended to make it easy to create D3 JavaScript +network, tree, dendrogram, and Sankey graphs from R using data frames.") + (license license:gpl3+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0029-gnu-Add-package-r-qgraph.patch" >From aff4464330ba8f983e332b1ee6d17ef1caf9594f Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:15:00 +0100 Subject: [v2 29/34] gnu: Add package r-qgraph * gnu/packages/cran.scm (r-qgraph): New variable. --- gnu/packages/cran.scm | 49 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 49 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 02742e8e74..d251278d0c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20051,3 +20051,52 @@ fitting of some classes of graphical Markov models.") "This packages is intended to make it easy to create D3 JavaScript network, tree, dendrogram, and Sankey graphs from R using data frames.") (license license:gpl3+))) + +(define-public r-qgraph + (package + (name "r-qgraph") + (version "1.6.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "qgraph" version)) + (sha256 + (base32 + "1glg814h7fwl1jfm6dw1d9i80bilmj5jcjjrfln15byrdh4mm1j3")))) + (properties `((upstream-name . "qgraph"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-bdgraph" ,r-bdgraph) + ("r-colorspace" ,r-colorspace) + ("r-corpcor" ,r-corpcor) + ("r-d3network" ,r-d3network) + ("r-dplyr" ,r-dplyr) + ("r-fdrtool" ,r-fdrtool) + ("r-ggm" ,r-ggm) + ("r-ggplot2" ,r-ggplot2) + ("r-ggraph" ,r-ggraph) + ("r-glasso" ,r-glasso) + ("r-gtools" ,r-gtools) + ("r-hmisc" ,r-hmisc) + ("r-huge" ,r-huge) + ("r-igraph" ,r-igraph) + ("r-jpeg" ,r-jpeg) + ("r-lavaan" ,r-lavaan) + ("r-matrix" ,r-matrix) + ("r-pbapply" ,r-pbapply) + ("r-plyr" ,r-plyr) + ("r-png" ,r-png) + ("r-psych" ,r-psych) + ("r-rcpp" ,r-rcpp) + ("r-reshape2" ,r-reshape2) + ("r-tidygraph" ,r-tidygraph))) + (home-page "http://sachaepskamp.com/qgraph/") + (synopsis + "Graph plotting methods, psychometric data visualization and graphical +model estimation") + (description + "Weighted network visualization and analysis, as well as Gaussian +graphical model computation. See Epskamp et al. (2012) +@url{doi:10.18637/jss.v048.i04}.") + (license license:gpl2))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0030-gnu-Add-package-r-semplot.patch" >From 4ae37e50fa2214c44d9c7cc48500ac009a0f8d91 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:15:25 +0100 Subject: [v2 30/34] gnu: Add package r-semplot * gnu/packages/cran.scm (r-semplot): New variable. --- gnu/packages/cran.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d251278d0c..1e09579cb6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20100,3 +20100,37 @@ model estimation") graphical model computation. See Epskamp et al. (2012) @url{doi:10.18637/jss.v048.i04}.") (license license:gpl2))) + +(define-public r-semplot + (package + (name "r-semplot") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "semPlot" version)) + (sha256 + (base32 + "0l1v9yi1pv59iwfknw4dh9qskk5y8r347jq1vq13gnfd3bmd71xr")))) + (properties `((upstream-name . "semPlot"))) + (build-system r-build-system) + (propagated-inputs + `(("r-colorspace" ,r-colorspace) + ("r-corpcor" ,r-corpcor) + ("r-igraph" ,r-igraph) + ("r-lavaan" ,r-lavaan) + ("r-lisreltor" ,r-lisreltor) + ("r-openmx" ,r-openmx) + ("r-plyr" ,r-plyr) + ("r-qgraph" ,r-qgraph) + ("r-regsem" ,r-regsem) + ("r-rockchalk" ,r-rockchalk) + ("r-sem" ,r-sem) + ("r-xml" ,r-xml))) + (home-page + "https://github.com/SachaEpskamp/semPlot") + (synopsis + "Path diagrams and visual analysis of various SEM packages' output") + (description + "Path diagrams and visual analysis of various SEM packages' output.") + (license license:gpl2))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0031-gnu-Add-package-r-cdm.patch" >From c176ff89ec75e2d0d201f3815fcfbf9956481168 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:15:51 +0100 Subject: [v2 31/34] gnu: Add package r-cdm * gnu/packages/cran.scm (r-cdm): New variable. --- gnu/packages/cran.scm | 39 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1e09579cb6..62a9dede4e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20134,3 +20134,42 @@ graphical model computation. See Epskamp et al. (2012) (description "Path diagrams and visual analysis of various SEM packages' output.") (license license:gpl2))) + +(define-public r-cdm + (package + (name "r-cdm") + (version "7.4-19") + (source + (origin + (method url-fetch) + (uri (cran-uri "CDM" version)) + (sha256 + (base32 + "1ln1r3rk004fmk55iy08bjh3vv4wnkb8zg2wj3r9rq7pi8jn8fv4")))) + (properties `((upstream-name . "CDM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mvtnorm" ,r-mvtnorm) + ("r-polycor" ,r-polycor) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page + "https://github.com/alexanderrobitzsch/CDM") + (synopsis "Cognitive diagnosis modeling") + (description + "Functions for cognitive diagnosis modeling and multidimensional item +response modeling for dichotomous and polytomous item responses. This package +enables the estimation of the DINA and DINO model (Junker & Sijtsma, 2001, +@url{doi:10.1177/01466210122032064}), the multiple group (polytomous) GDINA +model (de la Torre, 2011, @url{doi:10.1007/s11336-011-9207-7}), the multiple +choice DINA model (de la Torre, 2009, @url{doi:10.1177/0146621608320523}), the +general diagnostic model (GDM; von Davier, 2008, +@url{doi:10.1348/000711007X193957}), the structured latent class model (SLCA; +Formann, 1992, @url{doi:10.1080/01621459.1992.10475229}) and regularized latent +class analysis (Chen, Li, Liu, & Ying, 2017, +@url{doi:10.1007/s11336-016-9545-6}). See George, Robitzsch, Kiefer, Gross, +and Uenlue (2017) @url{doi:10.18637/jss.v074.i02} for further details on +estimation and the package structure. For tutorials on how to use the CDM +package see George and Robitzsch (2015, @url{doi:10.20982/tqmp.11.3.p189}) as +well as Ravand and Robitzsch (2015).") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0032-gnu-Add-package-r-tam.patch" >From deaccf8b2cafa67804a050d7b8c5b43fc058f13e Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:16:30 +0100 Subject: [v2 32/34] gnu: Add package r-tam * gnu/packages/cran.scm (r-tam): New variable. --- gnu/packages/cran.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 62a9dede4e..195c6b801e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20173,3 +20173,37 @@ estimation and the package structure. For tutorials on how to use the CDM package see George and Robitzsch (2015, @url{doi:10.20982/tqmp.11.3.p189}) as well as Ravand and Robitzsch (2015).") (license license:gpl2+))) + +(define-public r-tam + (package + (name "r-tam") + (version "3.3-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "TAM" version)) + (sha256 + (base32 + "1rkjp5x6wrk1dfspp1imvfals0wvy4w1wb8a5mhfbnilc7vgnlbq")))) + (properties `((upstream-name . "TAM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cdm" ,r-cdm) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page + "http://www.edmeasurementsurveys.com/TAM/Tutorials/") + (synopsis "Test analysis modules") + (description + "Includes marginal maximum likelihood estimation and joint maximum +likelihood estimation for unidimensional and multidimensional item response +models. The package functionality covers the Rasch model, 2PL model, 3PL +model, generalized partial credit model, multi-faceted Rasch model, nominal +item response model, structured latent class model, mixture distribution IRT +models, and located latent class models. Latent regression models and +plausible value imputation are also supported. For details see Adams, Wilson +and Wang, 1997 @url{doi:10.1177/0146621697211001}, Adams, Wilson and Wu, 1997 +@url{doi:10.3102/10769986022001047}, Formann, 1982 +@url{doi:10.1002/bimj.4710240209}, Formann, 1992 +@url{doi:10.1080/01621459.1992.10475229}.") + (license license:gpl2+))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0033-gnu-Add-package-r-erm.patch" >From ee59209affbdab125ff40770482e56689086a3e7 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:16:57 +0100 Subject: [v2 33/34] gnu: Add package r-erm * gnu/packages/cran.scm (r-erm): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 195c6b801e..43ce04f826 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20207,3 +20207,36 @@ and Wang, 1997 @url{doi:10.1177/0146621697211001}, Adams, Wilson and Wu, 1997 @url{doi:10.1002/bimj.4710240209}, Formann, 1992 @url{doi:10.1080/01621459.1992.10475229}.") (license license:gpl2+))) + +(define-public r-erm + (package + (name "r-erm") + (version "1.0-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "eRm" version)) + (sha256 + (base32 + "11p8j61arq1ih2qi33wf0442vcdbp3zvknzm5aknsifwl4mbzzly")))) + (properties `((upstream-name . "eRm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lattice" ,r-lattice) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page + "https://cran.r-project.org/package=eRm") + (synopsis "Extended Rasch modeling") + (description + "Fits @dfn{Rasch models} (RM), @dfn{linear logistic test models} (LLTM), +@dfn{rating scale model} (RSM), @dfn{linear rating scale models} (LRSM), +@dfn{partial credit models} (PCM), and @dfn{linear partial credit models} +(LPCM). Missing values are allowed in the data matrix. Additional features +are the ML estimation of the person parameters, Andersen's LR-test, +item-specific Wald test, Martin-Loef-Test, nonparametric Monte-Carlo Tests, +itemfit and personfit statistics including infit and outfit measures, ICC and +other plots, automated stepwise item elimination, simulation module for various +binary data matrices.") + (license license:gpl3))) -- 2.20.1 --EP0wieDxd4TSJjHq Content-Type: text/x-diff; charset=us-ascii Content-Disposition: attachment; filename="0034-gnu-Add-package-r-irtoys.patch" >From e8683cb87a54b57d857689466809dd87ba7ef2d9 Mon Sep 17 00:00:00 2001 From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:17:17 +0100 Subject: [v2 34/34] gnu: Add package r-irtoys * gnu/packages/cran.scm (r-irtoys): New variable. --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 43ce04f826..5d06b8d452 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -20240,3 +20240,35 @@ itemfit and personfit statistics including infit and outfit measures, ICC and other plots, automated stepwise item elimination, simulation module for various binary data matrices.") (license license:gpl3))) + +(define-public r-irtoys + (package + (name "r-irtoys") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "irtoys" version)) + (sha256 + (base32 + "0h6iiaxikhbxhbyksbjnb09qdxinlkwr2v9yzs5wslbni14paq5q")))) + (properties `((upstream-name . "irtoys"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ltm" ,r-ltm) ("r-sm" ,r-sm))) + (home-page + "https://cran.r-project.org/package=irtoys") + (synopsis + "Collection of functions related to Item Response Theory (IRT)") + (description + "This package provides a collection of functions useful in learning and +practicing IRT, which can be combined into larger programs. Provides basic CTT +analysis, a simple common interface to the estimation of item parameters in IRT +models for binary responses with three different programs (ICL, BILOG-MG, and +ltm), ability estimation (MLE, BME, EAP, WLE, plausible values), item and +person fit statistics, scaling methods (MM, MS, Stocking-Lord, and the complete +Hebaera method), and a rich array of parametric and non-parametric (kernel) +plots. Estimates and plots Haberman's interaction model when all items are +dichotomously scored.") + (license license:gpl2+))) + -- 2.20.1 --EP0wieDxd4TSJjHq-- From debbugs-submit-bounces@debbugs.gnu.org Sat Feb 22 14:49:32 2020 Received: (at 39416-done) by debbugs.gnu.org; 22 Feb 2020 19:49:32 +0000 Received: from localhost ([127.0.0.1]:50019 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1j5amK-0000y1-Ey for submit@debbugs.gnu.org; Sat, 22 Feb 2020 14:49:32 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21168) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1j5amH-0000xn-4v for 39416-done@debbugs.gnu.org; Sat, 22 Feb 2020 14:49:31 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1582400964; cv=none; d=zohomail.com; s=zohoarc; b=OIgmDHPQtGxPlflFzyuyGu0u0ntvPkNmkhdyel2v6CS+nCl4V2S4VNOtK2XHqj/qo1mfLozCHpAzTZoEeDwWYvcdzoyxCjJ0hJmSAMwnxxVQcaY8YM7fXwyYtclYgJJIqt5aWrj1XuxFvNY/OyeVNlbWeOhkDAZTCH67bpPxLdA= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1582400964; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=v5w28jnWD49bG+/EyRCfEy9ddxAH5cR8lLDGqkfjRLM=; b=S12ZkskOi8bp5l6HH7t3BU6Xt9cVG1qzliG4c+DyARbNub08oGVvIVytlA6rAjpuKGYgtb2Z01nifvwavOyIZkPm8eavLYhzbyWNJKwkuG3JelkaCWSpFtuh2EdhdLTTC3RTaoqiNxbumYZqf3JhsN4gVfxuMj+MlY++bTOAWBg= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1582400964; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=v5w28jnWD49bG+/EyRCfEy9ddxAH5cR8lLDGqkfjRLM=; b=b8nabtOXfVeYM5c002L54QugX3mr5ltPQTTcL1BjPJlgYGwaNe8nTU3SUXbV8zpQ nx51fdeoghIP0iPg9JwqvSb5xhueFGgWZaIPviXwl0LX1/ZvWWLtG7AI18ljqcqOK3e DHDlL4Tw0IvqPZvhkxAp3+t5gH37icqlPV8CIIwU= Received: from localhost (p4FD5AA65.dip0.t-ipconnect.de [79.213.170.101]) by mx.zohomail.com with SMTPS id 1582400962371802.8620891203539; Sat, 22 Feb 2020 11:49:22 -0800 (PST) References: <20200204135451.GG2917@zpidnp36> <87v9omqrc4.fsf@elephly.net> <20200206135252.GM2917@zpidnp36> User-agent: mu4e 1.2.0; emacs 26.3 From: Ricardo Wurmus To: Lars-Dominik Braun Subject: Re: [bug#39416] Bulk import of R packages In-reply-to: <20200206135252.GM2917@zpidnp36> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Sat, 22 Feb 2020 20:49:18 +0100 Message-ID: <874kvil7wh.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 39416-done Cc: 39416-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Lars, >> Could you please also do the following: >> >> * modify the description to contain only complete sentences >> * adjust the letter case in the synopsis (CRAN uppercases all initials) >> * adjust the indentation with etc/indent-code.el >> * use @dfn{Some Long Term} (SLT) in descriptions where necessary >> * wrap URLs in the description in Texinfo syntax (especially all the >> things. > done, I hope I did not miss anything. Thank you for the updated patches. I=E2=80=99ve just pushed variants of the= se patches. There were still quite a few things to change, which is why this took me so long. One of the problems was that the descriptions often included incomplete sentence fragments. -- Ricardo From unknown Fri Jun 13 10:44:13 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sun, 22 Mar 2020 11:24:04 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator