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Thu, 19 Dec 2019 20:20:16 +0100 (CET) Received: from SW-IT-P-CAS4.mdc-berlin.net (mgw10-4.mdc-berlin.de [141.80.113.59]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 19 Dec 2019 20:20:16 +0100 (CET) Received: from [141.80.113.108] (141.80.113.108) by SW-IT-P-CAS4.mdc-berlin.net (141.80.113.59) with Microsoft SMTP Server (TLS) id 14.3.468.0; Thu, 19 Dec 2019 20:20:15 +0100 To: From: mpatras Message-ID: <5bda0f11-1af4-0e9e-273f-325a36332126@mdc-berlin.de> Date: Thu, 19 Dec 2019 20:20:15 +0100 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:68.0) Gecko/20100101 Thunderbird/68.2.2 MIME-Version: 1.0 Content-Type: text/plain; charset="utf-8"; format=flowed Content-Language: en-US X-Originating-IP: [141.80.113.108] X-TM-AS-Product-Ver: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-AS-Result: No-1.352500-8.000000-10 X-TMASE-MatchedRID: GaP57vPtnWgl08/xxlO+L5PQTDqTymbSL60/awpuq4h7lDzh8Z+Ehs48 74k0JUprIfqPF9C+GOjMdS7HrUtSKJg39Rgsjteo585VzGMOFzAaTOa7uOFmI9AtbEEX0MxBAB5 fZ54AVbsqtq5d3cxkNRqXnrxrKCOX3rRWHXbuL9/rJZzWVJNoZQ8bTDcKz9rGV7MeTQVvw2aCDO m1rnoaWhEfOUfSfVq2msB42YsUbCEeF5LlwpQcnijLmqRM9sY4QwymtxuJ6y0= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-1.352500-8.000000 X-TMASE-Version: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-SNTS-SMTP: 449FE0970749A24915F2E87401E06D21DF643FEA2E7413B864BEF79AD9C27EF82000:9 Content-Transfer-Encoding: quoted-printable X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] [fuzzy] X-Received-From: 194.95.234.172 X-Spam-Score: 0.6 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.4 (/) --=20 M=C4=83d=C4=83lin Ionel Patra=C8=99cu System Administrator Bioinformatics and Omics Data Science The Berlin Institute for Medical Systems Biology (BIMSB) Max Delbr=C3=BCck Center (MDC) Hannoversche Str. 28, 10115 Berlin House 101, room 1.60 From debbugs-submit-bounces@debbugs.gnu.org Thu Dec 19 14:24:28 2019 Received: (at 38676) by debbugs.gnu.org; 19 Dec 2019 19:24:28 +0000 Received: from localhost ([127.0.0.1]:45539 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ii1PQ-0001RG-2G for submit@debbugs.gnu.org; Thu, 19 Dec 2019 14:24:28 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:39323) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ii1PO-0001R6-8E for 38676@debbugs.gnu.org; Thu, 19 Dec 2019 14:24:26 -0500 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 3650AA00A2 for <38676@debbugs.gnu.org>; Thu, 19 Dec 2019 20:24:24 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1576783463; x=1578597864; bh=Q1bkfFCT+jOI/OG3mlqteh2uosiHgRj8qJmJAER1wxE=; b=LvQqBG/CZzaJ WlHf+B3zj/KL2kYB3z5rrC4Gbdw/bJ/U6nGX9nk3Qdeu7fJ14Qja+YYtxGnSdqyJ Zr9/ooYQXRhQj+vbZDBMkfPeykRimsEGHn2aUHUPwMmzFACFIl3HYH1MPNsjwZhb kCm35XaQsg5XQ4jYgfpKZ9dcLKYZqys= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id o4a397I9lnmw for <38676@debbugs.gnu.org>; Thu, 19 Dec 2019 20:24:23 +0100 (CET) Received: from SW-IT-P-CAS4.mdc-berlin.net (mgw10-4.mdc-berlin.de [141.80.113.59]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for <38676@debbugs.gnu.org>; Thu, 19 Dec 2019 20:24:23 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-CAS4.mdc-berlin.net (141.80.113.59) with Microsoft SMTP Server (TLS) id 14.3.468.0; Thu, 19 Dec 2019 20:24:22 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <38676@debbugs.gnu.org> Subject: [PATCH 1/2] gnu: libgtextutils: Build with GCC 5 Date: Thu, 19 Dec 2019 20:24:08 +0100 Message-ID: <20191219192409.16812-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.24.1 MIME-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 8bit X-Originating-IP: [141.80.113.106] X-TM-AS-Product-Ver: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-AS-Result: No-6.128100-8.000000-10 X-TMASE-MatchedRID: GJCFli0Pq7nsqBPQL1gf426HurDH4PpPS1zwNuiBtITfUZT83lbkECMA GeUnRtvaL68Fzj80DCdPVdQTub7xRKheHRKIaMTMbBMSu4v05tOiH9ZXzU+2Yh1j1N5bmwJn75T 4BPuNkdr5GsB8aEHR3y2+lyx46iL0+5T6zKmlZhdV1zhVw8duYuuLFZZYlisfv1l2Uvx6idoLbi gRnpKlKTpcQTtiHDgWKJ2Bu+FL9LGh5l4ytH21mpi8Cr9luzfPb2aEATc/R+ztTpBx3EL62w== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.128100-8.000000 X-TMASE-Version: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-SNTS-SMTP: AC083FE0A861E6D5054CE8814936AD7337EBD89CC54E482B5598324A69C114F02000:9 X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 38676 Cc: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/textutils.scm (libgtextutils)[native-inputs]: Add gcc-5. --- gnu/packages/textutils.scm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm index 668260b7d8..cf90779978 100644 --- a/gnu/packages/textutils.scm +++ b/gnu/packages/textutils.scm @@ -17,6 +17,7 @@ ;;; Copyright © 2018 Pierre Neidhardt ;;; Copyright © 2018 Meiyo Peng ;;; Copyright © 2019 Yoshinori Arai +;;; Copyright © 2019 Mădălin Ionel Patrașcu ;;; ;;; This file is part of GNU Guix. ;;; @@ -47,6 +48,7 @@ #:use-module (gnu packages autotools) #:use-module (gnu packages base) #:use-module (gnu packages compression) + #:use-module (gnu packages gcc) #:use-module (gnu packages gettext) #:use-module (gnu packages java) #:use-module (gnu packages ncurses) @@ -232,6 +234,7 @@ nested include statements).") (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) + ("gcc" ,gcc-5) ;; doesn't build with later versions ("libtool" ,libtool))) (home-page "https://github.com/agordon/libgtextutils") (synopsis "Gordon's text utils library") -- 2.24.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Dec 19 14:24:42 2019 Received: (at 38676) by debbugs.gnu.org; 19 Dec 2019 19:24:42 +0000 Received: from localhost ([127.0.0.1]:45542 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ii1Pe-0001Rh-C2 for submit@debbugs.gnu.org; Thu, 19 Dec 2019 14:24:42 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:55699) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ii1Pc-0001RX-08 for 38676@debbugs.gnu.org; Thu, 19 Dec 2019 14:24:40 -0500 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id A7A2C160095 for <38676@debbugs.gnu.org>; Thu, 19 Dec 2019 20:24:38 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1576783478; x=1578597879; bh=MAUlZzH3VYNmTLT8X9781PzIyOGmkAMt6Qa astxW+b8=; b=KzgrDtdgnQhAhtXuc3iNfk+9iaCodZwvSHv1qhsCMYa9EtBgMGY /bGlr9DZ6anBBOh2XnGfwZd3Jyu7n6VYCsIRN2jaLqdtAINkBdSzXSjEG40m/eP0 caY1PmaOOkWnA/XRj381GlsONzYwWIzchrw1j7BwHcFR2+ExqDx7AhPc= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id nrlm7aFiPv2V for <38676@debbugs.gnu.org>; Thu, 19 Dec 2019 20:24:38 +0100 (CET) Received: from SW-IT-P-CAS4.mdc-berlin.net (mgw10-4.mdc-berlin.de [141.80.113.59]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for <38676@debbugs.gnu.org>; Thu, 19 Dec 2019 20:24:38 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-CAS4.mdc-berlin.net (141.80.113.59) with Microsoft SMTP Server (TLS) id 14.3.468.0; Thu, 19 Dec 2019 20:24:34 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <38676@debbugs.gnu.org> Subject: [PATCH 2/2] gnu: fastx-toolkit: Build with GCC 6 Date: Thu, 19 Dec 2019 20:24:09 +0100 Message-ID: <20191219192409.16812-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.24.1 In-Reply-To: <20191219192409.16812-1-madalinionel.patrascu@mdc-berlin.de> References: <20191219192409.16812-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-TM-AS-Product-Ver: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-AS-Result: No-2.695000-8.000000-10 X-TMASE-MatchedRID: OVezK//6BMrKBI6o17vfgtqQ6Du6Gk+zNV9S7O+u3KZYwVHjLI3nekAc 6DyoS2rIrXMOxnDE+MR1bKewKpB/rcQeKtf4WPRzTT9ZveSPAxVr9+Kgn2XgePj/xqm3b+MoDhb Suebtmdl9LQinZ4QefCP/VFuTOXUTG8/0CISn+KC25maLCP+Wct0H8LFZNFG7doMssNsUwYVptO g0kshUWLodxUWrFXNYHQvlXATMFrICjSqYVX0wOoH3IAK1rnuftqfJXN2af/pqyjIZ0RDpq8S1+ C09V7Z6LUaQ15RP7HhcKRK3DM/KmiQGdl1tQI7t0/5HQxvVB1U0+aGhUx8J2mlvyA1GNPX1 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.695000-8.000000 X-TMASE-Version: SMEX-12.5.0.1684-8.5.1010-25114.002 X-TM-SNTS-SMTP: 119D7AC00EC108E96FCB7EE37DC713227E326E7446AB15A72142659943EEDA432000:9 X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 38676 Cc: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioinformatics.scm (fastx-toolkit)[native-inputs]: Add gcc-6. --- gnu/packages/bioinformatics.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 528b603476..27ff70b1fb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2995,7 +2995,8 @@ reasonable amount of time and memory. For large alignments, FastTree is (inputs `(("libgtextutils" ,libgtextutils))) (native-inputs - `(("pkg-config" ,pkg-config))) + `(("gcc" ,gcc-6) ;; doesn't build with later versions + ("pkg-config" ,pkg-config))) (home-page "http://hannonlab.cshl.edu/fastx_toolkit/") (synopsis "Tools for FASTA/FASTQ file preprocessing") (description -- 2.24.1 From debbugs-submit-bounces@debbugs.gnu.org Sat Dec 21 17:54:10 2019 Received: (at 38676-done) by debbugs.gnu.org; 21 Dec 2019 22:54:10 +0000 Received: from localhost ([127.0.0.1]:48887 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iindS-0002QY-1E for submit@debbugs.gnu.org; Sat, 21 Dec 2019 17:54:10 -0500 Received: from eggs.gnu.org ([209.51.188.92]:55696) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iindP-0002QJ-Il for 38676-done@debbugs.gnu.org; Sat, 21 Dec 2019 17:54:09 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]:35766) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1iindH-00041o-Ek; Sat, 21 Dec 2019 17:53:59 -0500 Received: from [2a01:e0a:1d:7270:af76:b9b:ca24:c465] (port=33210 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1iindH-0007uw-19; Sat, 21 Dec 2019 17:53:59 -0500 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#38676] [PATCH 1/2] gnu: libgtextutils: Build with GCC 5 References: <5bda0f11-1af4-0e9e-273f-325a36332126@mdc-berlin.de> <20191219192409.16812-1-madalinionel.patrascu@mdc-berlin.de> Date: Sat, 21 Dec 2019 23:53:55 +0100 In-Reply-To: <20191219192409.16812-1-madalinionel.patrascu@mdc-berlin.de> (=?utf-8?B?Ik3Eg2TEg2xpbg==?= Ionel =?utf-8?Q?Patra=C8=99cu=22's?= message of "Thu, 19 Dec 2019 20:24:08 +0100") Message-ID: <87fthdmgsc.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.3 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 38676-done Cc: 38676-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hello M=C4=83d=C4=83lin, M=C4=83d=C4=83lin Ionel Patra=C8=99cu = skribis: > * gnu/packages/textutils.scm (libgtextutils)[native-inputs]: Add gcc-5. [...] > * gnu/packages/bioinformatics.scm (fastx-toolkit)[native-inputs]: Add gcc= -6. Applied both, thank you! Ludo=E2=80=99. From unknown Fri Aug 15 15:56:03 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sun, 19 Jan 2020 12:24:05 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator