GNU bug report logs - #38676
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: mpatras <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Date: Thu, 19 Dec 2019 20:20:15 +0100

-- 
Mădălin Ionel Patrașcu

System Administrator
Bioinformatics and Omics Data Science
The Berlin Institute for Medical Systems Biology (BIMSB)
Max Delbrück Center (MDC)
Hannoversche Str. 28, 10115 Berlin
House 101, room 1.60

Message #8 received at 38676 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <38676 <at> debbugs.gnu.org>
Cc: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH 1/2] gnu: libgtextutils: Build with GCC 5
Date: Thu, 19 Dec 2019 20:24:08 +0100

* gnu/packages/textutils.scm (libgtextutils)[native-inputs]: Add gcc-5.
---
 gnu/packages/textutils.scm | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index 668260b7d8..cf90779978 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -17,6 +17,7 @@
 ;;; Copyright © 2018 Pierre Neidhardt <mail <at> ambrevar.xyz>
 ;;; Copyright © 2018 Meiyo Peng <meiyo.peng <at> gmail.com>
 ;;; Copyright © 2019 Yoshinori Arai <kumagusu08 <at> gmail.com>
+;;; Copyright © 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -47,6 +48,7 @@
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages gcc)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages java)
   #:use-module (gnu packages ncurses)
@@ -232,6 +234,7 @@ nested include statements).")
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)
+       ("gcc" ,gcc-5) ;; doesn't build with later versions
        ("libtool" ,libtool)))
     (home-page "https://github.com/agordon/libgtextutils")
     (synopsis "Gordon's text utils library")
-- 
2.24.1

Message #11 received at 38676 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <38676 <at> debbugs.gnu.org>
Cc: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH 2/2] gnu: fastx-toolkit: Build with GCC 6
Date: Thu, 19 Dec 2019 20:24:09 +0100

* gnu/packages/bioinformatics.scm (fastx-toolkit)[native-inputs]: Add gcc-6.
---
 gnu/packages/bioinformatics.scm | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 528b603476..27ff70b1fb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2995,7 +2995,8 @@ reasonable amount of time and memory.  For large alignments, FastTree is
     (inputs
      `(("libgtextutils" ,libgtextutils)))
     (native-inputs
-     `(("pkg-config" ,pkg-config)))
+     `(("gcc" ,gcc-6) ;; doesn't build with later versions
+       ("pkg-config" ,pkg-config)))
     (home-page "http://hannonlab.cshl.edu/fastx_toolkit/")
     (synopsis "Tools for FASTA/FASTQ file preprocessing")
     (description
-- 
2.24.1

Message #16 received at 38676-done <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 38676-done <at> debbugs.gnu.org
Subject: Re: [bug#38676] [PATCH 1/2] gnu: libgtextutils: Build with GCC 5
Date: Sat, 21 Dec 2019 23:53:55 +0100

Hello Mădălin,

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> skribis:

> * gnu/packages/textutils.scm (libgtextutils)[native-inputs]: Add gcc-5.

[...]

> * gnu/packages/bioinformatics.scm (fastx-toolkit)[native-inputs]: Add gcc-6.

Applied both, thank you!

Ludo’.

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