GNU bug report logs - #38489
[PATCH] gnu: Add r-qtl2.

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Efraim Flashner <efraim <at> flashner.co.il>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#38489: closed ([PATCH] gnu: Add r-qtl2.)
Date: Tue, 10 Dec 2019 11:14:02 +0000

[Message part 1 (text/plain, inline)]

Your message dated Tue, 10 Dec 2019 13:12:59 +0200
with message-id <20191210111259.GA8302 <at> E5400>
and subject line Re: [bug#38489] [PATCH] gnu: Add r-qtl2.
has caused the debbugs.gnu.org bug report #38489,
regarding [PATCH] gnu: Add r-qtl2.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
38489: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=38489
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Efraim Flashner <efraim <at> flashner.co.il>
To: guix-patches <at> gnu.org
Cc: Efraim Flashner <efraim <at> flashner.co.il>
Subject: [PATCH] gnu: Add r-qtl2.
Date: Wed,  4 Dec 2019 10:57:35 +0200

* gnu/packages/bioinformatics.scm (r-qtl2): New variable.
---
 gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b0d070b4e7..522cde959e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8239,6 +8239,35 @@ identify genotyping errors, and to perform single-QTL and two-QTL,
 two-dimensional genome scans.")
   (license license:gpl3)))
 
+(define-public r-qtl2
+  (package
+    (name "r-qtl2")
+    (version "0.20")
+    (source (origin
+      (method git-fetch)
+      ;; Not yet available in cran.
+      (uri (git-reference
+             (url "https://github.com/rqtl/qtl2.git")
+             (commit version)))
+      (file-name (git-file-name name version))
+      (sha256
+       (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-data-table" ,r-data-table)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcppeigen" ,r-rcppeigen)
+       ("r-rsqlite" ,r-rsqlite)
+       ("r-yaml" ,r-yaml)))
+    (home-page "https://kbroman.org/qtl2/")
+    (synopsis
+     "QTL analysis software for high-dimensional data and complex cross designs")
+    (description
+     "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software
+R/qtl, to better handle high-dimensional data and complex cross designs.")
+    (license license:gpl3)))
+
 (define-public r-zlibbioc
   (package
     (name "r-zlibbioc")
-- 
2.24.0

[Message part 3 (message/rfc822, inline)]

From: Efraim Flashner <efraim <at> flashner.co.il>
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: 38489-done <at> debbugs.gnu.org
Subject: Re: [bug#38489] [PATCH] gnu: Add r-qtl2.
Date: Tue, 10 Dec 2019 13:12:59 +0200

[Message part 4 (text/plain, inline)]

Thanks. Patch pushed.


-- 
Efraim Flashner   <efraim <at> flashner.co.il>   אפרים פלשנר
GPG key = A28B F40C 3E55 1372 662D  14F7 41AA E7DC CA3D 8351
Confidentiality cannot be guaranteed on emails sent or received unencrypted

[signature.asc (application/pgp-signature, inline)]

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.