Subject: bug#38489: closed (Re: [bug#38489] [PATCH] gnu: Add r-qtl2.)

From: [email-masked] (GNU bug Tracking System)
Date: Tue, 10 Dec 2019 11:14:02 +0000

Your bug report

#38489: [PATCH] gnu: Add r-qtl2.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
38489: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=38489
GNU Bug Tracking System
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Subject: Re: [bug#38489] [PATCH] gnu: Add r-qtl2.
From: Efraim Flashner <[email-masked]>
To: zimoun <[email-masked]>
Cc: [email-masked]
Date: Tue, 10 Dec 2019 13:12:59 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

Thanks. Patch pushed.

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Efraim Flashner   <[email-masked]>   אפרים פלשנר
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Subject: [PATCH] gnu: Add r-qtl2.
From: Efraim Flashner <[email-masked]>
To: [email-masked]
Cc: Efraim Flashner <[email-masked]>
Date: Wed, 4 Dec 2019 10:57:35 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/bioinformatics.scm (r-qtl2): New variable.
---
 gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b0d070b4e7..522cde959e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8239,6 +8239,35 @@ identify genotyping errors, and to perform single-QTL and two-QTL,
 two-dimensional genome scans.")
   (license license:gpl3)))
 
+(define-public r-qtl2
+  (package
+    (name "r-qtl2")
+    (version "0.20")
+    (source (origin
+      (method git-fetch)
+      ;; Not yet available in cran.
+      (uri (git-reference
+             (url "https://github.com/rqtl/qtl2.git")
+             (commit version)))
+      (file-name (git-file-name name version))
+      (sha256
+       (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-data-table" ,r-data-table)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcppeigen" ,r-rcppeigen)
+       ("r-rsqlite" ,r-rsqlite)
+       ("r-yaml" ,r-yaml)))
+    (home-page "https://kbroman.org/qtl2/")
+    (synopsis
+     "QTL analysis software for high-dimensional data and complex cross designs")
+    (description
+     "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software
+R/qtl, to better handle high-dimensional data and complex cross designs.")
+    (license license:gpl3)))
+
 (define-public r-zlibbioc
   (package
     (name "r-zlibbioc")
-- 
2.24.0