From unknown Thu Aug 14 21:55:04 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#38290] [PATCH] gnu: nmoldyn: New source code location. Resent-From: Konrad Hinsen Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 20 Nov 2019 08:12:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 38290 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 38290@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.157423746713377 (code B ref -1); Wed, 20 Nov 2019 08:12:02 +0000 Received: (at submit) by debbugs.gnu.org; 20 Nov 2019 08:11:07 +0000 Received: from localhost ([127.0.0.1]:48924 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXL4s-0003Th-Uw for submit@debbugs.gnu.org; Wed, 20 Nov 2019 03:11:07 -0500 Received: from lists.gnu.org ([209.51.188.17]:43204) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXL4o-0003TX-Il for submit@debbugs.gnu.org; Wed, 20 Nov 2019 03:11:05 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:47275) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iXL4m-0007v4-Mb for guix-patches@gnu.org; Wed, 20 Nov 2019 03:11:02 -0500 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: ** X-Spam-Status: No, score=2.4 required=5.0 tests=BAYES_20,DATE_IN_PAST_12_24, FREEMAIL_FROM,RCVD_IN_DNSWL_LOW,SPOOFED_FREEMAIL,URIBL_BLOCKED autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iXL4c-0001mT-9k for guix-patches@gnu.org; Wed, 20 Nov 2019 03:10:53 -0500 Received: from wout2-smtp.messagingengine.com ([64.147.123.25]:57459) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1iXL4a-0001aY-1i for guix-patches@gnu.org; Wed, 20 Nov 2019 03:10:48 -0500 Received: from compute7.internal (compute7.nyi.internal [10.202.2.47]) by mailout.west.internal (Postfix) with ESMTP id E98DE5AF; Wed, 20 Nov 2019 03:10:40 -0500 (EST) Received: from mailfrontend2 ([10.202.2.163]) by compute7.internal (MEProxy); Wed, 20 Nov 2019 03:10:41 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=fastmail.net; h= from:to:subject:date:message-id:mime-version:content-type; s= fm2; bh=hMB/FZqIvSdMfUJPLB5GJ0h+SljXKlKkzASqi+XUkf0=; b=kyGLGMNY Z5IA/8koQZOz/diclBQeflwjc+3/KhBfN5ZEMkivmGPCXY5Br5cxv8ldwz33nANJ 33SDVhXAQYMAnSg2DW1nOXyCdfKwT1e7xGDQtXUSaTrSPM0qBbGUFGbAn7VpIkyO u9ro1iqUcOn9PAXVVpEkozQAh/o85Ip1fCm/ZKH8Acxc94CqHrXUXSDalEpwwqz9 0xKfYB8Y0PD+stHqnWHERQvlGCWm4aj0kb8bMRx8PLQlhhniLDzxpCDIKwAbQoa8 0Vw/PZZv/7B0FqctJ8ddBq3kHmpR5/dWbVTq7XjX2W4i7DLb0g4M2EgizH9hIIi5 SJER93TEqYUCdg== DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=content-type:date:from:message-id :mime-version:subject:to:x-me-proxy:x-me-proxy:x-me-sender :x-me-sender:x-sasl-enc; s=fm1; bh=hMB/FZqIvSdMfUJPLB5GJ0h+SljXK lKkzASqi+XUkf0=; b=j0X4loCwwq2xQkehEEbFYPdzk0rXDGFQ6a4yO5p7lqGSi FmyTqcNmcLXSffHUox8P1XJQO170fidrabMMMCcHF9NTvYYhP/oXrSQ9UwPgvVbf yvjBkw1LuVf2WCRojfRbTfW+hFBnAikyevq3KBjto1yNYBScHDl/lZD1e1bdCNET yDgtd4/9FuoJP7RmT2cTYn8kbUyJN3t3VVEvawiU9eNIwh/4xHrbeKZrqEsdnu4B /cYM7HKrepO9seNIHwdWJH76q3Z9XXIneDd/a3PhoIeJkt//ekWSqld80tDpdSel U6PaPo8O4vvTms8qXv1hO5/jRGZuxh5V4Z9bEpfGw== X-ME-Sender: X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgedufedrudegledgudduiecutefuodetggdotefrod ftvfcurfhrohhfihhlvgemucfhrghsthforghilhdpqfgfvfdpuffrtefokffrpgfnqfgh necuuegrihhlohhuthemuceftddtnecunecujfgurhephffvufffkfggtgesthdtredttd dttdenucfhrhhomhepmfhonhhrrgguucfjihhnshgvnhcuoehkohhnrhgrugdrhhhinhhs vghnsehfrghsthhmrghilhdrnhgvtheqnecuffhomhgrihhnpehgihhthhhusgdrtghomh dpsghithgsuhgtkhgvthdrohhrghenucfkphepledvrdduieelrdejrddutddunecurfgr rhgrmhepmhgrihhlfhhrohhmpehkohhnrhgrugdrhhhinhhsvghnsehfrghsthhmrghilh drnhgvthenucevlhhushhtvghrufhiiigvpedt X-ME-Proxy: Received: from khs-macbook.home (lfbn-1-4320-101.w92-169.abo.wanadoo.fr [92.169.7.101]) by mail.messagingengine.com (Postfix) with ESMTPA id D824C3060057; Wed, 20 Nov 2019 03:10:39 -0500 (EST) From: Konrad Hinsen Date: Tue, 19 Nov 2019 19:49:27 +0100 Message-ID: MIME-Version: 1.0 Content-Type: text/plain X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] [fuzzy] X-Received-From: 64.147.123.25 X-Spam-Score: 1.2 (+) X-Spam-Report: Spam detection software, running on the system "debbugs.gnu.org", has NOT identified this incoming email as spam. The original message has been attached to this so you can view it or label similar future email. If you have any questions, see the administrator of that system for details. Content preview: * gnu/packages/chemistry.scm (nmoldyn): New source code location. Following the annoucement of Bitbucket to delete all Mercurial repositories in June 2020, the source code has been migrated to GitHub. [...] Content analysis details: (1.2 points, 10.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- 0.0 URIBL_BLOCKED ADMINISTRATOR NOTICE: The query to URIBL was blocked. See http://wiki.apache.org/spamassassin/DnsBlocklists#dnsbl-block for more information. [URIs: fastmail.net] 0.0 SPF_HELO_NONE SPF: HELO does not publish an SPF Record 0.0 FREEMAIL_FROM Sender email is commonly abused enduser mail provider (konrad.hinsen[at]fastmail.net) 0.7 SPF_NEUTRAL SPF: sender does not match SPF record (neutral) 0.8 DATE_IN_PAST_12_24 Date: is 12 to 24 hours before Received: date -2.3 RCVD_IN_DNSWL_MED RBL: Sender listed at https://www.dnswl.org/, medium trust [209.51.188.17 listed in list.dnswl.org] 2.0 SPOOFED_FREEMAIL No description available. X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.8 (-) * gnu/packages/chemistry.scm (nmoldyn): New source code location. Following the annoucement of Bitbucket to delete all Mercurial repositories in June 2020, the source code has been migrated to GitHub. --- gnu/packages/chemistry.scm | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/gnu/packages/chemistry.scm b/gnu/packages/chemistry.scm index b6345b9d27..3bdd406a47 100644 --- a/gnu/packages/chemistry.scm +++ b/gnu/packages/chemistry.scm @@ -243,13 +243,14 @@ analogy is that InChI is the bar-code for chemistry and chemical structures.") (version "3.0.11") (source (origin - (method url-fetch) - (uri (string-append "https://bitbucket.org/khinsen/" - "nmoldyn3/downloads/nMOLDYN-" - version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/khinsen/nMOLDYN3") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "1mvmz3lkr217kdrd8cvdr1d82y58wp1403c9rnd943mijgq8xb5a")))) + "016h4bqg419p6s7bcx55q5iik91gqmk26hbnfgj2j6zl0j36w51r")))) (build-system python-build-system) (inputs `(("python-matplotlib" ,(with-numpy-1.8 python2-matplotlib)) -- 2.24.0 From unknown Thu Aug 14 21:55:04 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#38290] [PATCH] gnu: nmoldyn: New source code location. Resent-From: Ludovic =?UTF-8?Q?Court=C3=A8s?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 21 Nov 2019 09:12:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 38290 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Konrad Hinsen Cc: 38290@debbugs.gnu.org Received: via spool by 38290-submit@debbugs.gnu.org id=B38290.157432751926772 (code B ref 38290); Thu, 21 Nov 2019 09:12:02 +0000 Received: (at 38290) by debbugs.gnu.org; 21 Nov 2019 09:11:59 +0000 Received: from localhost ([127.0.0.1]:51229 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXiVL-0006xj-42 for submit@debbugs.gnu.org; Thu, 21 Nov 2019 04:11:59 -0500 Received: from eggs.gnu.org ([209.51.188.92]:51912) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXiVJ-0006xT-B8 for 38290@debbugs.gnu.org; Thu, 21 Nov 2019 04:11:57 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]:55269) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1iXiVE-00088E-8I; Thu, 21 Nov 2019 04:11:52 -0500 Received: from wifi-eduroam-20-234.siege.inria.fr ([128.93.20.234]:52882 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1iXiVD-0006G7-Ok; Thu, 21 Nov 2019 04:11:52 -0500 From: Ludovic =?UTF-8?Q?Court=C3=A8s?= References: Date: Thu, 21 Nov 2019 10:11:44 +0100 In-Reply-To: (Konrad Hinsen's message of "Tue, 19 Nov 2019 19:49:27 +0100") Message-ID: <877e3tk2zz.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.3 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hello! Konrad Hinsen skribis: > * gnu/packages/chemistry.scm (nmoldyn): New source code location. > Following the annoucement of Bitbucket to delete all > Mercurial repositories in June 2020, the source code has > been migrated to GitHub. [...] > - (method url-fetch) > - (uri (string-append "https://bitbucket.org/khinsen/" > - "nmoldyn3/downloads/nMOLDYN-" > - version ".tar.gz")) > + (method git-fetch) > + (uri (git-reference > + (url "https://github.com/khinsen/nMOLDYN3") > + (commit (string-append "v" version)))) > + (file-name (git-file-name name version)) > (sha256 > (base32 > - "1mvmz3lkr217kdrd8cvdr1d82y58wp1403c9rnd943mijgq8xb5a")))) > + "016h4bqg419p6s7bcx55q5iik91gqmk26hbnfgj2j6zl0j36w51r")))) It=E2=80=99s weird that the content hash differs. Did you try to diff the = hg checkout and the Git checkout? Thanks, Ludo=E2=80=99. From unknown Thu Aug 14 21:55:04 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#38290] [PATCH] gnu: nmoldyn: New source code location. Resent-From: Ludovic =?UTF-8?Q?Court=C3=A8s?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 21 Nov 2019 09:14:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 38290 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Konrad Hinsen Cc: 38290@debbugs.gnu.org Received: via spool by 38290-submit@debbugs.gnu.org id=B38290.157432762326959 (code B ref 38290); Thu, 21 Nov 2019 09:14:02 +0000 Received: (at 38290) by debbugs.gnu.org; 21 Nov 2019 09:13:43 +0000 Received: from localhost ([127.0.0.1]:51237 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXiX0-00070k-P6 for submit@debbugs.gnu.org; Thu, 21 Nov 2019 04:13:42 -0500 Received: from eggs.gnu.org ([209.51.188.92]:52106) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXiWz-00070Y-L8 for 38290@debbugs.gnu.org; Thu, 21 Nov 2019 04:13:41 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]:55373) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1iXiWu-00014c-Ib; Thu, 21 Nov 2019 04:13:36 -0500 Received: from wifi-eduroam-20-234.siege.inria.fr ([128.93.20.234]:52890 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1iXiWt-0006Vc-Sm; Thu, 21 Nov 2019 04:13:36 -0500 From: Ludovic =?UTF-8?Q?Court=C3=A8s?= References: <877e3tk2zz.fsf@gnu.org> Date: Thu, 21 Nov 2019 10:13:34 +0100 In-Reply-To: <877e3tk2zz.fsf@gnu.org> ("Ludovic \=\?utf-8\?Q\?Court\=C3\=A8s\=22'\?\= \=\?utf-8\?Q\?s\?\= message of "Thu, 21 Nov 2019 10:11:44 +0100") Message-ID: <87y2w9ioch.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.3 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Ludovic Court=C3=A8s skribis: >> - (method url-fetch) >> - (uri (string-append "https://bitbucket.org/khinsen/" >> - "nmoldyn3/downloads/nMOLDYN-" >> - version ".tar.gz")) >> + (method git-fetch) >> + (uri (git-reference >> + (url "https://github.com/khinsen/nMOLDYN3") >> + (commit (string-append "v" version)))) >> + (file-name (git-file-name name version)) >> (sha256 >> (base32 >> - "1mvmz3lkr217kdrd8cvdr1d82y58wp1403c9rnd943mijgq8xb5a")))) >> + "016h4bqg419p6s7bcx55q5iik91gqmk26hbnfgj2j6zl0j36w51r")))) > > It=E2=80=99s weird that the content hash differs. Did you try to diff th= e hg > checkout and the Git checkout? Oh forget it, I see we=E2=80=99re going from a tarball to a checkout, hence= the difference. LGTM! :-) From debbugs-submit-bounces@debbugs.gnu.org Thu Nov 21 05:14:15 2019 Received: (at control) by debbugs.gnu.org; 21 Nov 2019 10:14:15 +0000 Received: from localhost ([127.0.0.1]:51293 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXjTb-0008U6-FO for submit@debbugs.gnu.org; Thu, 21 Nov 2019 05:14:15 -0500 Received: from eggs.gnu.org ([209.51.188.92]:32788) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXjTX-0008Ti-Qn for control@debbugs.gnu.org; Thu, 21 Nov 2019 05:14:12 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]:55968) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1iXjTS-0006Z1-OQ for control@debbugs.gnu.org; Thu, 21 Nov 2019 05:14:06 -0500 Received: from wifi-eduroam-20-234.siege.inria.fr ([128.93.20.234]:53980 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1iXjTR-0000dB-C3 for control@debbugs.gnu.org; Thu, 21 Nov 2019 05:14:06 -0500 Date: Thu, 21 Nov 2019 11:14:02 +0100 Message-Id: <87k17tiljp.fsf@gnu.org> To: control@debbugs.gnu.org From: =?utf-8?Q?Ludovic_Court=C3=A8s?= Subject: control message for bug #38290 MIME-version: 1.0 Content-type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) tags 38290 fixed close 38290 quit