From unknown Sun Jun 22 17:14:53 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#37666] [PATCH 0/2] Add r-htqpcr and r-unifiedwmwqpcr. Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 08 Oct 2019 16:54:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 37666 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 37666@debbugs.gnu.org Cc: zimoun X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.15705535984112 (code B ref -1); Tue, 08 Oct 2019 16:54:01 +0000 Received: (at submit) by debbugs.gnu.org; 8 Oct 2019 16:53:18 +0000 Received: from localhost ([127.0.0.1]:51406 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHsjd-00014F-SS for submit@debbugs.gnu.org; Tue, 08 Oct 2019 12:53:18 -0400 Received: from lists.gnu.org ([209.51.188.17]:44252) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHsjc-000147-0p for submit@debbugs.gnu.org; Tue, 08 Oct 2019 12:53:16 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:45809) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iHsja-00080R-VH for guix-patches@gnu.org; Tue, 08 Oct 2019 12:53:15 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.0 required=5.0 tests=BAYES_40,FREEMAIL_FROM autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iHsja-0006eD-2a for guix-patches@gnu.org; Tue, 08 Oct 2019 12:53:14 -0400 Received: from mail-wr1-x429.google.com ([2a00:1450:4864:20::429]:38660) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iHsjZ-0006dL-Sw for guix-patches@gnu.org; Tue, 08 Oct 2019 12:53:14 -0400 Received: by mail-wr1-x429.google.com with SMTP id w12so20263357wro.5 for ; Tue, 08 Oct 2019 09:53:13 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=LftSKhP2TELA3ERNSKNu3n0QJjaeIMUIjyT8a0MCf5s=; b=T30EcAcGBc3xhZUM7Z3U8Y9MCjDbzBBeZvl8eKkc/bYHvkBqauPkMQW8mK+rOhsyCs GiJaBA2atbHJVDTC0HuqWWfOT3eeqz3yfS1vvvVeXwyABfuMYIk+mGkdUZWzGudTQ+pE 7b7YYwVdlXfgzZRLh/IfdsUPDd9TX71R6FZmDWWw7HkW4xZZ+T80B6448o8zVGvgb8+X D1h+jY8UR6LV9za/t24ixA+PQC1isdc3bxAQv7yvbXGZy+lVISpYTu2Qdxdm1f/fGH9R zWJuR+35v6oRKNCv4TfRgWgxO8UWiMcf1IyuJHRvEElME0kBKyxjWj4jO6ySvkbr1vE1 t/vQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=LftSKhP2TELA3ERNSKNu3n0QJjaeIMUIjyT8a0MCf5s=; b=ZtGRXr1rLohN2Dbq1lubz98cpFIdruvLgAHtnVJ57osPvNgDuNCI6UAfUpqvElwnEC tApZ76zwc3BMw3a15PcEkzDMX9Zsw+aC4FfUhiAqItfvBNbV9/CDhcV5zC7/FzBUsfTQ 5v50wS68eer/hK4/AhIw62FK1XZ6PHWFaN7Pwyliqb3WccbZj0YAwpOwWNZzH33pAb+w hvjK/IyuivQ6QZw+s49OOKmrS5EEfv0QcDp9aZ+m6S4IhEYfNW4oAnSVGsGtttZz9JEW RVaeP8c0PYxlY9/I21ngGXJcF8pqltotvqxohIG2PG5sax7EKIA5iY3uQqLmoY8DJeHH 33zA== X-Gm-Message-State: APjAAAX/gx+MwAKpV7Yw9cHUUJcGJgMRFQJT68czWmCdABj9JTsIvRHB 851yW4Wd/Zw365oWHa3TZWfdEOny X-Google-Smtp-Source: APXvYqzRpmh+S6vp5W37B1N+jkMm2Lf1AQ+BKlkdG0ujenkA7fCK06jal3AFzxGSWsWID1cPPgNT2Q== X-Received: by 2002:adf:fb48:: with SMTP id c8mr1374046wrs.247.1570553591848; Tue, 08 Oct 2019 09:53:11 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id t83sm6179564wmt.18.2019.10.08.09.53.11 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Tue, 08 Oct 2019 09:53:11 -0700 (PDT) From: zimoun Date: Tue, 8 Oct 2019 18:53:07 +0200 Message-Id: <20191008165307.903-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-Received-From: 2a00:1450:4864:20::429 X-Spam-Score: 0.7 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) Dear, These patches add two BioConductor packages. The licenses are compliant with the ones find in the file 'DESCRIPTION' but `guix build' reports: installing 0 license files from '.' All the best, simon zimoun (2): gnu: Add r-htqpcr. gnu: Add r-unifiedwmwqpcr. gnu/packages/bioconductor.scm | 59 +++++++++++++++++++++++++++++++++++ 1 file changed, 59 insertions(+) -- 2.21.0 From unknown Sun Jun 22 17:14:53 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#37666] [PATCH 1/2] gnu: Add r-htqpcr. References: <20191008165307.903-1-zimon.toutoune@gmail.com> In-Reply-To: <20191008165307.903-1-zimon.toutoune@gmail.com> Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 08 Oct 2019 17:36:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 37666 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 37666@debbugs.gnu.org Cc: zimoun Received: via spool by 37666-submit@debbugs.gnu.org id=B37666.157055614324110 (code B ref 37666); Tue, 08 Oct 2019 17:36:02 +0000 Received: (at 37666) by debbugs.gnu.org; 8 Oct 2019 17:35:43 +0000 Received: from localhost ([127.0.0.1]:51445 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtOh-0006Go-D7 for submit@debbugs.gnu.org; Tue, 08 Oct 2019 13:35:43 -0400 Received: from mail-wm1-f52.google.com ([209.85.128.52]:50617) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtOc-0006GT-3c for 37666@debbugs.gnu.org; Tue, 08 Oct 2019 13:35:41 -0400 Received: by mail-wm1-f52.google.com with SMTP id 5so4089113wmg.0 for <37666@debbugs.gnu.org>; Tue, 08 Oct 2019 10:35:38 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=4FkCApbLNMj9G+G/j9f4QjRPwF/OMXpghAjr35XZQik=; b=f8QQo9VjAvVBdl2aJ+TxBNAErEnZ3e/6VfWBc8Pe6zc3rzucPhWFGdSqT4RlpFVpZT TXyMxO7TKr038VAoKcjNmeqwnKeYob+yFFK0xKcOWQqKjBuQmzEeoYxwMn5VdWPW2f44 u/bodlS22da34lL/xcB6uQt1RFNPsF+yUpLn1YUJ8ur2fRb19SaOMUU2pzGm5kglxdX9 HjoLc8lARRlQMzbF/5qD4bbm0mhySOZZ70cb5JznS/bi3R87QhLMFCqoSTeBwA0X3ZZd Ir9EFBvhYE++saqC91W/MHRWk/+hghVZhLlg7fkJN+rdWS3+eW77YsLt6+Jdj91X5q9z TqOg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=4FkCApbLNMj9G+G/j9f4QjRPwF/OMXpghAjr35XZQik=; b=tchi4konkGfFqSfTXE2cyPodmmJfyXCKeJ6BsaB1QuKLQeblkXp2jn+B7iiktyTCIL oiC05TugNDVisosIYfNf1qz7y1XO3jlnxOuhN03ynCRiahAf4aMR2R02PZ0WcGirTZXO M1NnG1f58FTCfYaB9/zDjXMCUcG1ODzvzHv+4ilI95ROk18ro1sBkODs2qpbspUxvLLU t6Zgb8bfhQKtvQpg+618e4jZh83YPMFKVtjsJUuS80yjYtyFrCrYfBIouxh5x0c0KDuE 16HIfJWuUw+B2qiLyQ9fPf22FO7XXsodC/wLeGWEjRRhFRZKMr2iQxYU/T7t/vL1joSn qaZQ== X-Gm-Message-State: APjAAAXx6e7ba1m0DiV5n4QwRXrsrILrTFOaG9Besq01fXdGylrrpVSs icpbihb27xKkVEYGwoqKJpSWrCS6 X-Google-Smtp-Source: APXvYqxaUsw1CZx2SOhkeTOVZzGusQhVUk5q204aS8jWx+ZfMZNCBprirDO76IoFMB2iGD/qpyPNjA== X-Received: by 2002:a1c:1acd:: with SMTP id a196mr4691839wma.19.1570556132010; Tue, 08 Oct 2019 10:35:32 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s10sm5311960wmf.48.2019.10.08.10.35.31 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Tue, 08 Oct 2019 10:35:31 -0700 (PDT) From: zimoun Date: Tue, 8 Oct 2019 19:35:16 +0200 Message-Id: <20191008173518.1074-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioconductor.scm (r-htqpcr): New variable. --- gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7b0405427c..4fc4ffbce2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2,6 +2,7 @@ ;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus ;;; Copyright © 2016, 2017, 2018 Roel Janssen ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice +;;; Copyright © 2019 Simon Tournier ;;; ;;; This file is part of GNU Guix. ;;; @@ -6048,3 +6049,36 @@ attributable to individual, tissue, time point, or technical variables. The package includes dream differential expression analysis for repeated measures.") (license license:gpl2+))) + +(define-public r-htqpcr + (package + (name "r-htqpcr") + (version "1.38.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "HTqPCR" version)) + (sha256 + (base32 + "09xgj797f0qsbm4jswxw7ijjwa4jxg06bfkq66xfhbvascyyrhg7")))) + (properties `((upstream-name . "HTqPCR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-affy" ,r-affy) + ("r-biobase" ,r-biobase) + ("r-gplots" ,r-gplots) + ("r-limma" ,r-limma) + ("r-rcolorbrewer" ,r-rcolorbrewer))) + (home-page "http://www.ebi.ac.uk/bertone/software") + (synopsis "Automated analysis of high-throughput qPCR data") + (description + "Analysis of Ct values from high throughput quantitative real-time +PCR (qPCR) assays across multiple conditions or replicates. The input data +can be from spatially-defined formats such ABI TaqMan Low Density Arrays or +OpenArray; LightCycler from Roche Applied Science; the CFX plates from Bio-Rad +Laboratories; conventional 96- or 384-well plates; or microfluidic devices +such as the Dynamic Arrays from Fluidigm Corporation. HTqPCR handles data +loading, quality assessment, normalization, visualization and parametric or +non-parametric testing for statistical significance in Ct values between +features (e.g. genes, microRNAs).") + (license license:artistic2.0))) -- 2.21.0 From unknown Sun Jun 22 17:14:53 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#37666] [PATCH 1/1] gnu: Add r-unifiedwmwqpcr. Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 08 Oct 2019 17:36:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 37666 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 37666@debbugs.gnu.org Cc: zimoun Received: via spool by 37666-submit@debbugs.gnu.org id=B37666.157055615524139 (code B ref 37666); Tue, 08 Oct 2019 17:36:02 +0000 Received: (at 37666) by debbugs.gnu.org; 8 Oct 2019 17:35:55 +0000 Received: from localhost ([127.0.0.1]:51448 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtOs-0006HG-PG for submit@debbugs.gnu.org; Tue, 08 Oct 2019 13:35:54 -0400 Received: from mail-wr1-f51.google.com ([209.85.221.51]:45515) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtOq-0006H1-V7 for 37666@debbugs.gnu.org; Tue, 08 Oct 2019 13:35:53 -0400 Received: by mail-wr1-f51.google.com with SMTP id r5so20319322wrm.12 for <37666@debbugs.gnu.org>; Tue, 08 Oct 2019 10:35:52 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=3vlJfO3AS1XFiBvmzARY2cSiRQ6pX/0UunSyYRpqVmk=; b=LZJY/f6Ux/NpaEsvD54GFfgxrRAVZgzBhqYa+5TBBaA0q0tFHAftd6YwgkgMB6Rsik yv1NSddGiPhvOWBa7AxW+yAvKh1/2ZbrZc4jku9edh/5xtaLyBtzCHs0w2JyRNTpKFj+ 7MuVUFFIn3tCD+sJciS4YgpBCSJqmIbWxJPEQ/VzAjztGIrvYztnmIwjds/BEvPVOAXY FQIziS8mPUFSVUPIjmb2uvdX0Jwx6sVFjtQZMIUxr+nIEZSHO8GwGQyozKUxVUOMFUQ5 mqgSb3YHiqo4gMBcij2vZCpAzXURFAMyKkyhqvLo/jjHpY8gsFraH71NV/ExBS/JUQdT inHQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=3vlJfO3AS1XFiBvmzARY2cSiRQ6pX/0UunSyYRpqVmk=; b=DLGR2/ddVitv3M/cnaoWhsngZoOS0+SKD0XgCuzBEiELJbyMqvoOVtJuLlXB+pn44z pFiS4CyYwpdzFLc2cHb3Dmph5fEjK9vy3xUgb3wUuluWAgpYRNyfrqL7cMlhgHOFbFbY uzITvj86zAqAGBQDSK5MrGAOKEnaq7NqIfswnBzhVuiayKBCRrPrnEO+pP5+VrBtRfvk Y1bPI/OMN7zh8/fwAXujpuspSyuOzZeL+dekIYwIh0dhZZt61N8Nv9T7+5YDBZNxx1R8 /BmF7Z8/pP2M0SScBZT+D7c8KEyC4bG21pC7GMx3qKau1M/JdK/RUTAedabvgIUToLLk 7Okw== X-Gm-Message-State: APjAAAV+vITl3rUllJiNzgL896BHPgwauWM+hZXuLlCrDx9c6KQZSsxb AeY9/GluwomU3MR+mPCB5cOdRfQX X-Google-Smtp-Source: APXvYqx++6g0fir+o4IFYmKV2jKj+NXlRhmkW6An7ZYkupwPqf5CosWyr/PGylJC7ZTy21MQEICsrw== X-Received: by 2002:adf:9d84:: with SMTP id p4mr27377588wre.39.1570556146926; Tue, 08 Oct 2019 10:35:46 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s10sm5311960wmf.48.2019.10.08.10.35.46 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Tue, 08 Oct 2019 10:35:46 -0700 (PDT) From: zimoun Date: Tue, 8 Oct 2019 19:35:17 +0200 Message-Id: <20191008173518.1074-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 In-Reply-To: <20191008173518.1074-1-zimon.toutoune@gmail.com> References: <20191008173518.1074-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4fc4ffbce2..9cd36fc69c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6082,3 +6082,28 @@ loading, quality assessment, normalization, visualization and parametric or non-parametric testing for statistical significance in Ct values between features (e.g. genes, microRNAs).") (license license:artistic2.0))) + +(define-public r-unifiedwmwqpcr + (package + (name "r-unifiedwmwqpcr") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "unifiedWMWqPCR" version)) + (sha256 + (base32 + "10j70bp5y1x2prz2iagqmwf04y79yqinq08wz4ilh8wggb9f7l8a")))) + (properties + `((upstream-name . "unifiedWMWqPCR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-htqpcr" ,r-htqpcr))) + (home-page "https://bioconductor.org/packages/unifiedWMWqPCR") + (synopsis "Unified Wilcoxon-Mann Whitney Test for differential expression in qPCR data") + (description + "This packages implements the unified Wilcoxon-Mann-Whitney Test for qPCR +data. This modified test allows for testing differential expression in qPCR +data.") + (license license:gpl2+))) -- 2.21.0 From unknown Sun Jun 22 17:14:53 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#37666] [PATCH 2/2] gnu: Add r-unifiedwmwqpcr. Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 08 Oct 2019 17:37:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 37666 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 37666@debbugs.gnu.org Cc: zimoun Received: via spool by 37666-submit@debbugs.gnu.org id=B37666.157055617424205 (code B ref 37666); Tue, 08 Oct 2019 17:37:02 +0000 Received: (at 37666) by debbugs.gnu.org; 8 Oct 2019 17:36:14 +0000 Received: from localhost ([127.0.0.1]:51453 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtP9-0006II-2U for submit@debbugs.gnu.org; Tue, 08 Oct 2019 13:36:11 -0400 Received: from mail-wr1-f46.google.com ([209.85.221.46]:36432) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHtP8-0006I7-BI for 37666@debbugs.gnu.org; Tue, 08 Oct 2019 13:36:10 -0400 Received: by mail-wr1-f46.google.com with SMTP id y19so20408183wrd.3 for <37666@debbugs.gnu.org>; Tue, 08 Oct 2019 10:36:10 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=3vlJfO3AS1XFiBvmzARY2cSiRQ6pX/0UunSyYRpqVmk=; b=fCq+5hcg9QQP6ejScN6P79j+zXc8+8PivcXfWVMIRtD06lMrc71zsThwwAokM3y6/h f/fT9yztyETY4vB3S+anJJzniFW/qt+UK37+kn4JWQgQIvqAdS//sZwfONCcOT6EQgtN Pv4pjkQfSy4xbTL6EPXnKD+se6Y+cSlTgqDupVThUw49gRPzuD3d+UZCH15ywWGnBjqL MaeRQkxeYztHCbc0SO560MyAVkDnzQLWlVstifXOikjo4tEeaWXHa6O31zmFX6bZMNgT QZt6awopFUTCyZBkn3UHAMlByxhZTjpZXkjRMpA/nfu11OvpSDDvA7vU6R8zGoY3JNzf hh/g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=3vlJfO3AS1XFiBvmzARY2cSiRQ6pX/0UunSyYRpqVmk=; b=V0ZfMeRD5vhOvH9b6xThzNCEoSiR4UAlOp2YMjmJjfUFqoG7RNQ3CaAN6PbJ5b1vAy g2Z8KTQ8nV85W4uWGqRelt7eiOOGoE4BeHhM9WVZHdOuFW4CBh7c1hEYm0JBXUgkmUUZ /qwRtesY15xcAtTt6hmG9qincHYwXcuEHFZvlKTM3YAhrHrLrBO8ND4sRGeR4UKf/Njb wl/ri0xfN07S5hjt3Dg/kbgO+bMz0CA7Web2Po053XCcuk7FRIqytCBxWDocdqUgt4Rx EZWzNCQWRa08dspRDkvYVHBnYTF7yboKMJzojbptqHnzQToGPlYbPqIPwS1sLXkEu1wk YRsQ== X-Gm-Message-State: APjAAAXTdmOHwgu2XxvParisc0ZWJURcwcrY6bQOanR945j3PQnOdo7a 4J7mcS99xZponzClwYGS0QebR8Wk X-Google-Smtp-Source: APXvYqz9MB9W83WvpOkOaWRgEdFsZO7wj50BwQXD6WHfEPkrLOZ0U/n+f4O8l1MOaG9ANaVTLCIvJg== X-Received: by 2002:a5d:5052:: with SMTP id h18mr2449463wrt.397.1570556164568; Tue, 08 Oct 2019 10:36:04 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id s10sm5311960wmf.48.2019.10.08.10.36.03 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Tue, 08 Oct 2019 10:36:04 -0700 (PDT) From: zimoun Date: Tue, 8 Oct 2019 19:35:18 +0200 Message-Id: <20191008173518.1074-3-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 In-Reply-To: <20191008173518.1074-1-zimon.toutoune@gmail.com> References: <20191008173518.1074-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4fc4ffbce2..9cd36fc69c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6082,3 +6082,28 @@ loading, quality assessment, normalization, visualization and parametric or non-parametric testing for statistical significance in Ct values between features (e.g. genes, microRNAs).") (license license:artistic2.0))) + +(define-public r-unifiedwmwqpcr + (package + (name "r-unifiedwmwqpcr") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "unifiedWMWqPCR" version)) + (sha256 + (base32 + "10j70bp5y1x2prz2iagqmwf04y79yqinq08wz4ilh8wggb9f7l8a")))) + (properties + `((upstream-name . "unifiedWMWqPCR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-htqpcr" ,r-htqpcr))) + (home-page "https://bioconductor.org/packages/unifiedWMWqPCR") + (synopsis "Unified Wilcoxon-Mann Whitney Test for differential expression in qPCR data") + (description + "This packages implements the unified Wilcoxon-Mann-Whitney Test for qPCR +data. This modified test allows for testing differential expression in qPCR +data.") + (license license:gpl2+))) -- 2.21.0 From unknown Sun Jun 22 17:14:53 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: zimoun Subject: bug#37666: closed (Re: [bug#37666] [PATCH 1/2] gnu: Add r-htqpcr.) Message-ID: References: <875zkqw6iz.fsf@gnu.org> <20191008165307.903-1-zimon.toutoune@gmail.com> X-Gnu-PR-Message: they-closed 37666 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 37666@debbugs.gnu.org Date: Tue, 15 Oct 2019 12:14:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1571141642-6680-1" This is a multi-part message in MIME format... ------------=_1571141642-6680-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #37666: [PATCH 0/2] Add r-htqpcr and r-unifiedwmwqpcr. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 37666@debbugs.gnu.org. --=20 37666: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D37666 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1571141642-6680-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 37666-done) by debbugs.gnu.org; 15 Oct 2019 12:13:50 +0000 Received: from localhost ([127.0.0.1]:42842 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iKLi1-0001jD-NX for submit@debbugs.gnu.org; Tue, 15 Oct 2019 08:13:49 -0400 Received: from eggs.gnu.org ([209.51.188.92]:55996) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iKLi0-0001j2-7H for 37666-done@debbugs.gnu.org; Tue, 15 Oct 2019 08:13:48 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:46228) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1iKLhv-0001D5-5C; Tue, 15 Oct 2019 08:13:43 -0400 Received: from [2001:660:6102:320:e120:2c8f:8909:cdfe] (port=45798 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1iKLhu-0004pU-1d; Tue, 15 Oct 2019 08:13:42 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: zimoun Subject: Re: [bug#37666] [PATCH 1/2] gnu: Add r-htqpcr. References: <20191008165307.903-1-zimon.toutoune@gmail.com> <20191008173518.1074-1-zimon.toutoune@gmail.com> Date: Tue, 15 Oct 2019 14:13:40 +0200 In-Reply-To: <20191008173518.1074-1-zimon.toutoune@gmail.com> (zimoun's message of "Tue, 8 Oct 2019 19:35:16 +0200") Message-ID: <875zkqw6iz.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.3 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 37666-done Cc: 37666-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hello! zimoun skribis: > * gnu/packages/bioconductor.scm (r-htqpcr): New variable. [...] > * gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable. Applied, thanks! :-) Ludo=E2=80=99. ------------=_1571141642-6680-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 8 Oct 2019 16:53:18 +0000 Received: from localhost ([127.0.0.1]:51406 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHsjd-00014F-SS for submit@debbugs.gnu.org; Tue, 08 Oct 2019 12:53:18 -0400 Received: from lists.gnu.org ([209.51.188.17]:44252) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iHsjc-000147-0p for submit@debbugs.gnu.org; Tue, 08 Oct 2019 12:53:16 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:45809) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iHsja-00080R-VH for guix-patches@gnu.org; Tue, 08 Oct 2019 12:53:15 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.0 required=5.0 tests=BAYES_40,FREEMAIL_FROM autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iHsja-0006eD-2a for guix-patches@gnu.org; Tue, 08 Oct 2019 12:53:14 -0400 Received: from mail-wr1-x429.google.com ([2a00:1450:4864:20::429]:38660) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iHsjZ-0006dL-Sw for guix-patches@gnu.org; Tue, 08 Oct 2019 12:53:14 -0400 Received: by mail-wr1-x429.google.com with SMTP id w12so20263357wro.5 for ; Tue, 08 Oct 2019 09:53:13 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=LftSKhP2TELA3ERNSKNu3n0QJjaeIMUIjyT8a0MCf5s=; b=T30EcAcGBc3xhZUM7Z3U8Y9MCjDbzBBeZvl8eKkc/bYHvkBqauPkMQW8mK+rOhsyCs GiJaBA2atbHJVDTC0HuqWWfOT3eeqz3yfS1vvvVeXwyABfuMYIk+mGkdUZWzGudTQ+pE 7b7YYwVdlXfgzZRLh/IfdsUPDd9TX71R6FZmDWWw7HkW4xZZ+T80B6448o8zVGvgb8+X D1h+jY8UR6LV9za/t24ixA+PQC1isdc3bxAQv7yvbXGZy+lVISpYTu2Qdxdm1f/fGH9R zWJuR+35v6oRKNCv4TfRgWgxO8UWiMcf1IyuJHRvEElME0kBKyxjWj4jO6ySvkbr1vE1 t/vQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=LftSKhP2TELA3ERNSKNu3n0QJjaeIMUIjyT8a0MCf5s=; b=ZtGRXr1rLohN2Dbq1lubz98cpFIdruvLgAHtnVJ57osPvNgDuNCI6UAfUpqvElwnEC tApZ76zwc3BMw3a15PcEkzDMX9Zsw+aC4FfUhiAqItfvBNbV9/CDhcV5zC7/FzBUsfTQ 5v50wS68eer/hK4/AhIw62FK1XZ6PHWFaN7Pwyliqb3WccbZj0YAwpOwWNZzH33pAb+w hvjK/IyuivQ6QZw+s49OOKmrS5EEfv0QcDp9aZ+m6S4IhEYfNW4oAnSVGsGtttZz9JEW RVaeP8c0PYxlY9/I21ngGXJcF8pqltotvqxohIG2PG5sax7EKIA5iY3uQqLmoY8DJeHH 33zA== X-Gm-Message-State: APjAAAX/gx+MwAKpV7Yw9cHUUJcGJgMRFQJT68czWmCdABj9JTsIvRHB 851yW4Wd/Zw365oWHa3TZWfdEOny X-Google-Smtp-Source: APXvYqzRpmh+S6vp5W37B1N+jkMm2Lf1AQ+BKlkdG0ujenkA7fCK06jal3AFzxGSWsWID1cPPgNT2Q== X-Received: by 2002:adf:fb48:: with SMTP id c8mr1374046wrs.247.1570553591848; Tue, 08 Oct 2019 09:53:11 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id t83sm6179564wmt.18.2019.10.08.09.53.11 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Tue, 08 Oct 2019 09:53:11 -0700 (PDT) From: zimoun To: guix-patches@gnu.org Subject: [PATCH 0/2] Add r-htqpcr and r-unifiedwmwqpcr. Date: Tue, 8 Oct 2019 18:53:07 +0200 Message-Id: <20191008165307.903-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-Received-From: 2a00:1450:4864:20::429 X-Spam-Score: 0.7 (/) X-Debbugs-Envelope-To: submit Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) Dear, These patches add two BioConductor packages. The licenses are compliant with the ones find in the file 'DESCRIPTION' but `guix build' reports: installing 0 license files from '.' All the best, simon zimoun (2): gnu: Add r-htqpcr. gnu: Add r-unifiedwmwqpcr. gnu/packages/bioconductor.scm | 59 +++++++++++++++++++++++++++++++++++ 1 file changed, 59 insertions(+) -- 2.21.0 ------------=_1571141642-6680-1--