GNU bug report logs - #36800
[PATCH 11/11] gnu: Add r-depecher.

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Message #32 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: guix-patches <at> gnu.org
Cc: 36800 <at> debbugs.gnu.org
Subject: Re: [bug#36800] [PATCH 11/11] gnu: Add r-depecher.
Date: Wed, 24 Jul 2019 22:49:44 +0200

zimoun <zimon.toutoune <at> gmail.com> writes:

> * gnu/packages/bioconductor.scm (r-depecher): New variable.

This package cannot actually be built:

--8<---------------cut here---------------start------------->8---
…
if test -e "/usr/bin/strip" & test -e "/bin/uname" & [[ `uname` == "Linux" ]] ; then /usr/bin/strip --strip-debug DepecheR.so; fi
/gnu/store/q19l04vd2za80mk1845pz7r8cz29qk43-bash-minimal-4.4.23/bin/bash: /usr/bin/strip: No such file or directory
make: *** [Makevars:6: strippedLib] Error 127
ERROR: compilation failed for package ‘DepecheR’
* removing ‘/gnu/store/pgjzdxwn0nyanx9lvp6i9rxflabh3k21-r-depecher-1.0.3/site-library/DepecheR’
Backtrace:
           4 (primitive-load "/gnu/store/f1ky8a22c7s5p053nci05a536j7…")
In ice-9/eval.scm:
   191:35  3 (_ #f)
In srfi/srfi-1.scm:
   863:16  2 (every1 #<procedure 725d80 at /gnu/store/4p2vk30zhkwxq…> …)
In /gnu/store/4p2vk30zhkwxqdkydn1572qz70jgvl55-module-import/guix/build/gnu-build-system.scm:
   799:28  1 (_ _)
In /gnu/store/4p2vk30zhkwxqdkydn1572qz70jgvl55-module-import/guix/build/utils.scm:
    616:6  0 (invoke _ . _)

/gnu/store/4p2vk30zhkwxqdkydn1572qz70jgvl55-module-import/guix/build/utils.scm:616:6: In procedure invoke:
Throw to key `srfi-34' with args `(#<condition &invoke-error [program: "R" arguments: ("CMD" "INSTALL" "--install-tests" "--library=/gnu/store/pgjzdxwn0nyanx9lvp6i9rxflabh3k21-r-depecher-1.0.3/site-library/" "--built-timestamp=1970-01-01" ".") exit-status: 1 term-signal: #f stop-signal: #f] 7c4ec0>)'.
builder for `/gnu/store/mwcdvlm6f17i81m16w131042cmvlfh5m-r-depecher-1.0.3.drv' failed with exit code 1
build of /gnu/store/mwcdvlm6f17i81m16w131042cmvlfh5m-r-depecher-1.0.3.drv failed
View build log at '/var/log/guix/drvs/mw/cdvlm6f17i81m16w131042cmvlfh5m-r-depecher-1.0.3.drv.bz2'.
guix build: error: build of `/gnu/store/mwcdvlm6f17i81m16w131042cmvlfh5m-r-depecher-1.0.3.drv' failed
--8<---------------cut here---------------end--------------->8---

I’ll modify the build phases to patch out this call to /usr/bin/strip.

-- 
Ricardo

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