From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 24 14:22:34 2019 Received: (at submit) by debbugs.gnu.org; 24 Jul 2019 18:22:34 +0000 Received: from localhost ([127.0.0.1]:37997 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuM-0005Mk-8b for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:34 -0400 Received: from lists.gnu.org ([209.51.188.17]:46489) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuH-0005La-TM for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:30 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41139) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuG-0003JC-Sm for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:29 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.8 required=5.0 tests=BAYES_50,FREEMAIL_FROM, URIBL_BLOCKED autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLuF-0007Jz-H0 for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:28 -0400 Received: from mail-wm1-x336.google.com ([2a00:1450:4864:20::336]:37215) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLuF-0007If-Af for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:27 -0400 Received: by mail-wm1-x336.google.com with SMTP id f17so42458535wme.2 for ; Wed, 24 Jul 2019 11:22:27 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=Jy5PfItzZJVOlLqCCQqbG/YxP5343aRlpYkP9syQYug=; b=m9lGmm/xWzn683krnhDieT9FvrdJYmEBju8anez8FZ/2JOpnPj4p42R6iImYPFgd7v 6l/rf2nl61VccRcdlztzzLoF7BU/geVAjnb64ORTQrEeIOyvpCY7Kr2R7LKeG9+jMHIe j1XrDb1kM2wYAixlWDYnoZfWTglxcj7tcpXuSyosToNHaT2lo7NjBdUjVRHiXeLYIk3o lSg9i5ujx4qqZkW15G7dArVS5hoj8Ont/Pm73ow7MQP9kJ5Bjr4rVIsc0UXY72ROhXCl /rffSQ7x0UTrZzrwvqfXuT5wIetHrsNFnmM2jy+tPZCLyiHeO3tiZfWTU8oZclJLYrkJ alew== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=Jy5PfItzZJVOlLqCCQqbG/YxP5343aRlpYkP9syQYug=; b=tT1vLR4rrw9bLRvAvj2chFkxVUR9j78fV+9lnphSOD84vnZEQbwgUgc2uxnSvZ6LHC t3iQRwaEnvlI+zk5J+UKDfzV3RHEMnLwIcczkhgmPFR8pFbgH+g3zFiDtST/H8xL4jrG rIcjbfSYF6+0xq2ayoyDWXjlsBjI/di2nOGWHn7yl2fBOo/5b8LK7IbEBMW6q+wf9Oen LNkBd6tc7i4GMkzMJWACfhQdGi7vWQ50tm/FWGuAfDXvo0XbtQ2jQXwh8cIPq2nYfeYf GFJDWywDKZQ8mjsOiN3+sHxTUDhdbsPCEL59bNayxxwNOLsEmDxfZu/nuRz4wfHg3p5W NiuA== X-Gm-Message-State: APjAAAWMIBKvy4oBfdymMeYkLFpuDz54PP3ksO3mv8lywqBDHiXGbTUR FM1oDAI05vgeptIn8GK80QvTn+pG X-Google-Smtp-Source: APXvYqwQ48qRtiK2RON5XQId43FA96hyYW6rs0IfMgkQVI5V0LkDH3RyjFCcTNu8yUaNx7w3GtjLWQ== X-Received: by 2002:a05:600c:2199:: with SMTP id e25mr72471457wme.72.1563992546181; Wed, 24 Jul 2019 11:22:26 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id g12sm66116616wrv.9.2019.07.24.11.22.25 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Wed, 24 Jul 2019 11:22:25 -0700 (PDT) From: zimoun To: guix-patches@gnu.org Subject: [PATCH 09/11] gnu: Add r-flowsom. Date: Wed, 24 Jul 2019 20:22:02 +0200 Message-Id: <20190724182204.6818-10-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 In-Reply-To: <20190724182204.6818-1-zimon.toutoune@gmail.com> References: <20190724182204.6818-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-Received-From: 2a00:1450:4864:20::336 X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/bioconductor.scm (r-flowsom): New variable. --- gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ab4d9f4075..dd6570ed17 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4930,3 +4930,32 @@ and to both short and long sequence reads.") "This package provides a fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.") (license license:artistic2.0))) ;TODO: artistic1.0 does not exist +(define-public r-flowsom + (package + (name "r-flowsom") + (version "1.16.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "FlowSOM" version)) + (sha256 + (base32 + "03wl3xk7g7vajc4kkrqa0gsbjfxlqr918qi849h5nir31963398l")))) + (properties `((upstream-name . "FlowSOM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-consensusclusterplus" + ,r-consensusclusterplus) + ("r-flowcore" ,r-flowcore) + ("r-flowutils" ,r-flowutils) + ("r-igraph" ,r-igraph) + ("r-tsne" ,r-tsne) + ("r-xml" ,r-xml))) + (home-page "http://www.r-project.org") + (synopsis + "Using self-organizing maps for visualization and interpretation of cytometry data") + (description + "FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.") + (license license:gpl2+))) + -- 2.21.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 24 14:36:31 2019 Received: (at control) by debbugs.gnu.org; 24 Jul 2019 18:36:31 +0000 Received: from localhost ([127.0.0.1]:38044 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqM7q-0005tE-Mh for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:36:31 -0400 Received: from tobias.gr ([80.241.217.52]:34870) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqM7o-0005t1-Oj for control@debbugs.gnu.org; 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