GNU bug report logs - #36797
[PATCH 08/11] gnu: Add r-flowpeaks.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#36800: closed ([PATCH 11/11] gnu: Add r-depecher.)
Date: Fri, 21 Feb 2020 17:08:04 +0000

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Your message dated Fri, 21 Feb 2020 18:07:33 +0100
with message-id <CAJ3okZ2GnkOKAPNwz8FwmRbZ+W+pYHiwB=xD4qocRuuwEgtM4w <at> mail.gmail.com>
and subject line patches merged
has caused the debbugs.gnu.org bug report #36797,
regarding [PATCH 11/11] gnu: Add r-depecher.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
36797: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: zimoun <zimon.toutoune <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 11/11] gnu: Add r-depecher.
Date: Wed, 24 Jul 2019 20:22:04 +0200

* gnu/packages/bioconductor.scm (r-depecher): New variable.
---
 gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 64625aedd4..7c9a3b7417 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5013,3 +5013,47 @@ data sets: N-integration with variants of Generalised Canonical Correlation
 Analysis and P-integration with variants of multi-group Partial Least
 Squares.")
     (license license:gpl2+)))
+
+(define-public r-depecher
+  (package
+    (name "r-depecher")
+    (version "1.0.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (bioconductor-uri "DepecheR" version))
+        (sha256
+          (base32
+            "0qj2h2a50fncppvi2phh0mbivxkn1mv702mqpi9mvvkf3bzq8m0h"))))
+    (properties `((upstream-name . "DepecheR")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-beanplot" ,r-beanplot)
+        ("r-biocparallel" ,r-biocparallel)
+        ("r-dosnow" ,r-dosnow)
+        ("r-dplyr" ,r-dplyr)
+        ("r-foreach" ,r-foreach)
+        ("r-ggplot2" ,r-ggplot2)
+        ("r-gplots" ,r-gplots)
+        ("r-mass" ,r-mass)
+        ("r-matrixstats" ,r-matrixstats)
+        ("r-mixomics" ,r-mixomics)
+        ("r-moments" ,r-moments)
+        ("r-rcpp" ,r-rcpp)
+        ("r-rcppeigen" ,r-rcppeigen)
+        ("r-reshape2" ,r-reshape2)
+        ("r-viridis" ,r-viridis)))
+    (home-page
+      "https://bioconductor.org/packages/DepecheR")
+    (synopsis
+      "Determination of essential phenotypic elements of clusters in high-dimensional entities")
+    (description
+     "The purpose of this package is to identify traits in a dataset that can
+separate groups.  This is done on two levels.  First, clustering is performed,
+using an implementation of sparse K-means.  Secondly, the generated clusters
+are used to predict outcomes of groups of individuals based on their
+distribution of observations in the different clusters.  As certain clusters
+with separating information will be identified, and these clusters are defined
+by a sparse number of variables, this method can reduce the complexity of
+data, to only emphasize the data that actually matters.")
+    (license license:expat)))
-- 
2.21.0

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 36797-done <at> debbugs.gnu.org
Subject: patches merged
Date: Fri, 21 Feb 2020 18:07:33 +0100

Dear,

All the patches are merged now; except r-flowpeaks. Because this
package use Artistic1.0 which is not enough clear to be considered
"free" [1,2] (GNU's point of view [3]) and upstream are not
responsive, let clean the bug tracker. :-)

[1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16
[2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html
[3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense

All the best,
simon

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