GNU bug report logs - #36797
[PATCH 08/11] gnu: Add r-flowpeaks.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#36794: closed ([PATCH 05/11] gnu: Add r-flowutils.)
Date: Fri, 21 Feb 2020 17:08:03 +0000

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Your message dated Fri, 21 Feb 2020 18:07:33 +0100
with message-id <CAJ3okZ2GnkOKAPNwz8FwmRbZ+W+pYHiwB=xD4qocRuuwEgtM4w <at> mail.gmail.com>
and subject line patches merged
has caused the debbugs.gnu.org bug report #36797,
regarding [PATCH 05/11] gnu: Add r-flowutils.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
36797: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: zimoun <zimon.toutoune <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 05/11] gnu: Add r-flowutils.
Date: Wed, 24 Jul 2019 20:21:58 +0200

* gnu/packages/bioconductor.scm (r-flowutils): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3a38042537..d79ff729fc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4800,6 +4800,33 @@ gene fusion discovery.  It can be applied to all major sequencing techologies
 and to both short and long sequence reads.")
     (license license:gpl3)))
 
+(define-public r-flowutils
+  (package
+    (name "r-flowutils")
+    (version "1.48.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (bioconductor-uri "flowUtils" version))
+        (sha256
+          (base32
+            "1r7b0rszdzjq7jphh65p5m4x5ps0zbbagxl26gn2mapbjdyb47rm"))))
+    (properties `((upstream-name . "flowUtils")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-biobase" ,r-biobase)
+        ("r-corpcor" ,r-corpcor)
+        ("r-flowcore" ,r-flowcore)
+        ("r-graph" ,r-graph)
+        ("r-runit" ,r-runit)
+        ("r-xml" ,r-xml)))
+    (home-page
+      "https://github.com/jspidlen/flowUtils")
+    (synopsis "Utilities for flow cytometry")
+    (description
+      "Provides utilities for flow cytometry data.")
+    (license license:artistic2.0)))
+
 (define-public r-flowcore
   (package
     (name "r-flowcore")
-- 
2.21.0

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From: zimoun <zimon.toutoune <at> gmail.com>
To: 36797-done <at> debbugs.gnu.org
Subject: patches merged
Date: Fri, 21 Feb 2020 18:07:33 +0100

Dear,

All the patches are merged now; except r-flowpeaks. Because this
package use Artistic1.0 which is not enough clear to be considered
"free" [1,2] (GNU's point of view [3]) and upstream are not
responsive, let clean the bug tracker. :-)

[1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16
[2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html
[3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense

All the best,
simon

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