From unknown Fri Jun 20 07:14:50 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#36797 <36797@debbugs.gnu.org> To: bug#36797 <36797@debbugs.gnu.org> Subject: Status: [PATCH 08/11] gnu: Add r-flowpeaks. Reply-To: bug#36797 <36797@debbugs.gnu.org> Date: Fri, 20 Jun 2025 14:14:50 +0000 retitle 36797 [PATCH 08/11] gnu: Add r-flowpeaks. reassign 36797 guix-patches submitter 36797 zimoun severity 36797 normal tag 36797 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 24 14:22:34 2019 Received: (at submit) by debbugs.gnu.org; 24 Jul 2019 18:22:34 +0000 Received: from localhost ([127.0.0.1]:37995 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuL-0005Mc-PM for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:34 -0400 Received: from lists.gnu.org ([209.51.188.17]:46513) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuG-0005LT-OL for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:28 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41121) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuF-0003J5-Hb for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:28 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.8 required=5.0 tests=BAYES_50,FREEMAIL_FROM, URIBL_BLOCKED autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLuE-0007IU-Gy for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:27 -0400 Received: from mail-wr1-x436.google.com ([2a00:1450:4864:20::436]:44509) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLuE-0007HO-B6 for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:26 -0400 Received: by mail-wr1-x436.google.com with SMTP id p17so47980433wrf.11 for ; Wed, 24 Jul 2019 11:22:26 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=4S+Veqfm6npZSUj8Yx0luhGHLFkIFmWE+cqCRUN3qhs=; b=iDV2GYp7W51EI4bxEMsoW6UwQkUSpzQUAQVK/aRGqgsvSwg2wpmZthZAX7oR8KsmGl z4AT0inmfNoky032YuXIdWTPtN1+pPWFmYQ45t2wwgLNM1zRvgHyxpZDPS2e9ZZXcI6g 3c/U6t+ibWfcElrnLIWjbi4Nbdv8bMtJQDQTO4L+qanSMRYw3Ws6Kj3AepdrqJPk9gSG cy8TR2wFcsWUBNHwNzFd1/Ahy4sKdrVM2s3gMONKaGhDAeAbQfUZXE1xI6nb8wyI/dQb PPshM1//9hH0wuHCz+GaTgqcHRNOJuAipKg651xOmpZQ50EPCX4n8D64VhB3uoZmqbZD 0y9A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=4S+Veqfm6npZSUj8Yx0luhGHLFkIFmWE+cqCRUN3qhs=; b=HfJ+GGSef49HFIs51BbECV6+Uj4DJDpA7rpYIMLv71+bqY8n/ZCHLsVpOwn6pjOano 0SSpDb85/hDHxV1AuV+WvmwNsJz8gHMLFjzveXT81tky2/yOp9R54YAQFPC7C7GfiBvl +4GLfB/JGBnCXRDfZHAp/M9foXccaV/038BTNwSUj8nP7lOk0mZmEliNgNbaHV3jJZJT 3A0FMrDl23l+8iWNali6+mqeuCZuGKVhT8l2u8QJckSEh5+9g6DJPGP035OYFWZcKno8 BnmYnnZz3Tu0Jo98pa97H9gAvqWbJSNtsMdcgy0Wu60Crk3hTMWmu8Q0KKGE5nPfSlEP bOEw== X-Gm-Message-State: APjAAAV6hjK2MtKmMx2YHzDN3N5qJtEj4ffR9+M/Fz5BsJw/cJ27Y8r6 0i0GeT9TSniUxM/uIpLGqj7rtFgy X-Google-Smtp-Source: APXvYqwd+3sdFWK0fNREs4/OvU/T3Ar2hlq3Wx+JFBQIIu/56Bg8qBuTO2LAKV9l8PNSMiKx20e6Zw== X-Received: by 2002:adf:ea88:: with SMTP id s8mr82370761wrm.68.1563992545301; Wed, 24 Jul 2019 11:22:25 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id g12sm66116616wrv.9.2019.07.24.11.22.24 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Wed, 24 Jul 2019 11:22:24 -0700 (PDT) From: zimoun To: guix-patches@gnu.org Subject: [PATCH 08/11] gnu: Add r-flowpeaks. Date: Wed, 24 Jul 2019 20:22:01 +0200 Message-Id: <20190724182204.6818-9-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 In-Reply-To: <20190724182204.6818-1-zimon.toutoune@gmail.com> References: <20190724182204.6818-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-Received-From: 2a00:1450:4864:20::436 X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/bioconductor.scm (r-flowpeaks): New variable. --- gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0f023665c2..ab4d9f4075 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4907,3 +4907,26 @@ and to both short and long sequence reads.") (description "Identifies cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection. Note: R 2.11.0 or newer is required.") (license license:artistic2.0))) + +(define-public r-flowpeaks + (package + (name "r-flowpeaks") + (version "1.30.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "flowPeaks" version)) + (sha256 + (base32 + "1ncz7n6n39svi444yy29ip53398392s3m6z0h2a77rhcnzg456wy")))) + (properties `((upstream-name . "flowPeaks"))) + (build-system r-build-system) + (inputs `(("gsl" ,gsl))) + (home-page + "https://bioconductor.org/packages/flowPeaks") + (synopsis + "An R package for flow data clustering") + (description + "This package provides a fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.") + (license license:artistic2.0))) ;TODO: artistic1.0 does not exist + -- 2.21.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 24 14:36:31 2019 Received: (at control) by debbugs.gnu.org; 24 Jul 2019 18:36:31 +0000 Received: from localhost ([127.0.0.1]:38044 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqM7q-0005tE-Mh for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:36:31 -0400 Received: from tobias.gr ([80.241.217.52]:34870) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqM7o-0005t1-Oj for control@debbugs.gnu.org; Wed, 24 Jul 2019 14:36:29 -0400 Received: by tobias.gr (OpenSMTPD) with ESMTP id 65ffc8bb for ; 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i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; l=416; bh=BbtTGoDWNvc/O9SZxj8c7Mo7/0cKw3v+E8Uw5jNkjUY=; b=BhgEtpQCZTWxQv8uQzbSaz0VkRYFeVGONelAj4GVCGOlpURqHs/0YRX+ixyZ795/ 7ofGKJnqgKHidWvMF0SE2GaIYYhtu+94CICHfagqY6lS1YvDNAnQyt3SMbXmyKk+woQ Pp1/3RZYL+O8nQCtltcTVXMm4rLK8kVC95NbB7K4= Received: from localhost (p54AD48C4.dip0.t-ipconnect.de [84.173.72.196]) by mx.zohomail.com with SMTPS id 1564001467619383.5697228292387; Wed, 24 Jul 2019 13:51:07 -0700 (PDT) References: <20190724182204.6818-1-zimon.toutoune@gmail.com> <20190724182204.6818-9-zimon.toutoune@gmail.com> User-agent: mu4e 1.2.0; emacs 26.2 From: Ricardo Wurmus To: zimon.toutoune@gmail.com Subject: Re: [bug#36797] [PATCH 08/11] gnu: Add r-flowpeaks. In-reply-to: <20190724182204.6818-9-zimon.toutoune@gmail.com> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Wed, 24 Jul 2019 22:51:04 +0200 Message-ID: <87tvbb9mx3.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 36797 Cc: 36797@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) zimoun writes: > * gnu/packages/bioconductor.scm (r-flowpeaks): New variable. [=E2=80=A6] > + (license license:artistic2.0))) ;TODO: artistic1.0 does not exist Unfortunately, version 1.0 of the Artistic License is too unclear to be considered a free license. I have excluded this package from the set of patches that I=E2=80=99ll apply to the master branch. --=20 Ricardo From debbugs-submit-bounces@debbugs.gnu.org Fri Feb 21 12:07:52 2020 Received: (at 36797-done) by debbugs.gnu.org; 21 Feb 2020 17:07:52 +0000 Received: from localhost ([127.0.0.1]:47963 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1j5BmK-0001jl-0U for submit@debbugs.gnu.org; Fri, 21 Feb 2020 12:07:52 -0500 Received: from mail-qv1-f47.google.com ([209.85.219.47]:32976) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1j5BmI-0001jT-Ax for 36797-done@debbugs.gnu.org; Fri, 21 Feb 2020 12:07:50 -0500 Received: by mail-qv1-f47.google.com with SMTP id ek2so1307297qvb.0 for <36797-done@debbugs.gnu.org>; Fri, 21 Feb 2020 09:07:50 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=mime-version:from:date:message-id:subject:to; bh=89FU/LZLfY9nYtoc9Xp5IIFzSE8fp03TqDVIpr+1YkE=; b=Z01QM3huQL9maU2X2ZyEekh9Spe6h2m0PxZhm5NjuB8wMIb4Yi2gbzMHFMwthKoXF4 /1HWoDul5PcvCwKKIdGsLI3YJtJaTB9Pr9ngBQJhEyJruhfE/042gjRVqFeuw4Pghng/ 47CPvu4/jJ3MdBoRE9F5IM9U+hzit22LSONTunmMdsGzqI9zc61qRGKIBVXcDYF7F2qt DAabKhog6GFz/I50mHwRh4WDq/LEH7jDYNuvlEvtt5vp4B9+lJkc27Dtfbaz/44W6hHs VRCV5eQ/z4xPFYrA3qP8863JcNduWzRTHy0EKcaoao8/fO+tOnqtThyaPKqhC8++kiGN 5AUA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:from:date:message-id:subject:to; bh=89FU/LZLfY9nYtoc9Xp5IIFzSE8fp03TqDVIpr+1YkE=; b=SepEQHm5QaG2Ym2y6vKSZZliu6ghSR+KFD9aB7jBduDwwndxmCAM3IJ6h/G4WnLBxd r+msMiEXUV+iQNNehTKqkZ3WYc+wt/E8iFHmmeH7MC8VRhhZlmAwsY4DfRO4Iogklw5P DXS6LbuCMAo14pNDBS3i+C7/7y3ZAxnUPRNr1IoLyLGECzXdjH0GixopcZKeS1f93G4n 10e8ItBRcbar4LubWF86ovfLZ1VRQi46bLAL6+DChK6YTDz3a9sIRoEvMhE0Kvyz7plT 1zenVSn2iH1+au6Y9nI3Y0P+bsJInxdySkxItBvVgL6iXYISV3VCtXr02pGf+pxQCDQs IpmQ== X-Gm-Message-State: APjAAAX37rTuJiQ3nxUTmi64jayWynzOed6ye/ZiAgk679Lt8LT6A4Ct 06kVm0XJdtvJm6+ONW2Rjhln2iZFuLB0c3qVJL1xZ/11 X-Google-Smtp-Source: APXvYqzVjAfvguWHSmIcZihj89aJNHlmJ2CHns1pYWbiVmnbLtc50tH9CRCYbwoBvbsODKnoh5LzQJ7sawXm59fonmk= X-Received: by 2002:ad4:46ce:: with SMTP id g14mr31769085qvw.67.1582304864628; Fri, 21 Feb 2020 09:07:44 -0800 (PST) MIME-Version: 1.0 From: zimoun Date: Fri, 21 Feb 2020 18:07:33 +0100 Message-ID: Subject: patches merged To: 36797-done@debbugs.gnu.org Content-Type: text/plain; charset="UTF-8" X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 36797-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Dear, All the patches are merged now; except r-flowpeaks. Because this package use Artistic1.0 which is not enough clear to be considered "free" [1,2] (GNU's point of view [3]) and upstream are not responsive, let clean the bug tracker. :-) [1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16 [2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html [3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense All the best, simon From unknown Fri Jun 20 07:14:50 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 21 Mar 2020 11:24:03 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator