Subject: bug#36796: closed (patches merged)

From: [email-masked] (GNU bug Tracking System)
Date: Fri, 21 Feb 2020 17:08:04 +0000

Your bug report

#36797: [PATCH 07/11] gnu: Add r-flowmeans.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
36797: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: patches merged
From: zimoun <[email-masked]>
To: [email-masked]
Date: Fri, 21 Feb 2020 18:07:33 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

Dear,

All the patches are merged now; except r-flowpeaks. Because this
package use Artistic1.0 which is not enough clear to be considered
"free" [1,2] (GNU's point of view [3]) and upstream are not
responsive, let clean the bug tracker. :-)

[1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16
[2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html
[3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense

All the best,
simon

Subject: [PATCH 07/11] gnu: Add r-flowmeans.
From: zimoun <[email-masked]>
To: [email-masked]
Cc: zimoun <[email-masked]>
Date: Wed, 24 Jul 2019 20:22:00 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/bioconductor.scm (r-flowmeans): New variable.
---
 gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d5bd512972..0f023665c2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4881,3 +4881,29 @@ and to both short and long sequence reads.")
     (description
       "Provides S4 data structures and basic functions to deal with flow cytometry data.")
     (license license:artistic2.0)))
+
+(define-public r-flowmeans
+  (package
+    (name "r-flowmeans")
+    (version "1.44.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (bioconductor-uri "flowMeans" version))
+        (sha256
+          (base32
+            "0yp6y3mq5h4nf1d7ybqnriigwfmwanrqavpj3ry482sgiaip1hp2"))))
+    (properties `((upstream-name . "flowMeans")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-biobase" ,r-biobase)
+        ("r-feature" ,r-feature)
+        ("r-flowcore" ,r-flowcore)
+        ("r-rrcov" ,r-rrcov)))
+    (home-page
+      "https://bioconductor.org/packages/flowMeans")
+    (synopsis
+      "Non-parametric Flow Cytometry Data Gating")
+    (description
+      "Identifies cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection.  Note: R 2.11.0 or newer is required.")
+    (license license:artistic2.0)))
-- 
2.21.0