Subject: bug#36790: closed (patches merged)

From: [email-masked] (GNU bug Tracking System)
Date: Fri, 21 Feb 2020 17:08:02 +0000

Your bug report

#36797: [PATCH 01/11] gnu: Add r-umap.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
36797: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: patches merged
From: zimoun <[email-masked]>
To: [email-masked]
Date: Fri, 21 Feb 2020 18:07:33 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

Dear,

All the patches are merged now; except r-flowpeaks. Because this
package use Artistic1.0 which is not enough clear to be considered
"free" [1,2] (GNU's point of view [3]) and upstream are not
responsive, let clean the bug tracker. :-)

[1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16
[2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html
[3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense

All the best,
simon

Subject: [PATCH 01/11] gnu: Add r-umap.
From: zimoun <[email-masked]>
To: [email-masked]
Cc: zimoun <[email-masked]>
Date: Wed, 24 Jul 2019 20:21:54 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/cran.scm (r-umap): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3f0d819df7..768a7d09c5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14530,3 +14530,30 @@ including regression, classification and ranking.  The package is made to be
 extensible, so that users are also allowed to define their own objectives
 easily.")
     (license license:asl2.0)))
+
+(define-public r-umap
+  (package
+    (name "r-umap")
+    (version "0.2.2.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "umap" version))
+        (sha256
+          (base32
+            "1s82w9gy1387h7cprjfbhp49l89zbmn3gc9s0wzqb1s73nza9n31"))))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-rcpp" ,r-rcpp)
+        ("r-reticulate" ,r-reticulate)
+        ("r-rspectra" ,r-rspectra)))
+    (home-page "https://github.com/tkonopka/umap")
+    (synopsis
+      "Uniform Manifold Approximation and Projection")
+    (description
+      "Uniform manifold approximation and projection is a technique for
+dimension reduction.  The algorithm was described by McInnes and Healy (2018)
+in <arXiv:1802.03426>.  This package provides an interface to the UMAP
+algorithm in R, including a translation of the original algorithm into R with
+minimal dependencies.")
+    (license license:expat)))
-- 
2.21.0