From unknown Fri Jun 20 07:12:43 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#36795 <36795@debbugs.gnu.org> To: bug#36795 <36795@debbugs.gnu.org> Subject: Status: [PATCH 06/11] gnu: Add r-consensusclusterplus. Reply-To: bug#36795 <36795@debbugs.gnu.org> Date: Fri, 20 Jun 2025 14:12:43 +0000 retitle 36795 [PATCH 06/11] gnu: Add r-consensusclusterplus. reassign 36795 guix-patches submitter 36795 zimoun severity 36795 normal tag 36795 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 24 14:22:33 2019 Received: (at submit) by debbugs.gnu.org; 24 Jul 2019 18:22:33 +0000 Received: from localhost ([127.0.0.1]:37991 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuK-0005ML-QO for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:33 -0400 Received: from lists.gnu.org ([209.51.188.17]:42064) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuF-0005LG-7A for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:27 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41096) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuE-0003Ix-6a for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:27 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.8 required=5.0 tests=BAYES_50,FREEMAIL_FROM, URIBL_BLOCKED autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLuD-0007GU-4l for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:26 -0400 Received: from mail-wr1-x42e.google.com ([2a00:1450:4864:20::42e]:39999) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLuC-0007Eu-Ut for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:25 -0400 Received: by mail-wr1-x42e.google.com with SMTP id r1so47997542wrl.7 for ; Wed, 24 Jul 2019 11:22:24 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=24W40LvZghPcbKV/H18xen7gsRhPS5H4z1oHo7bo37o=; b=rnqbXAjUbGifnfSO2GeQGZh0dc4in9l2FFDzbMa2r4+No3iWfFlW5kDSK6zMOmgtW3 2SMnZYV32ponjO/9S3WMrTgZZW3TKj4vKT4TA+OGqPVCsQ1Kg/CCrAgV51LJK+EL2pVb cl24I9l58S9hW8+IEZdFFQpSsJBtn4bLc2hnYKPB7QwnLTbuHGXvcXIRuSnwsn6wg0xw CKaCaxReizbyFrqw+dZBWZlq7BHHAEUibamWkZ+gsjagf9A9YRWbwwaoKCFu2Mz/vNMO 2ILflRcwss1a3vBgqXZOJRwqeeQP6EK/MvHX/VMjFqxFDsTVNvuDJG3/uJOprycZTT9w vTbQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=24W40LvZghPcbKV/H18xen7gsRhPS5H4z1oHo7bo37o=; b=SIN8y4AD5vmwGOSqg6BYKYwOO3Bat+E6o7eBKJ0ikn4zdU3Jmj11ZqlmS/vkLTXlc7 CZFhqzi/V+vj0RzPAAzwf4mSFwLj2AlCumAIucL/vzR+yQF+oIk3+/1xk9A/Wcd4qjUm 0PMwv9ppAz1eIl4igDEPm9dRvEi0571rA/08p13G89s3ERE8fYbAn0qas1lSkc1ZJzXb gfcq4YDbwbB/xUYaUq14h96eG+L9qxdwp1Y9Zu23Jf1lY9wxAm6MM10NgumSP9llRH+w F86v+QC/uJJpCLUuyk2ICKqeSMgzax+I44cgwh/1mz681GFFHcgnMftPc/Msoi7SYwvi KdcA== X-Gm-Message-State: APjAAAXTDYOX7U62k1YMrKv+k/n+FLIJscrU9reWMjLutN92HPDg3f0Q aDAKjFMkKQFHSwy2hCdzY/qtD6mh X-Google-Smtp-Source: APXvYqwCXWThIC3B+SGJ91uJCfiUoKLOXuqkMDur6pAOubKmN3dlEbtcvfcg0Cj8OD6alf5bvtf3oQ== X-Received: by 2002:a5d:618d:: with SMTP id j13mr88213012wru.195.1563992543841; Wed, 24 Jul 2019 11:22:23 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id g12sm66116616wrv.9.2019.07.24.11.22.22 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Wed, 24 Jul 2019 11:22:23 -0700 (PDT) From: zimoun To: guix-patches@gnu.org Subject: [PATCH 06/11] gnu: Add r-consensusclusterplus. Date: Wed, 24 Jul 2019 20:21:59 +0200 Message-Id: <20190724182204.6818-7-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 In-Reply-To: <20190724182204.6818-1-zimon.toutoune@gmail.com> References: <20190724182204.6818-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-Received-From: 2a00:1450:4864:20::42e X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/bioconductor.scm (r-consensusclusterplus): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d79ff729fc..d5bd512972 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4827,6 +4827,31 @@ and to both short and long sequence reads.") "Provides utilities for flow cytometry data.") (license license:artistic2.0))) +(define-public r-consensusclusterplus + (package + (name "r-consensusclusterplus") + (version "1.48.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ConsensusClusterPlus" version)) + (sha256 + (base32 + "1mlcm3wq5n8s0gxs35j0ph9576fhbrbrrsj2xy84fy20prcfs4w8")))) + (properties + `((upstream-name . "ConsensusClusterPlus"))) + (build-system r-build-system) + (propagated-inputs + `(("r-all" ,r-all) + ("r-biobase" ,r-biobase) + ("r-cluster" ,r-cluster))) + (home-page + "https://bioconductor.org/packages/ConsensusClusterPlus") + (synopsis "Clustering algorithm") + (description + "Algorithm for determining cluster count and membership by stability evidence in unsupervised analysis.") + (license license:gpl2))) + (define-public r-flowcore (package (name "r-flowcore") -- 2.21.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 24 14:36:31 2019 Received: (at control) by debbugs.gnu.org; 24 Jul 2019 18:36:31 +0000 Received: from localhost ([127.0.0.1]:38044 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqM7q-0005tE-Mh for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:36:31 -0400 Received: from tobias.gr ([80.241.217.52]:34870) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqM7o-0005t1-Oj for control@debbugs.gnu.org; Wed, 24 Jul 2019 14:36:29 -0400 Received: by tobias.gr (OpenSMTPD) with ESMTP id 65ffc8bb for ; 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