From unknown Fri Jun 20 07:17:53 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#36793 <36793@debbugs.gnu.org> To: bug#36793 <36793@debbugs.gnu.org> Subject: Status: [PATCH 04/11] gnu: Add r-flowcore. Reply-To: bug#36793 <36793@debbugs.gnu.org> Date: Fri, 20 Jun 2025 14:17:53 +0000 retitle 36793 [PATCH 04/11] gnu: Add r-flowcore. reassign 36793 guix-patches submitter 36793 zimoun severity 36793 normal tag 36793 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 24 14:22:32 2019 Received: (at submit) by debbugs.gnu.org; 24 Jul 2019 18:22:32 +0000 Received: from localhost ([127.0.0.1]:37987 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuJ-0005Ly-Ky for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:32 -0400 Received: from lists.gnu.org ([209.51.188.17]:46301) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuD-0005L2-LJ for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:25 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41070) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuC-0003Ho-Kr for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:25 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.8 required=5.0 tests=BAYES_50,FREEMAIL_FROM, URIBL_BLOCKED autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLuB-0007Dt-JB for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:24 -0400 Received: from mail-wr1-x431.google.com ([2a00:1450:4864:20::431]:43438) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLuB-0007Cf-DF for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:23 -0400 Received: by mail-wr1-x431.google.com with SMTP id p13so47974699wru.10 for ; Wed, 24 Jul 2019 11:22:23 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=rx7LUQvIHcLh54Mlx4vy8OaM3guvdfNahu+L7Qf6kUw=; b=A5n8zr5XDapjfpVzDCP8mYd8loT2PvPW6fbEIeXtGPhXeFfLZ1SiVMXzx83h9VIkO1 qfX0dWpJLS1w3pjqLaevfq6OWGNR6aOlgwaYokYijvC13oWJj9BcTua+DErbsVl1jZT7 iq3M6h2wAjvFReeuAHDb+BBkPS/9zzXodELyiMy+053IUgiccKEQstAcj6W9FKU/X52T SPoCfLG0aTxO34zsRbVP2r2ZcUjbPUFuZgCN/3D5ndOafPM052UDlYA+u1phIoWN/cMQ AMS1gQUxFWX8OKcMityO/yZYS497/YDKgR1zfkTdJDQXVkp7iJoDdf56Yto+nfgcJ4XA qGDg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=rx7LUQvIHcLh54Mlx4vy8OaM3guvdfNahu+L7Qf6kUw=; b=qpjlcH7FpSzrwji2etpz/4/cTVzFI4mFR2hPlSQXLEP37rCbqD+pkI3YHaV4jO9mjS cWk5rCSQJT3eWTQGU8ve2ZpYogYqhBHbVwLTW8dGCyB8dB3BVrZkD7HLTnMDbPlrL29D 5RgYAQKoiA/7OE4gcoHyOU8MlFFAXu7kqoKpwS7zv9MD2ZVFtyPmdHFDtdIFeuMvOCtS 9nxHuLyRacbthrKxXQBGpxZBFAw802Z682P/eqBBQXX0fILHOmz/jXRBdoI7514WAyZb QnuNneTP59+i5F4/+fyqVcrB3IwLxu18x7rhJiIuELSmiDouQQSx6KzDgU2zPSCWkbpp Z86w== X-Gm-Message-State: APjAAAW73DPJ79W2j+zs80qecTckXwblFfYboMgiER+4LB1Jnp6aoMAd pSAs26jZhustj1n0FCpm68kFgapO X-Google-Smtp-Source: APXvYqzFM1KPSMixiABfbX8e2HxGBDpvz061d663XnYDMnnTvhFY9LggOG04MgcQ92N7Odfpm+KNYQ== X-Received: by 2002:a5d:6a84:: with SMTP id s4mr12580003wru.125.1563992542287; Wed, 24 Jul 2019 11:22:22 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id g12sm66116616wrv.9.2019.07.24.11.22.21 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Wed, 24 Jul 2019 11:22:21 -0700 (PDT) From: zimoun To: guix-patches@gnu.org Subject: [PATCH 04/11] gnu: Add r-flowcore. Date: Wed, 24 Jul 2019 20:21:57 +0200 Message-Id: <20190724182204.6818-5-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 In-Reply-To: <20190724182204.6818-1-zimon.toutoune@gmail.com> References: <20190724182204.6818-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-Received-From: 2a00:1450:4864:20::431 X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/bioconductor.scm (r-flowcore): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 18b5711496..3a38042537 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4799,3 +4799,33 @@ read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. It can be applied to all major sequencing techologies and to both short and long sequence reads.") (license license:gpl3))) + +(define-public r-flowcore + (package + (name "r-flowcore") + (version "1.50.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "flowCore" version)) + (sha256 + (base32 + "0pvcyzycsmgc8iw60q9xnhllfan6ihwpz3gvk8h1n9jmhpxzylan")))) + (properties `((upstream-name . "flowCore"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-corpcor" ,r-corpcor) + ("r-graph" ,r-graph) + ("r-mass" ,r-mass) + ("r-matrixstats" ,r-matrixstats) + ("r-rcpp" ,r-rcpp) + ("r-rrcov" ,r-rrcov))) + (home-page + "https://bioconductor.org/packages/flowCore") + (synopsis "Basic structures for flow cytometry data") + (description + "Provides S4 data structures and basic functions to deal with flow cytometry data.") + (license license:artistic2.0))) -- 2.21.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 24 14:36:31 2019 Received: (at control) by debbugs.gnu.org; 24 Jul 2019 18:36:31 +0000 Received: from localhost ([127.0.0.1]:38044 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqM7q-0005tE-Mh for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:36:31 -0400 Received: from tobias.gr ([80.241.217.52]:34870) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqM7o-0005t1-Oj for control@debbugs.gnu.org; Wed, 24 Jul 2019 14:36:29 -0400 Received: by tobias.gr (OpenSMTPD) with ESMTP id 65ffc8bb for ; Wed, 24 Jul 2019 18:36:28 +0000 (UTC) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed; d=tobias.gr; h=from:to :date:message-id:mime-version:content-type; s=2018; i= me@tobias.gr; bh=snX8gkIGwvvMEOtUu1R0ewv6IhNBYe75nf1jTlPDTEg=; b= SKr2Nv4IaVdOgC7U4A5T1waVQ3bmHeD75MNbHb6ontzKUAnC6AyGAK69j7/mLSyq n5TkkJZbjt4m+cMYNmomsc7Jb8jfsrESeUhfOx6FFLs2CiDgGn3nppkYdKFCyieN 6Dx1nzpofFJCIu8XT/N6hGOtrt0H2heZAaRoK+X/o/u9/rFUrUC3cGKJMvs5wicm +hXhxFncsAid/LS+/6qt464n6YFucXB15p9Y4vpfsrh39E2tXATEVI3jXVhsl0I3 AZoN5GIDMLw1lsqgIrZBUJcC8EjaNpNamWID3v7BJWjq/sfaCz+n/b1H1MdkLo0X 9z3P1vmgpYkapiHIfOxzSQ== Received: by submission.tobias.gr (OpenSMTPD) with ESMTPSA id aaceb1cb (TLSv1.2:ECDHE-RSA-AES256-GCM-SHA384:256:NO) for ; Wed, 24 Jul 2019 18:36:27 +0000 (UTC) From: Tobias Geerinckx-Rice To: GNU bug tracker automated control server Date: Wed, 24 Jul 2019 20:36:27 +0200 Message-ID: <87lfwni8k4.fsf@nckx> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: -0.3 (/) X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.3 (-) --=-=-= Content-Type: text/plain; format=flowed merge 36789 36790 merge 36789 36791 merge 36789 36792 merge 36789 36793 merge 36789 36794 merge 36789 36795 merge 36789 36796 merge 36789 36797 merge 36789 36798 merge 36789 36799 --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iHUEARYKAB0WIQT12iAyS4c9C3o4dnINsP+IT1VteQUCXTilKwAKCRANsP+IT1Vt efwCAPwMFfiT2lvcwMNzzwkToDSGCWdwSxssz16tTMeFjdOR8QEA/0yecSJc7Tlg WzetWDVAWg15OT5glks97g4iaGnfGQE= =Lk9Y -----END PGP SIGNATURE----- --=-=-=-- From debbugs-submit-bounces@debbugs.gnu.org Wed Jul 24 15:17:45 2019 Received: (at control) by debbugs.gnu.org; 24 Jul 2019 19:17:45 +0000 Received: from localhost ([127.0.0.1]:38063 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqMll-00010K-0r for submit@debbugs.gnu.org; Wed, 24 Jul 2019 15:17:45 -0400 Received: from mail-qt1-f173.google.com ([209.85.160.173]:43720) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqMli-0000zt-MO; Wed, 24 Jul 2019 15:17:44 -0400 Received: by mail-qt1-f173.google.com with SMTP id w17so2307554qto.10; Wed, 24 Jul 2019 12:17:42 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=mime-version:from:date:message-id:subject:to; bh=bDQgvkI2T8+iyIZGQAyrlzreGd8+BkCDJdbFMMZBigo=; b=JO3kxNT5W1OPQOxDU4duM8b06+b2Og0Ih11q4uIGsOVj2qU5T+wFqZjIGjoTBlYjYi JY59rtRKn2Hr/8I9tZw55EifR8oMLNR8oGH3UzEuyTogTP+AWBR9XSg/3w2pcisTHKcv oejXCgMjdsvfIWcyMStp/aM218rn89RSd0fWkn+aPgklxQ8eV1gS5uO/KgUUQV+KOLDB l22ag+MRzEMX4hdp9yczIpbhIqZ+wuOEidP8VNksL4W5kOtS/alqntHEAe0NanZMN69K Cj8ye9vKd3OWJVfxW21nnRDTu6/SR/DjcV/i7177Wd5gPhDUVJRnOUE5LsnQHD1oxrpm I8oA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:from:date:message-id:subject:to; bh=bDQgvkI2T8+iyIZGQAyrlzreGd8+BkCDJdbFMMZBigo=; b=V+MEbqjzqlBk5Wv++zRZ6YZB+sBxtIr1LUFZVjPoxnYkh0H1ag0HBCHndAoPQ24gjF AUxAQt7TfcDospyXJe0GbxYJbc8jnYrZ0uPOg7QBBkyQDiMMcSgJ4Vpt+mWqBTsq/4ly QR90irCF5mNbCDa1GkOqYERZnwi8EOD3l8KKg7R4ut8zzhXrTJy+lSvGPTJ0ByiUVjlM vN/1AgFqo4q1qdQefc6+9Aozwkp86VH8OkdJQwkqBGV0wSsZCj9kO2m52/Ub+wEcqP0/ JHusd8gGJ/+sOUmqYPWqhNzGiiKJ/NW4ULezrSvcQLYkdaI9cH+IN4gZqF7cT0NZJUrq fbSA== X-Gm-Message-State: APjAAAWY4LKit3ul9Nq3Y+qFtCj0h6Zq/uGSpMJdGA83UfQJ580VMQsq H2NUywcJUC9J6N7rjFyjTOZEaNksTRlNBobTeHncksah X-Google-Smtp-Source: APXvYqwSg1+YviEAu3iAD8pvdG3Tv6NLYNJlKbrruzJ8c6RTn3TEnfOadJqc96ncT77S7J9ipl9Tdt4T5MwCAmEop5c= X-Received: by 2002:a0c:f788:: with SMTP id s8mr56709342qvn.35.1563995857036; Wed, 24 Jul 2019 12:17:37 -0700 (PDT) MIME-Version: 1.0 From: zimoun Date: Wed, 24 Jul 2019 21:17:26 +0200 Message-ID: Subject: Merge 36789 36790 To: control@debbugs.gnu.org, 36789@debbugs.gnu.org, 36790@debbugs.gnu.org Content-Type: text/plain; charset="UTF-8" X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) merge 36789 36790 thanks From unknown Fri Jun 20 07:17:53 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 21 Mar 2020 11:24:03 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator