GNU bug report logs - #36623
[PATCH] gnu: gdal: add python support

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Message #29 received at 36623 <at> debbugs.gnu.org (full text, mbox):

From: Arne Babenhauserheide <arne_bab <at> web.de>
To: 宋文武 <iyzsong <at> member.fsf.org>
Cc: Ludovic Courtès <ludo <at> gnu.org>,
 Julien Lepiller <julien <at> lepiller.eu>, 36623 <at> debbugs.gnu.org
Subject: Re: [bug#36623] [PATCH] gnu: gdal: add python support
Date: Sun, 21 Jul 2019 09:48:58 +0200

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宋文武 <iyzsong <at> member.fsf.org> writes:

> Arne Babenhauserheide <arne_bab <at> web.de> writes:
>
>> Hello Ludo`,
>>
>> Ludovic Courtès <ludo <at> gnu.org> writes:
>>
>>>> validating RUNPATH of 6 binaries in "/gnu/store/q9sb0wv41ig429f1m1xspg22xm8pwpwh-gdal-2.2.4/lib"...
>>>> /gnu/store/q9sb0wv41ig429f1m1xspg22xm8pwpwh-gdal-2.2.4/lib/python3.7/site-packages/osgeo/_gdal.cpython-37m-x86_64-linux-gnu.so:
>>>> error: depends on 'libgdal.so.20', which cannot be found in RUNPATH
>>>> ("/gnu/store/b7fqhszxl02g6pfm3vw6b3cjz472qrly-python-3.7.0/lib"
>>>> "/gnu/store/h90vnqw0nwd0hhm1l5dgxsdrigddfmq4-glibc-2.28/lib"
>>>> "/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib"
>>>> "/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/../../..")
>>>
>>> I’m not familiar with Cython so I don’t know how this was handled
>>> before.  However, to me, it indicates that the resulting binaries are
>>> unlikely to work.
>>>
>>> Namely, Python would dlopen “_gdal.cython*.so”, and that would fail to
>>> find ‘libgdal.so’.
>
>>>
>>> Thoughts?
>>
>> Yes: It does work. But I don’t know why.
>
> This is because the _gdal.cython*.so don't have rpath to the "lib"
> directory, where libgdal.so will going.
>
>>
>> Cython runs at compile-time to generate c-code that acts as interface
>> for Python. Given the paths in here, this needs gdal already installed
>> in the runpath where it seems to be missing during validation.
>>
>> How can we fix that?
>
> I think cython (which compile .py files to .c files) is not here..  It
> has python C libraries generated by swig.
>>
>> Best wishes,
>> Arne
>
> In the end the python bindings for gdal can be build seperated (which
> handle the missing rpath to libgdal nicely), and I prefer this way:
>
> From 09254f646b948a5603b2b3dcb99a7f2f6ad0c8de Mon Sep 17 00:00:00 2001
> From: =?UTF-8?q?=E5=AE=8B=E6=96=87=E6=AD=A6?= <iyzsong <at> member.fsf.org>
> Date: Sat, 20 Jul 2019 22:39:33 +0800
> Subject: [PATCH] gnu: Add python-gdal.
>
> For <https://issues.guix.gnu.org/issue/36623>, thank to Arne Babenhauserheide
> for the original patch.
>
> * gnu/packages/geo.scm (python-gdal): New package.
> ---
>  gnu/packages/geo.scm | 19 +++++++++++++++++++
>  1 file changed, 19 insertions(+)
>
> diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
> index e4b6a262c7..8005c46129 100644
> --- a/gnu/packages/geo.scm
> +++ b/gnu/packages/geo.scm
> @@ -604,6 +604,25 @@ utilities for data translation and processing.")
>                 ;; frmts/mrf/libLERC
>                 license:asl2.0))))
>  
> +(define-public python-gdal
> +  (package (inherit gdal)
> +    (name "python-gdal")
> +    (build-system python-build-system)
> +    (arguments
> +     '(#:tests? #f                      ; no tests
> +       #:phases
> +       (modify-phases %standard-phases
> +         (add-before 'build 'chdir
> +           (lambda _
> +             (chdir "swig/python")
> +             #t)))))
> +    (native-inputs '())
> +    (propagated-inputs
> +     `(("python-numpy" ,python-numpy)))
> +    (inputs
> +     `(("gdal" ,gdal)))
> +    (synopsis "GDAL (Geospatial Data Abstraction Library) python bindings")))
> +
>  (define-public postgis
>    (package
>      (name "postgis")

Wow, that looks pretty good!

Thank you for fixing up my patch!

Best wishes,
Arne
-- 
Unpolitisch sein
heißt politisch sein
ohne es zu merken

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