GNU bug report logs - #35441
r-minimal is not reproducible

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
Subject: bug#35441: closed (r-minimal is not reproducible)
Date: Tue, 28 Apr 2020 09:23:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#35441: r-minimal is not reproducible

which was filed against the guix package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 35441 <at> debbugs.gnu.org.

-- 
35441: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=35441
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
To: <35441-done <at> debbugs.gnu.org>
Subject: r-minimal is not reproducible
Date: Tue, 28 Apr 2020 11:22:24 +0200

With the upgrade to R 4.0.0 r-minimal is now reproducible.  This is not
because R 4.0.0 fixed anything but because more package meta data files
had become irreproducible.

I noticed that setting LC_ALL to C during the build ensures that package
meta data files are generated reproducibly.

Closing!

--
Ricardo

[Message part 3 (message/rfc822, inline)]

From: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
To: <bug-guix <at> gnu.org>
Subject: r-minimal is not reproducible
Date: Fri, 26 Apr 2019 21:02:08 +0200

R has a bizzare reproducibility problem:

--8<---------------cut here---------------start------------->8---
diffoscope /gnu/store/m317mg8faxp9qn949dnv1xgsxyw57s3x-r-minimal-3.6.0/lib/R/library/methods/Meta/package.rds /gnu/store/m317mg8faxp9qn949dnv1xgsxyw57s3x-r-minimal-3.6.0-check/lib/R/library/methods/Meta/package.rds
--- /gnu/store/m317mg8faxp9qn949dnv1xgsxyw57s3x-r-minimal-3.6.0/lib/R/library/methods/Meta/package.rds
+++ /gnu/store/m317mg8faxp9qn949dnv1xgsxyw57s3x-r-minimal-3.6.0-check/lib/R/library/methods/Meta/package.rds
├── package.rds-content
│ @@ -16,17 +16,17 @@
│  000000f0: 636c 6173 7365 7320 666f 7220 5220 6f62  classes for R ob
│  00000100: 6a65 6374 732c 0a20 2070 6c75 7320 6f74  jects,.  plus ot
│  00000110: 6865 7220 7072 6f67 7261 6d6d 696e 6720  her programming
│  00000120: 746f 6f6c 732c 2061 7320 6465 7363 7269  tools, as descri
│  00000130: 6265 6420 696e 2074 6865 2072 6566 6572  bed in the refer
│  00000140: 656e 6365 2e00 0400 0900 0000 584a 6f68  ence........XJoh
│  00000150: 6e20 4d2e 2043 6861 6d62 6572 7320 2832  n M. Chambers (2
│ -00000160: 3030 3829 2060 6053 6f66 7477 6172 6520  008) ``Software
│ +00000160: 3030 3829 0a60 6053 6f66 7477 6172 6520  008).``Software
│  00000170: 666f 7220 4461 7461 2041 6e61 6c79 7369  for Data Analysi
│ -00000180: 733a 0a50 726f 6772 616d 6d69 6e67 2077  s:.Programming w
│ +00000180: 733a 2050 726f 6772 616d 6d69 6e67 2077  s: Programming w
│  00000190: 6974 6820 5227 273b 2053 7072 696e 6765  ith R''; Springe
│  000001a0: 7220 4e59 2e00 0400 0900 0000 0f50 6172  r NY.........Par
│  000001b0: 7420 6f66 2052 2033 2e36 2e30 0004 0009  t of R 3.6.0....
│  000001c0: 0000 0009 636f 6465 746f 6f6c 7300 0400  ....codetools...
│  000001d0: 0900 0000 0379 6573 0004 0009 0000 0033  .....yes.......3
│  000001e0: 5220 332e 362e 303b 2078 3836 5f36 342d  R 3.6.0; x86_64-
│  000001f0: 756e 6b6e 6f77 6e2d 6c69 6e75 782d 676e  unknown-linux-gn
--8<---------------cut here---------------end--------------->8---


--
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.