GNU bug report logs - #34935
nanopolish is not reproducible

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#34935: closed (nanopolish is not reproducible)
Date: Wed, 13 Jan 2021 15:54:02 +0000

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Your message dated Wed, 13 Jan 2021 10:53:22 -0500
with message-id <87pn28n899.fsf <at> gmail.com>
and subject line Re: bug#34935: nanopolish is not reproducible
has caused the debbugs.gnu.org bug report #34935,
regarding nanopolish is not reproducible
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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34935: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=34935
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From: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
To: bug-guix <bug-guix <at> gnu.org>
Subject: nanopolish is not reproducible
Date: Wed, 20 Mar 2019 23:11:41 -0400

$ guix build --check --no-grafts nanopolish
[...]
guix build: error: derivation `/gnu/store/7hzcmcwlw83f0wsqmz9nnl1ah54kwks4-nanopolish-0.10.2-1.50e8b5c.drv' may not be deterministic: output `/gnu/store/m7icaq7642zy0gvnqvymcnn8d088a9s0-nanopolish-0.10.2-1.50e8b5c' differs

$ diffoscope "$(guix build nanopolish)" /gnu/store/m7icaq7642zy0gvnqvymcnn8d088a9s0-nanopolish-0.10.2-1.50e8b5c

--8<---------------cut here---------------start------------->8---
│ │ │ - 0x000000000000001d (RUNPATH)            Library runpath: [/gnu/store/h90vnqw0nwd0hhm1l5dgxsdrigddfmq4-glibc-2.28/lib:/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib:/gnu/store/nq4lsyipmfb0q7g26ra45rwwqrh3x8zw-zlib-1.2.11/lib:/gnu/store/36i633snnhx4mgbnmm5rbkgk3qdi32ka-hdf5-1.8.21/lib:/gnu/store/x4xpcpsqmini25gkrc0h945ml9r609v5-htslib-1.9/lib:/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/../../..]
│ │ │ + 0x000000000000001d (RUNPATH)            Library runpath: [/gnu/store/h90vnqw0nwd0hhm1l5dgxsdrigddfmq4-glibc-2.28/lib:/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib:/gnu/store/nq4lsyipmfb0q7g26ra45rwwqrh3x8zw-zlib-1.2.11/lib:/gnu/store/36i633snnhx4mgbnmm5rbkgk3qdi32ka-hdf5-1.8.21/lib:/gnu/store/d25i834bs8wvg8mh36bplxg61r6b7vz9-htslib-1.9/lib:/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/../../..]
--8<---------------cut here---------------end--------------->8---

The problem seems to lie in htslib.

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From: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
To: 34935-done <at> debbugs.gnu.org
Subject: Re: bug#34935: nanopolish is not reproducible
Date: Wed, 13 Jan 2021 10:53:22 -0500

This is no longer an issue.

Closing.

Maxim

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