From unknown Sun Jun 22 07:57:40 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#34647] [PATCH] gnu: python-petsc4py: Update to 10.3.1. Resent-From: Paul Garlick Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 25 Feb 2019 13:28:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 34647 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 34647@debbugs.gnu.org Cc: Paul Garlick X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.15511012587878 (code B ref -1); Mon, 25 Feb 2019 13:28:01 +0000 Received: (at submit) by debbugs.gnu.org; 25 Feb 2019 13:27:38 +0000 Received: from localhost ([127.0.0.1]:50941 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gyGIE-000230-DL for submit@debbugs.gnu.org; Mon, 25 Feb 2019 08:27:38 -0500 Received: from eggs.gnu.org ([209.51.188.92]:54375) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gyGIC-00022m-1W for submit@debbugs.gnu.org; Mon, 25 Feb 2019 08:27:36 -0500 Received: from lists.gnu.org ([209.51.188.17]:45308) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1gyGI2-0003Xd-2J for submit@debbugs.gnu.org; Mon, 25 Feb 2019 08:27:27 -0500 Received: from eggs.gnu.org ([209.51.188.92]:40511) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gyGI1-0000tJ-AJ for guix-patches@gnu.org; Mon, 25 Feb 2019 08:27:25 -0500 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.1 required=5.0 tests=BAYES_50,RCVD_IN_DNSWL_LOW autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gyGHo-0003V3-SL for guix-patches@gnu.org; Mon, 25 Feb 2019 08:27:17 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:19392) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1gyGHm-0003Pb-6k for guix-patches@gnu.org; Mon, 25 Feb 2019 08:27:10 -0500 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gyGHf-00022A-CI; Mon, 25 Feb 2019 13:27:04 +0000 From: Paul Garlick Date: Mon, 25 Feb 2019 13:26:09 +0000 Message-Id: <1551101169-7293-1-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x (no timestamps) [generic] X-Received-From: 85.233.160.19 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Spam-Score: -0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/maths.scm (python-petsc4py): Update to 10.3.1. --- gnu/packages/maths.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 74554e2..a39323e 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1797,14 +1797,14 @@ scientific applications modeled by partial differential equations.") (define-public python-petsc4py (package (name "python-petsc4py") - (version "3.10.0") + (version "3.10.1") (source (origin (method url-fetch) (uri (pypi-uri "petsc4py" version)) (sha256 (base32 - "0ch3g6dsvxl7qi984fcssv7cxfbif4bw04gkvxl2l1b8wrmvrm25")))) + "094hcnran0r2z1wlvmjswsz3ski1m9kqrl5l0ax8jjhnk55x0flh")))) (build-system python-build-system) (arguments `(#:phases -- 1.8.3.1 From unknown Sun Jun 22 07:57:40 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#34647] [PATCH] gnu: python-petsc4py: Update to 10.3.1. Resent-From: Leo Famulari Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 26 Feb 2019 01:56:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 34647 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Paul Garlick Cc: 34647@debbugs.gnu.org Received: via spool by 34647-submit@debbugs.gnu.org id=B34647.15511461523871 (code B ref 34647); Tue, 26 Feb 2019 01:56:02 +0000 Received: (at 34647) by debbugs.gnu.org; 26 Feb 2019 01:55:52 +0000 Received: from localhost ([127.0.0.1]:52018 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gyRyJ-00010M-Ja for submit@debbugs.gnu.org; Mon, 25 Feb 2019 20:55:52 -0500 Received: from out2-smtp.messagingengine.com ([66.111.4.26]:39845) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gyRyH-000104-B6 for 34647@debbugs.gnu.org; Mon, 25 Feb 2019 20:55:50 -0500 Received: from compute4.internal (compute4.nyi.internal [10.202.2.44]) by mailout.nyi.internal (Postfix) with ESMTP id DFD7C22121; Mon, 25 Feb 2019 20:55:43 -0500 (EST) Received: from mailfrontend2 ([10.202.2.163]) by compute4.internal (MEProxy); Mon, 25 Feb 2019 20:55:43 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=famulari.name; h=date:from:to:cc:subject:message-id:references:mime-version :content-type:in-reply-to; s=mesmtp; bh=0yXEJozJEgePdhfU53Kf9Vq+ 38fzaLJpufyowrmG3SU=; b=pykQVYVuSEZonK3y3jqPoLntKlR0MvZ7AphpBSHA mKQVrN9ij2wSuMvYS+coZZmuH2g4XSOGaUg78Lqo6jzi/s8y7cT49xLT/by0NLH9 DxAGkFszI5BV8NmlS2vcs0Tkgl7d9o265Q5hdXOpy8hviprJvb4pPbGSVStDoz/1 ipA= DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:date:from:in-reply-to :message-id:mime-version:references:subject:to:x-me-proxy :x-me-proxy:x-me-sender:x-me-sender:x-sasl-enc; s=fm2; bh=0yXEJo zJEgePdhfU53Kf9Vq+38fzaLJpufyowrmG3SU=; b=CilMOfn1PWYpDvXPDOWt12 RZFLr+k5RoszH17b2QqlCXlRWg56PgBIg1Afb61Wdhz9BVv8F3MOlX+pf6OnGeb1 L+Sh2+vxxKytzN+odJiz+pBo5krnimMqYjeX6DviBPXgXT/0DVcQtIMenoUcvLGX 6jbuNfk0OThmSs9jN2C8SFw8fqB/RbZG9PDobNRqbYbiDyI1ovUzm3m/t7JJsFqC LX1HP9ZSEDPumaNsynmR60svgEsko9qgLcqyKK0ynMzgubCwSGuA3ZCeWbOWBBHW tg6V7YE4kmDXKMFO3pAjhPS3AJPpSZiL5+8inVpzQ244xPBx3Iyv4Rge8ShTlkQQ == X-ME-Sender: X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgedutddrudekgdegudculddtuddrgedtledrtddtmd cutefuodetggdotefrodftvfcurfhrohhfihhlvgemucfhrghsthforghilhdpqfhuthen uceurghilhhouhhtmecufedttdenucesvcftvggtihhpihgvnhhtshculddquddttddmne cujfgurhepfffhvffukfhfgggtuggjfgesghdtreertderjeenucfhrhhomhepnfgvohcu hfgrmhhulhgrrhhiuceolhgvohesfhgrmhhulhgrrhhirdhnrghmvgeqnecukfhppeejie druddvgedrvddtvddrudefjeenucfrrghrrghmpehmrghilhhfrhhomheplhgvohesfhgr mhhulhgrrhhirdhnrghmvgenucevlhhushhtvghrufhiiigvpedt X-ME-Proxy: Received: from localhost (c-76-124-202-137.hsd1.pa.comcast.net [76.124.202.137]) by mail.messagingengine.com (Postfix) with ESMTPA id 1F2311030F; Mon, 25 Feb 2019 20:55:42 -0500 (EST) Date: Mon, 25 Feb 2019 20:55:41 -0500 From: Leo Famulari Message-ID: <20190226015541.GA25583@jasmine.lan> References: <1551101169-7293-1-git-send-email-pgarlick@tourbillion-technology.com> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="0OAP2g/MAC+5xKAE" Content-Disposition: inline In-Reply-To: <1551101169-7293-1-git-send-email-pgarlick@tourbillion-technology.com> User-Agent: Mutt/1.11.3 (2019-02-01) X-Spam-Score: -0.7 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) --0OAP2g/MAC+5xKAE Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On Mon, Feb 25, 2019 at 01:26:09PM +0000, Paul Garlick wrote: > * gnu/packages/maths.scm (python-petsc4py): Update to 10.3.1. I tested this update by building fenics on top of it. On my x86-63 machine, it failed as below. Is this expected or a reason to block the python-petsc4py update? ------ [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundS= olver.cpp.o cd /tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv-0/build/dolfin && /gnu/= store/n2p1zs14y89lwkg9da68y12pc10c6sw9-gcc-5.5.0/bin/c++ -DDOLFIN_VERSION= =3D\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH= -DHAS_SLEPC -DHAS_SUNDIALS -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPO= RTS -I/tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv-0/fenics-project-dol= fin-948dc42cc4e0 -I/tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv-0/build= -I/gnu/store/9ghap4fk37lqzpcxplrswvg0yfmwm64x-sundials-openmpi-3.1.1/inclu= de -isystem /gnu/store/4vciqisw09sfpb3dc5nshynwgrv7sh1d-python-fenics-ffc-2= 018.1.0/lib/python3.7/site-packages/ffc/backends/ufc -isystem /gnu/store/kd= 4byfi7fyck8i0qy298ghrr0ig8cxay-eigen-3.3.5/include/eigen3 -isystem /gnu/sto= re/gw08kjck9zpib5v2vc3jdrws5a838gpd-hdf5-parallel-openmpi-1.8.21/include -i= system /gnu/store/2y704qn8mjljnmswf87dky0nzzlbld1d-suitesparse-4.5.5/includ= e -isystem /gnu/store/xbbiqkjdl8xs018qk217p7fqqgnzdk67-pt-scotch32-6.0.6/in= clude -isystem /gnu/store/nq4lsyipmfb0q7g26ra45rwwqrh3x8zw-zlib-1.2.11/incl= ude -isystem /gnu/store/lpd53a5zszm9mzzn68i7a1cwcf0nymvy-openmpi-4.0.0/incl= ude -isystem /gnu/store/pz22lgiw476i9fla6ds5f1shchndk7ny-boost-1.69.0/inclu= de -O2 -g -DNDEBUG -fPIC -std=3Dc++11 -o CMakeFiles/dolfin.dir/nls/TAOLi= nearBoundSolver.cpp.o -c /tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv-0= /fenics-project-dolfin-948dc42cc4e0/dolfin/nls/TAOLinearBoundSolver.cpp /tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv-0/fenics-project-dolfin-94= 8dc42cc4e0/dolfin/nls/PETScSNESSolver.cpp:51:64: error: =E2=80=98SNESTEST= =E2=80=99 was not declared in this scope {"test", {"Tool to verify Jacobian approximation", SNESTEST}}, ^ /tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv-0/fenics-project-dolfin-94= 8dc42cc4e0/dolfin/nls/PETScSNESSolver.cpp:68:56: error: could not convert = =E2=80=98{{"default", {"default SNES method", ""}}, {"newtonls", {"Line sea= rch method", "newtonls"}}, {"newtontr", {"Trust region method", "newtontr"}= }, {"test", {"Tool to verify Jacobian approximation", }},= {"ngmres", {"Nonlinear generalised minimum residual method", "ngmres"}}, {= "nrichardson", {"Richardson nonlinear method (Picard iteration)", "nrichard= son"}}, {"vinewtonrsls", {"Reduced space active set solver method (for boun= ds)", "vinewtonrsls"}}, {"vinewtonssls", {"Reduced space active set solver = method (for bounds)", "vinewtonssls"}}, {"qn", {"Limited memory quasi-Newto= n", "qn"}}, {"ncg", {"Nonlinear conjugate gradient method", "ncg"}}, {"fas"= , {"Full Approximation Scheme nonlinear multigrid method", "fas"}}, {"nasm"= , {"Nonlinear Additive Schwartz", "nasm"}}, {"anderson", {"Anderson mixing = method", "anderson"}}, {"aspin", {"Additive-Schwarz Preconditioned Inexact = Newton", "aspin"}}, {"ms", {"Multistage smoothers", "ms"}}}=E2=80=99 from = =E2=80=98=E2=80=99 to =E2=80=98const std::= map, std::pair, const char* const> >=E2=80=99 {"ms", {"Multistage smoothers", SNESMS}} }; ^ [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalPar= ameters.cpp.o cd /tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv-0/build/dolfin && /gnu/= store/n2p1zs14y89lwkg9da68y12pc10c6sw9-gcc-5.5.0/bin/c++ -DDOLFIN_VERSION= =3D\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH= -DHAS_SLEPC -DHAS_SUNDIALS -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPO= RTS -I/tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv-0/fenics-project-dol= fin-948dc42cc4e0 -I/tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv-0/build= -I/gnu/store/9ghap4fk37lqzpcxplrswvg0yfmwm64x-sundials-openmpi-3.1.1/inclu= de -isystem /gnu/store/4vciqisw09sfpb3dc5nshynwgrv7sh1d-python-fenics-ffc-2= 018.1.0/lib/python3.7/site-packages/ffc/backends/ufc -isystem /gnu/store/kd= 4byfi7fyck8i0qy298ghrr0ig8cxay-eigen-3.3.5/include/eigen3 -isystem /gnu/sto= re/gw08kjck9zpib5v2vc3jdrws5a838gpd-hdf5-parallel-openmpi-1.8.21/include -i= system /gnu/store/2y704qn8mjljnmswf87dky0nzzlbld1d-suitesparse-4.5.5/includ= e -isystem /gnu/store/xbbiqkjdl8xs018qk217p7fqqgnzdk67-pt-scotch32-6.0.6/in= clude -isystem /gnu/store/nq4lsyipmfb0q7g26ra45rwwqrh3x8zw-zlib-1.2.11/incl= ude -isystem /gnu/store/lpd53a5zszm9mzzn68i7a1cwcf0nymvy-openmpi-4.0.0/incl= ude -isystem /gnu/store/pz22lgiw476i9fla6ds5f1shchndk7ny-boost-1.69.0/inclu= de -O2 -g -DNDEBUG -fPIC -std=3Dc++11 -o CMakeFiles/dolfin.dir/parameter= /GlobalParameters.cpp.o -c /tmp/guix-build-fenics-dolfin-2018.1.0.post1.drv= -0/fenics-project-dolfin-948dc42cc4e0/dolfin/parameter/GlobalParameters.cpp make[2]: *** [dolfin/CMakeFiles/dolfin.dir/build.make:2770: dolfin/CMakeFil= es/dolfin.dir/nls/PETScSNESSolver.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: Leaving directory '/tmp/guix-build-fenics-dolfin-2018.1.0.post1.dr= v-0/build' make[1]: *** [CMakeFiles/Makefile2:276: dolfin/CMakeFiles/dolfin.dir/all] E= rror 2 make[1]: Leaving directory '/tmp/guix-build-fenics-dolfin-2018.1.0.post1.dr= v-0/build' make: *** [Makefile:144: all] Error 2 Backtrace: 4 (primitive-load "/gnu/store/fvv87kxqx1lnw75y2qyqq5srwm7=E2=80= =A6") In ice-9/eval.scm: 191:35 3 (_ _) In srfi/srfi-1.scm: 863:16 2 (every1 # =E2=80=A6) In /gnu/store/6bwkbm3a80v0xab5qsicij7bjvmn5yna-module-import/guix/build/gnu= -build-system.scm: 799:28 1 (_ _) In /gnu/store/6bwkbm3a80v0xab5qsicij7bjvmn5yna-module-import/guix/build/uti= ls.scm: 616:6 0 (invoke _ . _) /gnu/store/6bwkbm3a80v0xab5qsicij7bjvmn5yna-module-import/guix/build/utils.= scm:616:6: In procedure invoke: Throw to key `srfi-34' with args `(#)'. builder for `/gnu/store/znvp5a2xnqvzgg9sdbz4wc67wgk3ilrv-fenics-dolfin-2018= =2E1.0.post1.drv' failed with exit code 1 build of /gnu/store/znvp5a2xnqvzgg9sdbz4wc67wgk3ilrv-fenics-dolfin-2018.1.0= =2Epost1.drv failed View build log at '/var/log/guix/drvs/zn/vp5a2xnqvzgg9sdbz4wc67wgk3ilrv-fen= ics-dolfin-2018.1.0.post1.drv.bz2'. cannot build derivation `/gnu/store/v152180dwfgwjk6bpxxf0bni8dcd013n-fenics= -2018.1.0.post1.drv': 1 dependencies couldn't be built guix build: error: build of `/gnu/store/v152180dwfgwjk6bpxxf0bni8dcd013n-fe= nics-2018.1.0.post1.drv' failed ------ --0OAP2g/MAC+5xKAE Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAABCAAdFiEEsFFZSPHn08G5gDigJkb6MLrKfwgFAlx0nJ0ACgkQJkb6MLrK fwg7MxAAoe5uBY3tPKCTgG12BDTresEwaXvJf3K5Sc2oA40yfBMRidNTzunwaWDH EhYg3O6C1XJB+x+dzE6goB84IZ26bqbMv+szZI01bynHdurA19v/+pM1P8gx9t7W yNM+FefcqF9MossgOsXiunRPIYwPWkLewaynxgi013lvQ3y2heEjm27CC102EZ6s Ny3X7nLQPnoUcgXXjmIAfL4EfYhikuGqnEFjZsaS1/eDe3q3stPvp6lhdQzUGNM5 6eEJMQOmRtwxhwCbYGujmuPOoYIbR1raZKZXq02jCeQ7rxRfynbGkJSMQDY/Mm2B dh0A8IGX7PwO2AI4qlMiKL+p4e0ROQGRj4FJkTrYyJRT7lhlgYWb50U1GKKhnWpt FvwhQGeHxBGcvn5f0smx0vSFuwl6mqUQ1p20++VqJAEBEvsP9eQ6yoIxm11/rHHz IoEktRurAEa6WY9JuK8grvmSuC4l5eCuW/nqfs00U6nLbDZgMs+RSS6HnRB7YusE 7iSkv7g9hOkt1dNZ+1PI/fW+6K4VsFL4UlNZoDvzDdVizjM7pW3LZMScg2wscCyg gHuLqV41MwN1iyLm2pWthGVe7/s0rp3GQgqwE8IQVvE01sMObHKGVN6xUwmECp2z yidVsW53IbHl6txkVGGXttoxV9cjqxr4Uybx6W7TNVCCtXSZT4c= =HPSe -----END PGP SIGNATURE----- --0OAP2g/MAC+5xKAE-- From unknown Sun Jun 22 07:57:40 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#34647] [PATCH] gnu: python-petsc4py: Update to 10.3.1. Resent-From: Paul Garlick Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 26 Feb 2019 15:07:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 34647 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Leo Famulari Cc: 34647@debbugs.gnu.org Received: via spool by 34647-submit@debbugs.gnu.org id=B34647.155119357223404 (code B ref 34647); Tue, 26 Feb 2019 15:07:02 +0000 Received: (at 34647) by debbugs.gnu.org; 26 Feb 2019 15:06:12 +0000 Received: from localhost ([127.0.0.1]:53179 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gyeJ9-00065O-Ne for submit@debbugs.gnu.org; Tue, 26 Feb 2019 10:06:11 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:61268) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gyeJ8-00065B-Q1 for 34647@debbugs.gnu.org; Tue, 26 Feb 2019 10:06:11 -0500 Received: from [79.123.23.187] (helo=pancake.local) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gyeJ2-00012q-5L; Tue, 26 Feb 2019 15:06:04 +0000 Message-ID: <55c6d8ac9e364b8c97ba6a23af00e6081b3d23dc.camel@tourbillion-technology.com> From: Paul Garlick Date: Tue, 26 Feb 2019 15:06:03 +0000 In-Reply-To: <20190226015541.GA25583@jasmine.lan> References: <1551101169-7293-1-git-send-email-pgarlick@tourbillion-technology.com> <20190226015541.GA25583@jasmine.lan> Content-Type: text/plain; charset="UTF-8" X-Mailer: Evolution 3.28.5-0ubuntu0.18.04.1 Mime-Version: 1.0 Content-Transfer-Encoding: 7bit X-Spam-Score: -0.7 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) Hi Leo, > I tested this update by building fenics on top of it. On my x86-63 > machine, it failed as below. Is this expected or a reason to block > the python-petsc4py update? Thank you for doing the fenics test too. I have fixed the build problem for fenics-dolfin in patch #34668. These patches for python-petsc4py and fenics-dolfin have been made necessary by the recent update of the PETSc dependency. Essentially, a symbol that used to be referenced in these packages is no longer made available by PETSc. Best regards, Paul. From unknown Sun Jun 22 07:57:40 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Paul Garlick Subject: bug#34647: closed (Re: [bug#34647] [PATCH] gnu: python-petsc4py: Update to 10.3.1.) Message-ID: References: <20190226222622.GB1142@jasmine.lan> <1551101169-7293-1-git-send-email-pgarlick@tourbillion-technology.com> X-Gnu-PR-Message: they-closed 34647 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 34647@debbugs.gnu.org Date: Tue, 26 Feb 2019 22:27:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1551220022-30958-1" This is a multi-part message in MIME format... ------------=_1551220022-30958-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #34647: [PATCH] gnu: python-petsc4py: Update to 10.3.1. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 34647@debbugs.gnu.org. --=20 34647: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D34647 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1551220022-30958-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 34647-done) by debbugs.gnu.org; 26 Feb 2019 22:26:47 +0000 Received: from localhost ([127.0.0.1]:53364 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gylBX-00082u-Hf for submit@debbugs.gnu.org; Tue, 26 Feb 2019 17:26:47 -0500 Received: from out2-smtp.messagingengine.com ([66.111.4.26]:42731) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gylBT-00082T-F5 for 34647-done@debbugs.gnu.org; Tue, 26 Feb 2019 17:26:43 -0500 Received: from compute4.internal (compute4.nyi.internal [10.202.2.44]) by mailout.nyi.internal (Postfix) with ESMTP id 56E5421D3C; Tue, 26 Feb 2019 17:26:38 -0500 (EST) Received: from mailfrontend1 ([10.202.2.162]) by compute4.internal (MEProxy); Tue, 26 Feb 2019 17:26:38 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=famulari.name; h=date:from:to:cc:subject:message-id:references:mime-version :content-type:in-reply-to; s=mesmtp; bh=2L12JHLZXKuimexqiLz6sG/y D6ynkjSyh7Ihf24iG2I=; b=H3NrPkrIyz8haffkCLgj1cBhQuR2C+HGdw7l7+j9 WCeDDZjub7A/9CUEtIuHrT3sPFCAFcRUloAeCWs5RJhcTG49H50qddh2snA+YQSP 98b0C4GeGQS69p94t0tAarcmgCpGiVbNMb2emVxtt1IDtdG5zPTZ5bR2teQFmeyP QxQ= DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:date:from:in-reply-to :message-id:mime-version:references:subject:to:x-me-proxy :x-me-proxy:x-me-sender:x-me-sender:x-sasl-enc; s=fm2; bh=2L12JH LZXKuimexqiLz6sG/yD6ynkjSyh7Ihf24iG2I=; b=AGkt/5FA0NKgUEvmDdXSSU /hNw80/RcDsCLQBOZ//QsiGV160srjJLAzjQcXnXZ9oSoYJU5Lf6z0C0H+Jo3uPv SrSSVGsEwBLSIFjPxh5WzuFYqoXUEDU/lwc1K/0oBs6HxCsmsYCaA2coYuw6Q/6m DboVhM+fiWnbcN/9j6zWJq6T7QBaGe81O1lt+pTK8PwWgHYROEtf+TbxozXFZjMJ QKb9exqCTy71esrwgLzZhNjCB+2lIE3Xj4nadthxO0Nz/Wz9YAYCwOoYIh7blTQe ZrQoXCOOpTOWQvK1IzMFzJds4lx6gTz7fSXVHtEq0CZP9nIKWxBgs9Pl1vtmoCqw == X-ME-Sender: X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgedutddrudelgdduieehucetufdoteggodetrfdotf fvucfrrhhofhhilhgvmecuhfgrshhtofgrihhlpdfqfgfvpdfurfetoffkrfgpnffqhgen uceurghilhhouhhtmecufedttdenucesvcftvggtihhpihgvnhhtshculddquddttddmne cujfgurhepfffhvffukfhfgggtuggjfgesghdtreertdervdenucfhrhhomhepnfgvohcu hfgrmhhulhgrrhhiuceolhgvohesfhgrmhhulhgrrhhirdhnrghmvgeqnecukfhppeelie drieegrdeiiedrudelgeenucfrrghrrghmpehmrghilhhfrhhomheplhgvohesfhgrmhhu lhgrrhhirdhnrghmvgenucevlhhushhtvghrufhiiigvpedu X-ME-Proxy: Received: from localhost (96-64-66-194-static.hfc.comcastbusiness.net [96.64.66.194]) by mail.messagingengine.com (Postfix) with ESMTPA id E146AE419A; Tue, 26 Feb 2019 17:26:37 -0500 (EST) Date: Tue, 26 Feb 2019 17:26:22 -0500 From: Leo Famulari To: Paul Garlick Subject: Re: [bug#34647] [PATCH] gnu: python-petsc4py: Update to 10.3.1. Message-ID: <20190226222622.GB1142@jasmine.lan> References: <1551101169-7293-1-git-send-email-pgarlick@tourbillion-technology.com> <20190226015541.GA25583@jasmine.lan> <55c6d8ac9e364b8c97ba6a23af00e6081b3d23dc.camel@tourbillion-technology.com> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="24zk1gE8NUlDmwG9" Content-Disposition: inline In-Reply-To: <55c6d8ac9e364b8c97ba6a23af00e6081b3d23dc.camel@tourbillion-technology.com> User-Agent: Mutt/1.11.3 (2019-02-01) X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 34647-done Cc: 34647-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) --24zk1gE8NUlDmwG9 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On Tue, Feb 26, 2019 at 03:06:03PM +0000, Paul Garlick wrote: > Hi Leo, >=20 > > I tested this update by building fenics on top of it. On my x86-63 ^ Oops, silly typo ----------------------------------------------------| > > machine, it failed as below. Is this expected or a reason to block > > the python-petsc4py update? >=20 > Thank you for doing the fenics test too. =20 >=20 > I have fixed the build problem for fenics-dolfin in patch #34668. Great! > These patches for python-petsc4py and fenics-dolfin have been made=20 > necessary by the recent update of the PETSc dependency. Essentially, > a symbol that used to be referenced in these packages is no longer > made available by PETSc. Okay, I've pushed the python-petsc4py update as 758439cf4b20851d25c1d72d289cc6d4556ccda2 --24zk1gE8NUlDmwG9 Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAABCAAdFiEEsFFZSPHn08G5gDigJkb6MLrKfwgFAlx1vQ0ACgkQJkb6MLrK fwh5xw/+OZ3O9vYyyCVuUI/f9gJ+YopQs2WPYy4rFEzn89Pjw4Tl+zMrIHl49qS3 uODzXP0l9Xq98v0mC9zZPQ2uAdbY0IUEom3UEIZWJN6b+AcCsEiilbsRxs45is/l /yTFlKeLxW9R9N7Z+klvanTLixB7vXRFqk44eXa0TLbzGH7p+z88e5TpQczQq3AH ROo8JL2OLxiY765xBMfronzpwsecW0tdPTEzO60VSRuySdmuwVqaOPq39/GGcUSx uTipuTPZ5aMS+XtPj9u+RFvO/+fXsvX4teiBtlUC6pAA7oC8ZdoFMpOBgDmL9m49 UvhTvTrAjWQSzgJ4YMjHf+JCohQQcCe9obsiQw+T19e5T71XrMfSc7DFw9CeUgKU /2v+WZdr6AicQE5ssrCuEz9uY/GM8eny2jE7mTFoHLo/ALFlRZVlpqK9HWXAkYm4 LVIz40osC99R4wE6HucC+sinuba2yNdup3ix+0ikFP/suaijUSAAt3tUzPxCGjNC SuJ1poWoXMxkRNOYWJNM/in1KHWQEUrjTIdCJ+tpW+gnYuhDtIJMgxVlcd9Nkhl8 pzT2KzJhEVSga4wx0gTGc0XySIpIzwUztz+pVXZJJZ6UpCwSJYtRz+NMIPR1h5Xt HuJszvn4+sbY3YdgdQEdffm/fJFwSMxKobiZgqU8eR5/G04qBvw= =gW0o -----END PGP SIGNATURE----- --24zk1gE8NUlDmwG9-- ------------=_1551220022-30958-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 25 Feb 2019 13:27:38 +0000 Received: from localhost ([127.0.0.1]:50941 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gyGIE-000230-DL for submit@debbugs.gnu.org; Mon, 25 Feb 2019 08:27:38 -0500 Received: from eggs.gnu.org ([209.51.188.92]:54375) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gyGIC-00022m-1W for submit@debbugs.gnu.org; Mon, 25 Feb 2019 08:27:36 -0500 Received: from lists.gnu.org ([209.51.188.17]:45308) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1gyGI2-0003Xd-2J for submit@debbugs.gnu.org; Mon, 25 Feb 2019 08:27:27 -0500 Received: from eggs.gnu.org ([209.51.188.92]:40511) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gyGI1-0000tJ-AJ for guix-patches@gnu.org; Mon, 25 Feb 2019 08:27:25 -0500 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.1 required=5.0 tests=BAYES_50,RCVD_IN_DNSWL_LOW autolearn=disabled version=3.3.2 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gyGHo-0003V3-SL for guix-patches@gnu.org; Mon, 25 Feb 2019 08:27:17 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:19392) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1gyGHm-0003Pb-6k for guix-patches@gnu.org; Mon, 25 Feb 2019 08:27:10 -0500 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gyGHf-00022A-CI; Mon, 25 Feb 2019 13:27:04 +0000 From: Paul Garlick To: guix-patches@gnu.org Subject: [PATCH] gnu: python-petsc4py: Update to 10.3.1. Date: Mon, 25 Feb 2019 13:26:09 +0000 Message-Id: <1551101169-7293-1-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x (no timestamps) [generic] X-Received-From: 85.233.160.19 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: submit Cc: Paul Garlick X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/maths.scm (python-petsc4py): Update to 10.3.1. --- gnu/packages/maths.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 74554e2..a39323e 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1797,14 +1797,14 @@ scientific applications modeled by partial differential equations.") (define-public python-petsc4py (package (name "python-petsc4py") - (version "3.10.0") + (version "3.10.1") (source (origin (method url-fetch) (uri (pypi-uri "petsc4py" version)) (sha256 (base32 - "0ch3g6dsvxl7qi984fcssv7cxfbif4bw04gkvxl2l1b8wrmvrm25")))) + "094hcnran0r2z1wlvmjswsz3ski1m9kqrl5l0ax8jjhnk55x0flh")))) (build-system python-build-system) (arguments `(#:phases -- 1.8.3.1 ------------=_1551220022-30958-1--