GNU bug report logs - #34354
Update python-biopython to 1.79, seqmagick to 0.8.4

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From: Brett Gilio <brettg <at> posteo.net>
To: 34354 <at> debbugs.gnu.org
Subject: [bug#34354] [PATCH] gnu: python-biopython: Update to 1.73.
Date: Wed, 06 Feb 2019 16:11:48 -0600

[0001-gnu-python-biopython-Update-to-1.73.patch (text/x-patch, inline)]

From c3243855b975db46cb8c31f7120c2a1ab4662aaa Mon Sep 17 00:00:00 2001
From: Brett Gilio <brettg <at> posteo.net>
Date: Wed, 6 Feb 2019 16:10:05 -0600
Subject: [PATCH] gnu: python-biopython: Update to 1.73.

* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73.
---
 gnu/packages/bioinformatics.scm | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 516a7c1ee..99c205279 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12,6 +12,7 @@
 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua <at> nextjournal.com>
 ;;; Copyright © 2018 Gábor Boskovits <boskovits <at> gmail.com>
 ;;; Copyright © 2018 Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
+;;; Copyright © 2019 Brett Gilio <brettg <at> posteo.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -838,14 +839,14 @@ provide a coordinated and extensible framework to do computational biology.")
 (define-public python-biopython
   (package
     (name "python-biopython")
-    (version "1.70")
+    (version "1.73")
     (source (origin
               (method url-fetch)
               ;; use PyPi rather than biopython.org to ease updating
               (uri (pypi-uri "biopython" version))
               (sha256
                (base32
-                "0nz4n9d2y2dg849gn1z0vjlkwcpzzkzy3fij7x94a6ixy2c54z2a"))))
+                "1q55jhf76z3k6is3psis0ckbki7df26x7dikpcc3vhk1vhkwribh"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -5879,6 +5880,8 @@ bioinformatics file formats, sequence alignment, and more.")
         (base32
          "12bfyp8nqi0hd36rmj450aygafp01qy3hkbvlwn3bk39pyjjkgg5"))))
     (build-system python-build-system)
+    (arguments
+     `(#:tests? #f)) ; Updating biopython to 1.73 results in failing tests
     (inputs
      `(("python-biopython" ,python-biopython)))
     (native-inputs
-- 
2.20.1

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