From unknown Mon Jun 23 13:11:24 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#33545 <33545@debbugs.gnu.org> To: bug#33545 <33545@debbugs.gnu.org> Subject: Status: [PATCH 0/2] Enable use of hypre via petsc Reply-To: bug#33545 <33545@debbugs.gnu.org> Date: Mon, 23 Jun 2025 20:11:24 +0000 retitle 33545 [PATCH 0/2] Enable use of hypre via petsc reassign 33545 guix-patches submitter 33545 Paul Garlick severity 33545 normal tag 33545 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Nov 28 14:44:01 2018 Received: (at submit) by debbugs.gnu.org; 28 Nov 2018 19:44:01 +0000 Received: from localhost ([127.0.0.1]:53796 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5kf-0007B8-9t for submit@debbugs.gnu.org; Wed, 28 Nov 2018 14:44:01 -0500 Received: from eggs.gnu.org ([208.118.235.92]:48703) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5kd-0007Aw-MY for submit@debbugs.gnu.org; Wed, 28 Nov 2018 14:43:59 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gS5kW-0005i1-El for submit@debbugs.gnu.org; Wed, 28 Nov 2018 14:43:54 -0500 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00 autolearn=disabled version=3.3.2 Received: from lists.gnu.org ([2001:4830:134:3::11]:34646) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1gS5kV-0005gi-2X for submit@debbugs.gnu.org; Wed, 28 Nov 2018 14:43:52 -0500 Received: from eggs.gnu.org ([2001:4830:134:3::10]:58294) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gS5kU-0007IY-8F for guix-patches@gnu.org; Wed, 28 Nov 2018 14:43:50 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gS5kQ-0005aa-2b for guix-patches@gnu.org; Wed, 28 Nov 2018 14:43:50 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:14156) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1gS5kO-0005Rc-1q for guix-patches@gnu.org; Wed, 28 Nov 2018 14:43:44 -0500 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gS5kH-0006WD-6Q; Wed, 28 Nov 2018 19:43:38 +0000 From: Paul Garlick To: guix-patches@gnu.org Subject: [PATCH 0/2] Enable use of hypre via petsc Date: Wed, 28 Nov 2018 19:42:30 +0000 Message-Id: <1543434150-32152-1-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x (no timestamps) [generic] [fuzzy] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Received-From: 2001:4830:134:3::11 X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: submit Cc: Paul Garlick X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) Hi Guix, These two patches enable the HYPRE preconditioners to be used by packages that use PETSc, such as FEniCS. The first patch adds the necessary configure flag for petsc-openmpi. The second patch is needed to ensure that the check phase of the fenics build continues to succeed. Best regards, Paul. Paul Garlick (2): gnu: petsc-openmpi: Configure with support for HYPRE preconditioner. gnu: fenics: Skip extra demo in 'check' phase. gnu/packages/maths.scm | 4 +++- gnu/packages/simulation.scm | 1 + 2 files changed, 4 insertions(+), 1 deletion(-) -- 1.8.3.1 From debbugs-submit-bounces@debbugs.gnu.org Wed Nov 28 14:48:58 2018 Received: (at 33545) by debbugs.gnu.org; 28 Nov 2018 19:48:58 +0000 Received: from localhost ([127.0.0.1]:53801 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5pR-0007JM-SL for submit@debbugs.gnu.org; Wed, 28 Nov 2018 14:48:58 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:19734) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5pQ-0007J4-2h for 33545@debbugs.gnu.org; Wed, 28 Nov 2018 14:48:56 -0500 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gS5pJ-0003Pw-CE; Wed, 28 Nov 2018 19:48:50 +0000 From: Paul Garlick To: 33545@debbugs.gnu.org Subject: [PATCH 1/2] gnu: petsc-openmpi: Configure with support for HYPRE preconditioner. Date: Wed, 28 Nov 2018 19:48:19 +0000 Message-Id: <1543434500-32200-1-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 33545 Cc: Paul Garlick X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) * gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi. [arguments]: Add 'with-hypre=1' flag. --- gnu/packages/maths.scm | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 0cf8916..85af458 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1767,6 +1767,7 @@ scientific applications modeled by partial differential equations.") (name "petsc-openmpi") (inputs `(("hdf5" ,hdf5-parallel-openmpi) + ("hypre" ,hypre-openmpi) ("metis" ,metis) ("mumps" ,mumps-openmpi) ("openmpi" ,openmpi) @@ -1776,7 +1777,8 @@ scientific applications modeled by partial differential equations.") (arguments (substitute-keyword-arguments (package-arguments petsc) ((#:configure-flags cf) - ``("--with-mpiexec=mpirun" + ``("--with-hypre=1" + "--with-mpiexec=mpirun" "--with-metis=1" "--with-mumps=1" "--with-scalapack=1" -- 1.8.3.1 From debbugs-submit-bounces@debbugs.gnu.org Wed Nov 28 14:49:08 2018 Received: (at 33545) by debbugs.gnu.org; 28 Nov 2018 19:49:08 +0000 Received: from localhost ([127.0.0.1]:53805 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5pc-0007KF-6t for submit@debbugs.gnu.org; Wed, 28 Nov 2018 14:49:08 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:19766) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gS5pa-0007JY-3I for 33545@debbugs.gnu.org; Wed, 28 Nov 2018 14:49:06 -0500 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gS5pU-0003Pw-AL; Wed, 28 Nov 2018 19:49:00 +0000 From: Paul Garlick To: 33545@debbugs.gnu.org Subject: [PATCH 2/2] gnu: fenics: Skip extra demo in 'check' phase. Date: Wed, 28 Nov 2018 19:48:20 +0000 Message-Id: <1543434500-32200-2-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 In-Reply-To: <1543434500-32200-1-git-send-email-pgarlick@tourbillion-technology.com> References: <1543434500-32200-1-git-send-email-pgarlick@tourbillion-technology.com> X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 33545 Cc: Paul Garlick X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) * gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl' demo to list of demos that require meshes supplied by git-lfs. --- gnu/packages/simulation.scm | 1 + 1 file changed, 1 insertion(+) diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm index 6144e23..bbe6d53 100644 --- a/gnu/packages/simulation.scm +++ b/gnu/packages/simulation.scm @@ -639,6 +639,7 @@ user interface to the FEniCS core components and external libraries.") "'lift-drag', \n" "'elastodynamics', \n" "'dg-advection-diffusion', \n" + "'curl-curl', \n" "'contact-vi-tao', \n" "'contact-vi-snes', \n" "'collision-detection', \n" -- 1.8.3.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Dec 04 05:14:11 2018 Received: (at 33545-done) by debbugs.gnu.org; 4 Dec 2018 10:14:11 +0000 Received: from localhost ([127.0.0.1]:59896 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gU7iV-0006xl-5O for submit@debbugs.gnu.org; Tue, 04 Dec 2018 05:14:11 -0500 Received: from mail2-relais-roc.national.inria.fr ([192.134.164.83]:21607) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gU7iQ-0006wZ-29 for 33545-done@debbugs.gnu.org; Tue, 04 Dec 2018 05:14:07 -0500 X-IronPort-AV: E=Sophos;i="5.56,313,1539640800"; d="scan'208";a="358663286" Received: from unknown (HELO ribbon) ([193.50.110.223]) by mail2-relais-roc.national.inria.fr with ESMTP/TLS/AES256-GCM-SHA384; 04 Dec 2018 11:13:57 +0100 From: ludovic.courtes@inria.fr (Ludovic =?utf-8?Q?Court=C3=A8s?=) To: Paul Garlick Subject: Re: [bug#33545] [PATCH 0/2] Enable use of hypre via petsc References: <1543434150-32152-1-git-send-email-pgarlick@tourbillion-technology.com> Date: Tue, 04 Dec 2018 11:13:54 +0100 In-Reply-To: <1543434150-32152-1-git-send-email-pgarlick@tourbillion-technology.com> (Paul Garlick's message of "Wed, 28 Nov 2018 19:42:30 +0000") Message-ID: <87va4961lp.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: 33545-done Cc: 33545-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) Hello, Paul Garlick skribis: > Paul Garlick (2): > gnu: petsc-openmpi: Configure with support for HYPRE preconditioner. > gnu: fenics: Skip extra demo in 'check' phase. Applied both patches, thank you! Ludo=E2=80=99. From unknown Mon Jun 23 13:11:24 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Tue, 01 Jan 2019 12:24:05 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator