From unknown Sat Aug 09 22:38:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#32694] [PATCH] gnu: arpack-ng-openmpi: Fix build. Resent-From: Paul Garlick Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 11 Sep 2018 08:40:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 32694 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 32694@debbugs.gnu.org Cc: Paul Garlick X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.153665520025726 (code B ref -1); Tue, 11 Sep 2018 08:40:02 +0000 Received: (at submit) by debbugs.gnu.org; 11 Sep 2018 08:40:00 +0000 Received: from localhost ([127.0.0.1]:36130 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzeDI-0006gr-B6 for submit@debbugs.gnu.org; Tue, 11 Sep 2018 04:40:00 -0400 Received: from eggs.gnu.org ([208.118.235.92]:49820) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzeDG-0006ge-OF for submit@debbugs.gnu.org; Tue, 11 Sep 2018 04:39:58 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzeDA-0007J6-Pr for submit@debbugs.gnu.org; Tue, 11 Sep 2018 04:39:53 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00 autolearn=disabled version=3.3.2 Received: from lists.gnu.org ([2001:4830:134:3::11]:53852) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fzeDA-0007It-MW for submit@debbugs.gnu.org; Tue, 11 Sep 2018 04:39:52 -0400 Received: from eggs.gnu.org ([2001:4830:134:3::10]:42570) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fzeD9-0004aR-UG for guix-patches@gnu.org; Tue, 11 Sep 2018 04:39:52 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzeD6-0007H2-Qa for guix-patches@gnu.org; Tue, 11 Sep 2018 04:39:51 -0400 Received: from smtp.hosts.co.uk ([85.233.160.19]:42386) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fzeD6-0007Dv-Iu for guix-patches@gnu.org; Tue, 11 Sep 2018 04:39:48 -0400 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1fzeD4-0005bL-8c; Tue, 11 Sep 2018 09:39:46 +0100 From: Paul Garlick Date: Tue, 11 Sep 2018 09:38:39 +0100 Message-Id: <1536655119-18682-1-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x (no timestamps) [generic] [fuzzy] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Received-From: 2001:4830:134:3::11 X-Spam-Score: -5.0 (-----) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) * gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add 'set-test-environment phase. --- gnu/packages/maths.scm | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 01bd03c..bf68089 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -508,7 +508,17 @@ large scale eigenvalue problems.") (arguments (substitute-keyword-arguments (package-arguments arpack-ng) ((#:configure-flags _ '()) - ''("--enable-mpi")))) + ''("--enable-mpi")) + ((#:phases phases '%standard-phases) + `(modify-phases ,phases + (add-before 'check 'set-test-environment + (lambda _ + ;; By default, running the test suite would fail because 'ssh' + ;; could not be found in $PATH. Define this variable to + ;; placate Open MPI without adding a dependency on OpenSSH (the + ;; agent isn't used anyway.) + (setenv "OMPI_MCA_plm_rsh_agent" (which "cat")) + #t)))))) (synopsis "Fortran subroutines for solving eigenvalue problems with MPI"))) (define-public lapack -- 1.8.3.1 From unknown Sat Aug 09 22:38:54 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Paul Garlick Subject: bug#32694: closed (Re: [bug#32694] [PATCH] gnu: arpack-ng-openmpi: Fix build.) Message-ID: References: <87y3c883vw.fsf@gnu.org> <1536655119-18682-1-git-send-email-pgarlick@tourbillion-technology.com> X-Gnu-PR-Message: they-closed 32694 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 32694@debbugs.gnu.org Date: Tue, 11 Sep 2018 15:13:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1536678782-16879-1" This is a multi-part message in MIME format... ------------=_1536678782-16879-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #32694: [PATCH] gnu: arpack-ng-openmpi: Fix build. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 32694@debbugs.gnu.org. --=20 32694: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D32694 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1536678782-16879-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 32694-done) by debbugs.gnu.org; 11 Sep 2018 15:12:36 +0000 Received: from localhost ([127.0.0.1]:37213 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzkLB-0004NK-Uv for submit@debbugs.gnu.org; Tue, 11 Sep 2018 11:12:36 -0400 Received: from eggs.gnu.org ([208.118.235.92]:53670) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzkL7-0004MV-PT for 32694-done@debbugs.gnu.org; Tue, 11 Sep 2018 11:12:32 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzkKy-0002F8-PO for 32694-done@debbugs.gnu.org; Tue, 11 Sep 2018 11:12:24 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00 autolearn=disabled version=3.3.2 Received: from fencepost.gnu.org ([2001:4830:134:3::e]:41791) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fzkKy-0002Ex-IS; Tue, 11 Sep 2018 11:12:20 -0400 Received: from [193.50.110.124] (port=56940 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1fzkKy-0002u7-8P; Tue, 11 Sep 2018 11:12:20 -0400 From: ludo@gnu.org (Ludovic =?utf-8?Q?Court=C3=A8s?=) To: Paul Garlick Subject: Re: [bug#32694] [PATCH] gnu: arpack-ng-openmpi: Fix build. References: <1536655119-18682-1-git-send-email-pgarlick@tourbillion-technology.com> Date: Tue, 11 Sep 2018 17:12:19 +0200 In-Reply-To: <1536655119-18682-1-git-send-email-pgarlick@tourbillion-technology.com> (Paul Garlick's message of "Tue, 11 Sep 2018 09:38:39 +0100") Message-ID: <87y3c883vw.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 2001:4830:134:3::e X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: 32694-done Cc: 32694-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) Hi, Paul Garlick skribis: > * gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add > 'set-test-environment phase. Applied, thanks! Ludo'. ------------=_1536678782-16879-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 11 Sep 2018 08:40:00 +0000 Received: from localhost ([127.0.0.1]:36130 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzeDI-0006gr-B6 for submit@debbugs.gnu.org; Tue, 11 Sep 2018 04:40:00 -0400 Received: from eggs.gnu.org ([208.118.235.92]:49820) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzeDG-0006ge-OF for submit@debbugs.gnu.org; Tue, 11 Sep 2018 04:39:58 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzeDA-0007J6-Pr for submit@debbugs.gnu.org; Tue, 11 Sep 2018 04:39:53 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00 autolearn=disabled version=3.3.2 Received: from lists.gnu.org ([2001:4830:134:3::11]:53852) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fzeDA-0007It-MW for submit@debbugs.gnu.org; Tue, 11 Sep 2018 04:39:52 -0400 Received: from eggs.gnu.org ([2001:4830:134:3::10]:42570) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fzeD9-0004aR-UG for guix-patches@gnu.org; Tue, 11 Sep 2018 04:39:52 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzeD6-0007H2-Qa for guix-patches@gnu.org; Tue, 11 Sep 2018 04:39:51 -0400 Received: from smtp.hosts.co.uk ([85.233.160.19]:42386) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fzeD6-0007Dv-Iu for guix-patches@gnu.org; Tue, 11 Sep 2018 04:39:48 -0400 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1fzeD4-0005bL-8c; Tue, 11 Sep 2018 09:39:46 +0100 From: Paul Garlick To: guix-patches@gnu.org Subject: [PATCH] gnu: arpack-ng-openmpi: Fix build. Date: Tue, 11 Sep 2018 09:38:39 +0100 Message-Id: <1536655119-18682-1-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x (no timestamps) [generic] [fuzzy] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Received-From: 2001:4830:134:3::11 X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: submit Cc: Paul Garlick X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) * gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add 'set-test-environment phase. --- gnu/packages/maths.scm | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 01bd03c..bf68089 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -508,7 +508,17 @@ large scale eigenvalue problems.") (arguments (substitute-keyword-arguments (package-arguments arpack-ng) ((#:configure-flags _ '()) - ''("--enable-mpi")))) + ''("--enable-mpi")) + ((#:phases phases '%standard-phases) + `(modify-phases ,phases + (add-before 'check 'set-test-environment + (lambda _ + ;; By default, running the test suite would fail because 'ssh' + ;; could not be found in $PATH. Define this variable to + ;; placate Open MPI without adding a dependency on OpenSSH (the + ;; agent isn't used anyway.) + (setenv "OMPI_MCA_plm_rsh_agent" (which "cat")) + #t)))))) (synopsis "Fortran subroutines for solving eigenvalue problems with MPI"))) (define-public lapack -- 1.8.3.1 ------------=_1536678782-16879-1--