From unknown Sun Jun 22 07:53:44 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#32688 <32688@debbugs.gnu.org> To: bug#32688 <32688@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-absim. Reply-To: bug#32688 <32688@debbugs.gnu.org> Date: Sun, 22 Jun 2025 14:53:44 +0000 retitle 32688 [PATCH] gnu: Add r-absim. reassign 32688 guix-patches submitter 32688 pimi severity 32688 normal tag 32688 patch owner 32688 Ricardo Wurmus thanks From debbugs-submit-bounces@debbugs.gnu.org Mon Sep 10 14:47:43 2018 Received: (at submit) by debbugs.gnu.org; 10 Sep 2018 18:47:43 +0000 Received: from localhost ([127.0.0.1]:35756 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzRDr-0005eT-5L for submit@debbugs.gnu.org; Mon, 10 Sep 2018 14:47:43 -0400 Received: from eggs.gnu.org ([208.118.235.92]:52511) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzRDo-0005eG-Hu for submit@debbugs.gnu.org; Mon, 10 Sep 2018 14:47:41 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzRDh-0003on-Ug for submit@debbugs.gnu.org; Mon, 10 Sep 2018 14:47:35 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.8 required=5.0 tests=BAYES_50,T_DKIM_INVALID autolearn=disabled version=3.3.2 Received: from lists.gnu.org ([2001:4830:134:3::11]:38960) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fzRDg-0003mg-FR for submit@debbugs.gnu.org; Mon, 10 Sep 2018 14:47:33 -0400 Received: from eggs.gnu.org ([2001:4830:134:3::10]:45128) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fzRDb-0006O4-7U for guix-patches@gnu.org; Mon, 10 Sep 2018 14:47:32 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fzQyD-0001iX-Bp for guix-patches@gnu.org; Mon, 10 Sep 2018 14:31:36 -0400 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:55998) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fzQyC-0001gV-TE for guix-patches@gnu.org; Mon, 10 Sep 2018 14:31:33 -0400 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 4CECEAB36F3 for ; Mon, 10 Sep 2018 20:31:30 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:mime-version:x-mailer:message-id:date :date:subject:subject:from:from:received:received:received; s= mdc; t=1536604283; x=1538418684; bh=IaRuOV7UUDKVcWbvq99VUM7UrrUY POXoQAVcPklve5s=; b=U1QJfrCFuvZo8xiy5ai5aC2ad/elG59ylbKB8jH7jiz5 H3YG0fqzYcWhk/jQdlh8GGQeR/V8WMr9YKOGDmPDJ1SSIz63MSsNisHO3aLVtVft JJaNp8u+yOO1QeyhrAfxJfdl+o5iOgdxdJaYJYtJHWi3/r38A6X5baiE7zUHt90= X-Virus-Scanned: amavisd-new at mdc-berlin.de Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id FcdQt7AtJkBx for ; Mon, 10 Sep 2018 20:31:23 +0200 (CEST) Received: from SW-IT-P-CAS2.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-SHA384 (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Mon, 10 Sep 2018 20:31:23 +0200 (CEST) Received: from biadmin-KVM.nat (141.80.113.106) by SW-IT-P-CAS2.mdc-berlin.net (141.80.113.54) with Microsoft SMTP Server (TLS) id 14.3.408.0; Mon, 10 Sep 2018 20:31:22 +0200 From: pimi To: Subject: [PATCH] gnu: Add r-absim. Date: Mon, 10 Sep 2018 20:30:57 +0200 Message-ID: <20180910183057.7292-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.17.1 MIME-Version: 1.0 Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-TM-AS-Product-Ver: SMEX-12.5.0.1300-8.5.1010-24086.002 X-TM-AS-Result: No-0.472600-8.000000-10 X-TMASE-MatchedRID: sCy2GwBQH7x7qToVEfwBPAPZZctd3P4BE2dwh2sCVX23jFNo+npqn7Uw y2S0d5gR0EdJ1p8GY2DsZX3M9mdWSu9SfL7Qh+9ZnVTWWiNp+v/Sv+oK79xjndzOQo7mTgA+488 8PsZfU2YTQMqemMZ6x9BUYo5FYCgwhP5qlM83OGym/Bn0aZ3AM//ArgPm/2GEsauTQ2/LOh+jxY yRBa/qJShNCXvA0fw+jaPj0W1qn0TKayT/BQTiGrcTY8BZNoD9yWGVmrbOU+f3rrkCUnS8s6xLo J9e2Mf8oH9X60obClIX7LHQMubaNuUnbnhI/5scOnTRO7sckTsKkKTmJSrCGjtF7iEBca7BXyZ6 pl/oDQ1+Az0rNWZh1oK3xHwHujePnOrUWil1YnlDDKa3G4nrLQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.472600-8.000000 X-TMASE-Version: SMEX-12.5.0.1300-8.5.1010-24086.002 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Received-From: 2001:4830:134:3::11 X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: submit Cc: pimi X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) gnu/packages/cran.scm (r-absim): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 814439172..fd4929c0f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5564,3 +5564,31 @@ gf_density(), and so on, bring the formula interface to ggplot(). This captures and extends the excellent simplicity of the lattice-graphics formula interface, while providing the intuitive capabilities of @code{r-ggplot2}.") (license license:expat))) + +(define-public r-absim + (package + (name "r-absim") + (version "0.2.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "AbSim" version)) + (sha256 + (base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m")))) + (properties `((upstream-name . "AbSim"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-powerlaw" ,r-powerlaw))) + (home-page "https://cran.r-project.org/web/packages/AbSim/") + (synopsis "Time resolved simulations of antibody repertoires") + (description + "This package provides simulation methods for the evolution of antibody repertoires. + The heavy and light chain variable region of both human and C57BL/6 mice can +be simulated in a time-dependent fashion. Both single lineages using one set of +V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins +with an initial V-D-J recombination event, starting the first phylogenetic tree. + Upon completion, the main loop of the algorithm begins, with each iteration +representing one simulated time step. Various mutation events are possible at +each time step, contributing to a diverse final repertoire.") + (license license:gpl2))) -- 2.17.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Sep 13 13:01:18 2018 Received: (at control) by debbugs.gnu.org; 13 Sep 2018 17:01:18 +0000 Received: from localhost ([127.0.0.1]:39478 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1g0UzU-0002rZ-0P for submit@debbugs.gnu.org; Thu, 13 Sep 2018 13:01:18 -0400 Received: from sender-of-o51.zoho.com ([135.84.80.216]:21062) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1g0UzS-0002rQ-Ch for control@debbugs.gnu.org; Thu, 13 Sep 2018 13:01:15 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1536858073; cv=none; d=zoho.com; s=zohoarc; b=JAXbrT/8yMJBSSWpA8W4WvW4N2Xs9GZAsmgVn0Gt2ygRVWrdTE4Ew4nFbx4hElzDSEH+iIC73XKKgRcfWvK6+JRGapWJbFqUMs2XN0VF6eK2Qf+hbUMkTdX+sE+5cgLWEhRtYWsiuZPoHhdoZZTQOJr0J0LQxqyudkoSoxBOUUw= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zoho.com; s=zohoarc; t=1536858073; h=Date:From:Message-ID:Subject:To:ARC-Authentication-Results; bh=YmVidLaAVaFZX+CY32qqjOcxankIjIx96VmJXq95uoE=; b=OJvLov/qgbydR9LZSBtFgNBJU4wwLXFo17VTV7s5EbRMlPVN/58Uvauxq7a8GUsWPgc3AP5HHear8pWQ8fMjbbHLfAbwFxsITmSG+SRfFhN4GfJVe8EP/AiRaF8W6PNHB/34s14GEJ0h5M41Y+QkLTvxQg9wZX1HTGfSwDilFwI= ARC-Authentication-Results: i=1; mx.zoho.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1536858073; s=zoho; d=elephly.net; i=rekado@elephly.net; h=Date:To:From:Message-ID:Subject; l=15; bh=YmVidLaAVaFZX+CY32qqjOcxankIjIx96VmJXq95uoE=; b=ZxvAaAJ5VVFjW3zT3n8FfWuuE7FQq54mmIN6RUzFbmbvob2zVcti8TGDtuwfQ5n8 HdvnjnpuW4bBBgn8W/g1DyWyYxxz+HS1XZXTRkfM9XW/CfUYFGu0C3xeW2B7t7wwuE7 h5efP2Or+7L6q/iAnpZWAcwGB4JqSZrC2/BDkWCI= Received: from localhost (port-92-200-33-76.dynamic.qsc.de [92.200.33.76]) by mx.zohomail.com with SMTPS id 1536858071500142.9524709372247; Thu, 13 Sep 2018 10:01:11 -0700 (PDT) Date: Thu, 13 Sep 2018 19:01:08 +0200 To: control@debbugs.gnu.org From: Ricardo Wurmus Message-ID: <165d3e121cd.1eeeeb191216369206.-6955409788226484928@zoho.com> Subject: control message for bug #32688 X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) owner 32688 ! From debbugs-submit-bounces@debbugs.gnu.org Tue Oct 02 16:18:13 2018 Received: (at 32688-done) by debbugs.gnu.org; 2 Oct 2018 20:18:13 +0000 Received: from localhost ([127.0.0.1]:34685 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1g7R7V-0002U7-5c for submit@debbugs.gnu.org; Tue, 02 Oct 2018 16:18:13 -0400 Received: from wnew1-smtp.messagingengine.com ([64.147.123.26]:42911) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1g7R7T-0002Tz-8w for 32688-done@debbugs.gnu.org; Tue, 02 Oct 2018 16:18:11 -0400 Received: from compute4.internal (compute4.nyi.internal [10.202.2.44]) by mailnew.west.internal (Postfix) with ESMTP id 47B682F2; Tue, 2 Oct 2018 16:18:10 -0400 (EDT) Received: from mailfrontend1 ([10.202.2.162]) by compute4.internal (MEProxy); Tue, 02 Oct 2018 16:18:10 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=famulari.name; h=cc:content-type:date:from:in-reply-to:message-id:mime-version :references:subject:to:x-me-sender:x-me-sender:x-sasl-enc; s= mesmtp; bh=DwZarPP8OMbTWKP20bKFtzCPUWvMtk8cm4CqE3H7P2Y=; b=U3Qb/ h1xHXbXXnGMjrad78Aad9XqgLHVmoWrL4DZWhfHe5s+rr2AoZBmrv8p/BPA5p8PR penvS3nsrRXWlbDSc6Yrhgd1mZsufbW/SHDLuw6Cgh0dli/1IQ+18RydRTa4B73E jybHUr9f2USy0BgNtzK8vPFJL5fUnCcg+BAXqU= DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:date:from:in-reply-to :message-id:mime-version:references:subject:to:x-me-sender :x-me-sender:x-sasl-enc; s=fm3; bh=DwZarPP8OMbTWKP20bKFtzCPUWvMt k8cm4CqE3H7P2Y=; b=MTXqgOTq4wBFNbM1XlX3QS0exeVEIfNFDlE4/NZbH1nCl iCygLpjLYukOSmTEH7DXcQI/Cd6X6swJAKecoYkbpE/+IpaBdBhSl6DobaBDDWeM SJ30pE5JG3b8eHwRUiaYStm99FtEGvFy5TANfscD5vwQchRc72GoDm0D6b0T1v94 zwHi8Jbk1luagdPoQ6rLO71vhbPLOClSXjBNr9oPsKIENyJ93CxaS+W/EXngxPow X8jq62PFCLmIapkbyXO9iCnrea4DEfDOd743R9UPNyyljqExT1oHg84QV9vLQuFP sSfQYJV7t7miRs+pBai7tsaoiTA93lxyIn7wPlJIQ== X-ME-Sender: X-ME-Proxy: Received: from localhost (unknown [172.58.201.36]) by mail.messagingengine.com (Postfix) with ESMTPA id 87103E4074; Tue, 2 Oct 2018 16:18:01 -0400 (EDT) Date: Tue, 2 Oct 2018 16:18:00 -0400 From: Leo Famulari To: pimi Subject: Re: [bug#32688] [PATCH] gnu: Add r-absim. Message-ID: <20181002201800.GA20264@jasmine.lan> References: <20180910183057.7292-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="vtzGhvizbBRQ85DL" Content-Disposition: inline In-Reply-To: <20180910183057.7292-1-madalinionel.patrascu@mdc-berlin.de> User-Agent: Mutt/1.10.1 (2018-07-13) X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 32688-done Cc: 32688-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) --vtzGhvizbBRQ85DL Content-Type: text/plain; charset=us-ascii Content-Disposition: inline On Mon, Sep 10, 2018 at 08:30:57PM +0200, pimi wrote: > gnu/packages/cran.scm (r-absim): New variable. Thanks! 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