GNU bug report logs - #32623
[PATCH] gnu: Add r-abhgenotyper.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#32623: closed ([PATCH] gnu: Add r-abhgenotyper.)
Date: Thu, 13 Sep 2018 17:16:02 +0000

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Your message dated Thu, 13 Sep 2018 19:14:42 +0200
with message-id <87o9d1iakd.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add r-abhgenotyper.
has caused the debbugs.gnu.org bug report #32623,
regarding [PATCH] gnu: Add r-abhgenotyper.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
32623: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=32623
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From: pimi <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: pimi <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-abhgenotyper.
Date: Mon, 3 Sep 2018 15:45:20 +0200

gnu/packages/cran.scm (r-abhgenotyper): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 33dc61593..e72eec369 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5035,3 +5035,30 @@ practically sound, highly interpretable model.")
 Axon Instruments/Molecular Devices software such as pClamp 10.  Only files
 recorded in gap-free mode are currently supported.")
     (license license:artistic2.0)))
+
+(define-public r-abhgenotyper
+  (package
+    (name "r-abhgenotyper")
+    (version "1.0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ABHgenotypeR" version))
+       (sha256
+        (base32 "08cpmnaaxsm5c5bjifnfxdlvg5inrf13biqpcl2yq5zpqjmiki0l"))))
+    (properties `((upstream-name . "ABHgenotypeR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ggplot2" ,r-ggplot2)
+       ("r-reshape2" ,r-reshape2)))
+    (home-page "https://github.com/StefanReuscher/ABHgenotypeR/")
+    (synopsis "The @code{r-abhgenotyper} helps visualize and manipulate ABH genotypes")
+    (description
+     "The @code{r-abhgenotyper} package provides simple imputation, error-correction and
+plotting capacities for genotype data.  The @code{r-abhgenotyper} package is
+supposed to serve as an intermediate but independent analysis tool between the
+@code{TASSEL GBS} pipeline and the @code{r-qtl} package.  The @code{r-abhgenotyper}
+provides functionalities not found in either @code{TASSEL} or @code{r-qtl} in
+addition to visualization of genotypes as \"graphical genotypes\".  Plotting is
+based on @code{r-ggplot2}.")
+    (license license:gpl3)))
-- 
2.17.1

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 32623-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-abhgenotyper.
Date: Thu, 13 Sep 2018 19:14:42 +0200

I fixed the description and the commit message and pushed it to the
“master” branch with commit 1efcd0f1ea980472659805d91a2bb486b4136f81.

Thanks!

-- 
Ricardo

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