GNU bug report logs - #32587
[PATCH] gnu: Add r-pore.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: pimi <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#32587: closed (Re: [bug#32587] [PATCH] gnu: Add r-pore.)
Date: Fri, 21 Sep 2018 12:30:03 +0000

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Your bug report

#32587: [PATCH] gnu: Add r-pore.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 32587 <at> debbugs.gnu.org.

-- 
32587: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=32587
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: ludo <at> gnu.org (Ludovic Courtès)
To: pimi <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 32587-done <at> debbugs.gnu.org
Subject: Re: [bug#32587] [PATCH] gnu: Add r-pore.
Date: Fri, 21 Sep 2018 14:29:08 +0200

Hello,

pimi <madalinionel.patrascu <at> mdc-berlin.de> skribis:

> gnu/packages/bioinformatics.scm (r-pore): New variable.

[...]

> +        (string-append
> +         "mirror://sourceforge/projects/rpore/files/"version"/poRe_"version".tar.gz"))

I fixed the URL, clarified the comment about the license, and committed.

Thanks!

Ludo’.

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From: pimi <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: pimi <madalinionel.patrascu <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-pore.
Date: Thu, 30 Aug 2018 12:37:03 +0200

gnu/packages/bioinformatics.scm (r-pore): New variable
---
 gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 22a00894c..0605e4564 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13558,3 +13558,30 @@ reference transcripts provided in a annotation file (also in GTF/GFF3 format).
        (list
         license:expat                   ;license for gffcompare
         license:artistic2.0)))))        ;license for gclib
+
+(define-public r-pore
+  (package
+    (name "r-pore")
+    (version "0.24")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://sourceforge.net/projects/rpore/files/"version"/poRe_"version".tar.gz"))
+       (sha256
+        (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv"))))
+    (properties `((upstream-name . "poRe")))
+    (build-system r-build-system)
+    (native-inputs
+     `(("r-rhdf5" ,r-rhdf5)
+       ("r-shiny" ,r-shiny)
+       ("r-svdialogs" ,r-svdialogs)
+       ("r-data-table" ,r-data-table)
+       ("r-bit64" ,r-bit64)))
+    (home-page "https://sourceforge.net/projects/rpore/files/")
+    (synopsis "This R package enable visualisation of nanopore sequencing data")
+    (description
+     "The Oxford Nanopore MinION is a revolutionary sequencer with a unique model of data
+delivery, requiring novel tools for the novice user.  This package enables
+organisation and visualisation of MinION data.")
+    (license license:gpl3)))
-- 
2.17.1

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