From debbugs-submit-bounces@debbugs.gnu.org Thu Aug 30 06:48:11 2018 Received: (at submit) by debbugs.gnu.org; 30 Aug 2018 10:48:11 +0000 Received: from localhost ([127.0.0.1]:37965 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fvKUl-0006Kh-0U for submit@debbugs.gnu.org; Thu, 30 Aug 2018 06:48:11 -0400 Received: from eggs.gnu.org ([208.118.235.92]:55542) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fvKUj-0006KV-D1 for submit@debbugs.gnu.org; Thu, 30 Aug 2018 06:48:09 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fvKUd-00082l-2N for submit@debbugs.gnu.org; Thu, 30 Aug 2018 06:48:04 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.0 required=5.0 tests=BAYES_40,T_DKIM_INVALID autolearn=disabled version=3.3.2 Received: from lists.gnu.org ([2001:4830:134:3::11]:43651) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fvKUc-00082c-Uz for submit@debbugs.gnu.org; Thu, 30 Aug 2018 06:48:02 -0400 Received: from eggs.gnu.org ([2001:4830:134:3::10]:48036) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fvKUa-0006HJ-6W for guix-patches@gnu.org; Thu, 30 Aug 2018 06:48:02 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fvKKH-0001bs-B7 for guix-patches@gnu.org; Thu, 30 Aug 2018 06:37:26 -0400 Received: from venus.bbbm.mdc-berlin.de ([141.80.25.30]:59836) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fvKKH-0001bP-1S for guix-patches@gnu.org; Thu, 30 Aug 2018 06:37:21 -0400 Received: from localhost (localhost [127.0.0.1]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP id A3F98380678 for ; Thu, 30 Aug 2018 12:37:19 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:mime-version:x-mailer:message-id:date :date:subject:subject:from:from:received:received:received; s= mdc; t=1535625439; x=1537439840; bh=b/ZtICbnXKvCI0UB+HZEB9tgnJzu f308/tczZcq41FQ=; b=QCnhDMxccxBQ/yA8apBX271wPfY9IkHVx9XoVV1TykQD J2Bx+9qX84SGlVSfeMyjgdl8fj7YbxesvY6XAON4BGh/RHo98Kg/siYYiPzwZUiW fe9RtLNkNk3GDIUCfJCsR8Un6OPPdJc3SwGdTz7yHXvTu6Yq0bQXDpuQki1rhgQ= X-Virus-Scanned: amavisd-new at mdc-berlin.de Received: from venus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (venus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id LEngxVhNsQqF for ; Thu, 30 Aug 2018 12:37:19 +0200 (CEST) Received: from SW-IT-P-CAS1.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-SHA384 (256/256 bits)) (No client certificate requested) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Thu, 30 Aug 2018 12:37:19 +0200 (CEST) Received: from biadmin-KVM.nat (141.80.113.106) by SW-IT-P-CAS1.mdc-berlin.net (141.80.113.53) with Microsoft SMTP Server (TLS) id 14.3.408.0; Thu, 30 Aug 2018 12:37:18 +0200 From: pimi To: Subject: [PATCH] gnu: Add r-pore. Date: Thu, 30 Aug 2018 12:37:03 +0200 Message-ID: <20180830103703.10473-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.17.1 MIME-Version: 1.0 Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-TM-AS-Product-Ver: SMEX-12.5.0.1300-8.5.1010-24062.006 X-TM-AS-Result: No-0.081800-8.000000-10 X-TMASE-MatchedRID: GOhvqnuss097qToVEfwBPAPZZctd3P4BglaqJmjfi+CNBfx9QShy4Acs lYpo5iST0EdJ1p8GY2DsZX3M9mdWSpsYswdXk5rLnVTWWiNp+v9flOpBqBHTtzUsHjosUACS7fK xaM2xqkAJc0uCCbfhzAFSTWOh/ZDCLwqc1RzlixeeAiCmPx4NwBnUJ0Ek6yhjxEHRux+uk8jQ9T RN0mhS1xcpvSg91hxF+uNt3MJ2YAoUFBBNJ06f0l5uJs6sjT60biSFUIFrZjdsPCtsx/V98o0FI 2IOYh8Ldl+gB24QmkcunEl+xPsoaIISrdkIFqeuO4Y2dUBhL/BTBYT7RGXoWxJAEJH0NuHTrLqF EXfJX3A= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.081800-8.000000 X-TMASE-Version: SMEX-12.5.0.1300-8.5.1010-24062.006 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Received-From: 2001:4830:134:3::11 X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: submit Cc: pimi X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) gnu/packages/bioinformatics.scm (r-pore): New variable --- gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 22a00894c..0605e4564 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13558,3 +13558,30 @@ reference transcripts provided in a annotation file (also in GTF/GFF3 format). (list license:expat ;license for gffcompare license:artistic2.0))))) ;license for gclib + +(define-public r-pore + (package + (name "r-pore") + (version "0.24") + (source + (origin + (method url-fetch) + (uri (string-append + "https://sourceforge.net/projects/rpore/files/"version"/poRe_"version".tar.gz")) + (sha256 + (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv")))) + (properties `((upstream-name . "poRe"))) + (build-system r-build-system) + (native-inputs + `(("r-rhdf5" ,r-rhdf5) + ("r-shiny" ,r-shiny) + ("r-svdialogs" ,r-svdialogs) + ("r-data-table" ,r-data-table) + ("r-bit64" ,r-bit64))) + (home-page "https://sourceforge.net/projects/rpore/files/") + (synopsis "This R package enable visualisation of nanopore sequencing data") + (description + "The Oxford Nanopore MinION is a revolutionary sequencer with a unique model of data +delivery, requiring novel tools for the novice user. This package enables +organisation and visualisation of MinION data.") + (license license:gpl3))) -- 2.17.1 From debbugs-submit-bounces@debbugs.gnu.org Mon Sep 03 11:22:38 2018 Received: (at 32587) by debbugs.gnu.org; 3 Sep 2018 15:22:38 +0000 Received: from localhost ([127.0.0.1]:44506 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fwqgY-0005Uy-9d for submit@debbugs.gnu.org; Mon, 03 Sep 2018 11:22:38 -0400 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:56474) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fwqgW-0005Uo-0B for 32587@debbugs.gnu.org; Mon, 03 Sep 2018 11:22:37 -0400 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 0008EA81E20 for <32587@debbugs.gnu.org>; Mon, 3 Sep 2018 17:22:34 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:mime-version :message-id:date:date:subject:subject:from:from:user-agent :received:received:received; s=mdc; t=1535988149; x=1537802550; bh=jtj9H2P5hKgaDyypEa3c/a+2rhOM5dIp/b5ZNa/natY=; b=o7UMg1j/9fyD urIJzDC33DVhGLkosh3TW0Zyqvf0AxAHGeRwO5otx5GL/v+hBGxM0fgvkpA0Ky45 ECAJPMuD9jJHNngSPkB/OLu5K4FcK84apFLZKau3kuYm9eMzVsJBndxD1Q/5YJzS eRMgzSP33AiJ79ll7SDHcxLabtXRg8I= X-Virus-Scanned: amavisd-new at mdc-berlin.de Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id uprab0EOTv-K for <32587@debbugs.gnu.org>; Mon, 3 Sep 2018 17:22:29 +0200 (CEST) Received: from SW-IT-P-CAS1.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-SHA384 (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for <32587@debbugs.gnu.org>; Mon, 3 Sep 2018 17:22:29 +0200 (CEST) Received: from localhost (141.80.113.103) by SW-IT-P-CAS1.mdc-berlin.net (141.80.113.53) with Microsoft SMTP Server (TLS) id 14.3.408.0; Mon, 3 Sep 2018 17:22:28 +0200 User-agent: mu4e 1.0; emacs 26.1 From: Ricardo Wurmus To: Subject: [PATCH] gnu: Add r-pore. X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Mon, 3 Sep 2018 17:22:29 +0200 Message-ID: MIME-Version: 1.0 Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable X-Originating-IP: [141.80.113.103] X-TM-AS-Product-Ver: SMEX-12.5.0.1300-8.5.1010-24072.000 X-TM-AS-Result: No-5.503900-8.000000-10 X-TMASE-MatchedRID: EG4tJ9m3jKw4HKI/yaqRmxD3+0w1DhqKD6NL4tGmXzX2Jzqp3fkNE+8K X8c9rT6n94kvTNM1tWdX/sAhRmSCr8kwYM+oZdHXsyNb+yeIRArFPFYXCE9ETVc/CedjlcvkxUk hFMO+oXucWctrJ/+/VtQlcRJrYKUrupptyy2mu+4o0OKLHX2pga7tzl8n4dIAS4KPPiCB23Dtk5 0s3OrzO1ob33+ep/4pW8Lkyys1bmI9bkALpRl40ozb2GR6Ttd3WOr7yj0LesWbKItl61J/ySKve Q4wmYdMiShoqGLL59pWdFebWIc3VsRB0bsfrpPI34T9cYMsdwxj4zkvFsqc7uqhfrjzdV+oKhvE aDbSIbt8GhV3cpaD6ZaCVeHDFqhBzrVocPNwzOAD6eLOJh3nl95VQwC+Xty2tapAbr24jYEP8SJ nCqH9YGXbG4DW38gLKk9QAicp1i/1q9NPVpN/dxpeoCcJ3+rq X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.503900-8.000000 X-TMASE-Version: SMEX-12.5.0.1300-8.5.1010-24072.000 X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: 32587 Cc: 32587@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) Hi, thanks for the patch! > + > +(define-public r-pore > + (package > + (name "r-pore") > + (version "0.24") > + (source > + (origin > + (method url-fetch) > + (uri (string-append > + "https://sourceforge.net/projects/rpore/files/"version"/poR= e_"version".tar.gz")) Please use mirror://sourceforge/ here. > + (sha256 > + (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv"))= )) > + (properties `((upstream-name . "poRe"))) > + (build-system r-build-system) > + (native-inputs > + `(("r-rhdf5" ,r-rhdf5) > + ("r-shiny" ,r-shiny) > + ("r-svdialogs" ,r-svdialogs) > + ("r-data-table" ,r-data-table) > + ("r-bit64" ,r-bit64))) Are you sure these should be native-inputs? They probably should be propagated inputs, because they should be installed together with the =E2=80=9Cr-pore=E2=80=9D package. Please also sort these inputs alphabetically. > + (home-page "https://sourceforge.net/projects/rpore/files/") Please use =E2=80=9Chttps://sourceforge.net/projects/rpore=E2=80=9D. > + (synopsis "This R package enable visualisation of nanopore sequencin= g data") Please use =E2=80=9CVisualize Nanopore sequencing data=E2=80=9D. > + (description > + "The Oxford Nanopore MinION is a revolutionary sequencer with a uni= que model of data > +delivery, requiring novel tools for the novice user. This package enabl= es > +organisation and visualisation of MinION data.") Please try to avoid marketing terms such as =E2=80=9Crevolutionary=E2=80=9D= , =E2=80=9Cunique=E2=80=9D, =E2=80=9Cnovel=E2=80=9D etc. Could you try to come up with a description t= hat better describes the features of the poRe package? Here=E2=80=99s a draft: This package provides graphical user interfaces to organize and visualize Nanopore sequencing data. > + (license license:gpl3))) I don=E2=80=99t think this is correct. The DESCRIPTION file says =E2=80=9C= BSD=E2=80=9D, but fails to state the variant. I have opened an issue about this here: https://github.com/mw55309/poRe_docs/issues/10 Could you please send an updated patch? -- Ricardo From debbugs-submit-bounces@debbugs.gnu.org Tue Sep 11 10:55:04 2018 Received: (at 32587) by debbugs.gnu.org; 11 Sep 2018 14:55:04 +0000 Received: from localhost ([127.0.0.1]:37184 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzk4G-0003sX-8e for submit@debbugs.gnu.org; Tue, 11 Sep 2018 10:55:04 -0400 Received: from sinope02.bbbm.mdc-berlin.de ([141.80.25.24]:37794) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fzk4D-0003ry-P1 for 32587@debbugs.gnu.org; Tue, 11 Sep 2018 10:55:02 -0400 Received: from localhost (localhost [127.0.0.1]) by sinope02.bbbm.mdc-berlin.de (Postfix) with ESMTP id 8E9B6131058D for <32587@debbugs.gnu.org>; Tue, 11 Sep 2018 16:55:00 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:mime-version:x-mailer:message-id:date :date:subject:subject:from:from:received:received:received; s= mdc; t=1536677695; x=1538492096; bh=jEmfmqAgIoWS0qXHNlBeQBKvh9oG 9Ah0TyXCO3StWZo=; b=DGBdgp07ei4MWPhjNAFVyKs1sZykRGrEY1Zy7iJHRK/X 9qV+pUz6IVF7+r50qaQR5zBBKo/Hc73kvVz1QjNj22kwE3DwLxnV7+xF7nKDvKYn ycb0NINoaMsCad7qduyqTX8KSRiTStYbDWxyBZ+X6ny/tWXrCVZwmOawQdM/w8Y= X-Virus-Scanned: amavisd-new at mdc-berlin.de Received: from sinope02.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (sinope02.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id mDRELTVsRIBb for <32587@debbugs.gnu.org>; Tue, 11 Sep 2018 16:54:55 +0200 (CEST) Received: from SW-IT-P-CAS1.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-SHA384 (256/256 bits)) (No client certificate requested) by sinope02.bbbm.mdc-berlin.de (Postfix) with ESMTPS for <32587@debbugs.gnu.org>; Tue, 11 Sep 2018 16:54:55 +0200 (CEST) Received: from biadmin-KVM.nat (141.80.113.106) by SW-IT-P-CAS1.mdc-berlin.net (141.80.113.53) with Microsoft SMTP Server (TLS) id 14.3.408.0; Tue, 11 Sep 2018 16:54:54 +0200 From: pimi To: <32587@debbugs.gnu.org> Subject: [PATCH] gnu: Add r-pore. Date: Tue, 11 Sep 2018 16:54:32 +0200 Message-ID: <20180911145432.3477-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.17.1 MIME-Version: 1.0 Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-TM-AS-Product-Ver: SMEX-12.5.0.1300-8.5.1010-24088.000 X-TM-AS-Result: No-0.517800-8.000000-10 X-TMASE-MatchedRID: riRbj5ZX+8p7qToVEfwBPAPZZctd3P4B63/AmkBiT06fLMek9g1n9Acs lYpo5iST0EdJ1p8GY2DsZX3M9mdWSpsYswdXk5rLdu0sr+M0vAtKPIx+MJF9oxHfiujuTbedUa4 4fAvDMHeyEiC7P83+WTgMW+VOQILnjQyf9QArOhRdnSd5JiRhlljq+8o9C3rFmyiLZetSf8mfop 0ytGwvXiq2rl3dzGQ19+9ZqEp9FTglc2HFGNNRXmuSchU60mWW3GuXr8ATt8mUl3GsuM2LIJmTb /rpwTVOjX1nToM1xvFfwpLAI0xHdE/P8/TzflhY+VJnxmP/MdUb1mWuENC5Oqcmqg40BkLbjine MlypRVEY61dnw7QU7Pqy+VVvqH2X X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.517800-8.000000 X-TMASE-Version: SMEX-12.5.0.1300-8.5.1010-24088.000 X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 32587 Cc: pimi X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) gnu/packages/bioinformatics.scm (r-pore): New variable. --- gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f6410c3ca..49ed19535 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13699,3 +13699,31 @@ are highly customizable. Currently, it is possible to plot: bigwig, bed (many options), bedgraph, links (represented as arcs), and Hi-C matrices. pyGenomeTracks can make plots with or without Hi-C data.") (license license:gpl3+))) + +(define-public r-pore + (package + (name "r-pore") + (version "0.24") + (source + (origin + (method url-fetch) + (uri + (string-append + "mirror://sourceforge/projects/rpore/files/"version"/poRe_"version".tar.gz")) + (sha256 + (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv")))) + (properties `((upstream-name . "poRe"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bit64" ,r-bit64) + ("r-data-table" ,r-data-table) + ("r-rhdf5" ,r-rhdf5) + ("r-shiny" ,r-shiny) + ("r-svdialogs" ,r-svdialogs))) + (home-page "https://sourceforge.net/projects/rpore") + (synopsis "Visualize Nanopore sequencing data") + (description + "This package provides graphical user interfaces to organize and visualize Nanopore +sequencing data.") + ;;license unclear https://github.com/mw55309/poRe_docs/issues/10 + (license license:bsd-3))) -- 2.17.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Sep 13 13:02:26 2018 Received: (at control) by debbugs.gnu.org; 13 Sep 2018 17:02:26 +0000 Received: from localhost ([127.0.0.1]:39528 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1g0V0a-0002xS-HK for submit@debbugs.gnu.org; Thu, 13 Sep 2018 13:02:26 -0400 Received: from sender-of-o51.zoho.com ([135.84.80.216]:21096) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1g0V0Z-0002xK-0y for control@debbugs.gnu.org; Thu, 13 Sep 2018 13:02:23 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1536858140; cv=none; d=zoho.com; s=zohoarc; b=oqQbFZL6AUAcdF9ykmr3O0oHXxV+etTWpzFwTu8mTi2odl7nhg5IW0dp1dykMJ5TuU4qn6M4lNsEhyyJWIzpTwUPA/kJwhivX87oVC8uBQGObqALaTzftmP5lH8jy5mtpl+fLNPAhkzIVKpdKplkM4ueQipqmI4AKW2vcrq0tqk= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zoho.com; s=zohoarc; t=1536858140; h=Date:From:Message-ID:Subject:To:ARC-Authentication-Results; bh=rSKENn3SDT56cDJPWruCrdWSW3W7lSUMSypKniUT4Lw=; b=gi4+HnFgfFBPucfzkU7SH1xL0JPMoSWEiIeSqmES4AvswpvUt4Vs5/4g304e+3ZNg5cWLCOG2GiaK8CkIMaQxcdwHQMiWyiXPqltseDAWbtThZgyRpIbU6X16xqNkvEHDT7A5KjZdUEUrMHsjMGa3AAhWNj/h70OZr4+lb8qvp0= ARC-Authentication-Results: i=1; mx.zoho.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1536858140; s=zoho; d=elephly.net; i=rekado@elephly.net; h=Date:To:From:Message-ID:Subject; l=15; bh=rSKENn3SDT56cDJPWruCrdWSW3W7lSUMSypKniUT4Lw=; b=XKrZf2VcGiDveHT+Ggf5xUzUO47RYW+Ni2baKxe5FE5D58bKY5TDVOnV5VF3A0p1 NRdTjgGtVCWi1QcLe48drxxHY/+lQQLanaPdXF0wD3czOdCogRCvZM9/LUwPWtWPjSb yYG4OL8MSRn1gm/PYTn+St2XHf0tpbEEvwJz+w2c= Received: from localhost (port-92-200-33-76.dynamic.qsc.de [92.200.33.76]) by mx.zohomail.com with SMTPS id 1536858138599295.69232138695656; Thu, 13 Sep 2018 10:02:18 -0700 (PDT) Date: Thu, 13 Sep 2018 19:02:15 +0200 To: control@debbugs.gnu.org From: Ricardo Wurmus Message-ID: <165d3e227e9.630907442054671123.2886074654087780988@zoho.com> Subject: control message for bug #32587 X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) owner 32587 ! From debbugs-submit-bounces@debbugs.gnu.org Fri Sep 21 08:29:25 2018 Received: (at 32587-done) by debbugs.gnu.org; 21 Sep 2018 12:29:25 +0000 Received: from localhost ([127.0.0.1]:47718 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1g3KYm-00056l-Jk for submit@debbugs.gnu.org; Fri, 21 Sep 2018 08:29:25 -0400 Received: from eggs.gnu.org ([208.118.235.92]:41084) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1g3KYk-00056Y-R4 for 32587-done@debbugs.gnu.org; Fri, 21 Sep 2018 08:29:23 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1g3KYb-0006tO-Nx for 32587-done@debbugs.gnu.org; Fri, 21 Sep 2018 08:29:17 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00 autolearn=disabled version=3.3.2 Received: from fencepost.gnu.org ([2001:4830:134:3::e]:34986) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1g3KYY-0006qU-JY; Fri, 21 Sep 2018 08:29:12 -0400 Received: from [193.50.110.247] (port=58262 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1g3KYY-0005Gd-AT; Fri, 21 Sep 2018 08:29:10 -0400 From: ludo@gnu.org (Ludovic =?utf-8?Q?Court=C3=A8s?=) To: pimi Subject: Re: [bug#32587] [PATCH] gnu: Add r-pore. References: <20180830103703.10473-1-madalinionel.patrascu@mdc-berlin.de> <20180911145432.3477-1-madalinionel.patrascu@mdc-berlin.de> Date: Fri, 21 Sep 2018 14:29:08 +0200 In-Reply-To: <20180911145432.3477-1-madalinionel.patrascu@mdc-berlin.de> (pimi's message of "Tue, 11 Sep 2018 16:54:32 +0200") Message-ID: <87worf11bf.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 2001:4830:134:3::e X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: 32587-done Cc: 32587-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) Hello, pimi skribis: > gnu/packages/bioinformatics.scm (r-pore): New variable. [...] > + (string-append > + "mirror://sourceforge/projects/rpore/files/"version"/poRe_"vers= ion".tar.gz")) I fixed the URL, clarified the comment about the license, and committed. Thanks! Ludo=E2=80=99. From unknown Tue Jun 24 10:31:20 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 20 Oct 2018 11:24:05 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator