From unknown Mon Jun 23 20:18:30 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#32568] [PATCH] gnu: Add r-abctools. Resent-From: pimi Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 29 Aug 2018 07:40:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 32568 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 32568@debbugs.gnu.org Cc: pimi X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.15355283992401 (code B ref -1); Wed, 29 Aug 2018 07:40:02 +0000 Received: (at submit) by debbugs.gnu.org; 29 Aug 2018 07:39:59 +0000 Received: from localhost ([127.0.0.1]:36343 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fuv55-0000cf-57 for submit@debbugs.gnu.org; Wed, 29 Aug 2018 03:39:59 -0400 Received: from eggs.gnu.org ([208.118.235.92]:41834) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fuv53-0000cT-GL for submit@debbugs.gnu.org; Wed, 29 Aug 2018 03:39:57 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fuv4x-0004X6-5X for submit@debbugs.gnu.org; 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Wed, 29 Aug 2018 09:39:38 +0200 (CEST) Received: from biadmin-KVM.nat (141.80.113.106) by SW-IT-P-CAS1.mdc-berlin.net (141.80.113.53) with Microsoft SMTP Server (TLS) id 14.3.408.0; Wed, 29 Aug 2018 09:39:30 +0200 From: pimi Date: Wed, 29 Aug 2018 09:39:17 +0200 Message-ID: <20180829073917.14129-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.17.1 MIME-Version: 1.0 Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-TM-AS-Product-Ver: SMEX-12.5.0.1300-8.5.1010-24060.005 X-TM-AS-Result: No-0.843600-8.000000-10 X-TMASE-MatchedRID: GOhvqnuss097qToVEfwBPAPZZctd3P4BxNK79ogfIKlfSPKGP39CrrsG +ASqq0/TL/dbJPlqSF15t65VsLRmMS95uXownWhR8pRHzcG+oi3eowaCYuJ2SxHfiujuTbedQnI NfdDRtC4VIH5hlcNxZbQiiR2oVXss16b69Mt9foKeAiCmPx4NwBnUJ0Ek6yhjxEHRux+uk8jQ9T RN0mhS17VTJ/cL4Kae4wurowKBEPFsdA45W4otR5QerGEwzak17IW3hQJxVBp9LtzbsgfWkCg8D mk+8GVlHvdsUm95ruWgyozNAPq7ZYISrdkIFqeuO4Y2dUBhL/BTBYT7RGXoWxJAEJH0NuHTrLqF EXfJX3A= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.843600-8.000000 X-TMASE-Version: SMEX-12.5.0.1300-8.5.1010-24060.005 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Received-From: 2001:4830:134:3::11 X-Spam-Score: -5.0 (-----) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) gnu/packages/cran.scm (r-abctools): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ebc15e940..b6667789c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4993,3 +4993,28 @@ parameter inference via random forests. This machine learning tool named random forests (RF) can conduct selection among the highly complex models covered by ABC algorithms.") (license license:gpl2+))) + +(define-public r-abctools + (package + (name "r-abctools") + (version "1.1.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "abctools" version)) + (sha256 + (base32 "07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97")))) + (build-system r-build-system) + (propagated-inputs + `(("r-abc" ,r-abc) + ("r-abind" ,r-abind) + ("r-hmisc" ,r-hmisc) + ("r-plyr" ,r-plyr))) + (home-page "https://github.com/dennisprangle/abctools/") + (synopsis "Tools for ABC analyses") + (description + "This @code{r-abctools} package provides tools for approximate Bayesian computation +including summary statistic selection and assessing coverage. This includes +recent dimension reduction algorithms to tune the choice of summary statistics, +and coverage methods to tune the choice of threshold.") + (license license:gpl2+))) -- 2.17.1 From unknown Mon Jun 23 20:18:30 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: pimi Subject: bug#32568: closed (Re: [bug#32568] [PATCH] gnu: Add r-abctools.) Message-ID: References: <87worxiscy.fsf@gnu.org> <20180829073917.14129-1-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 32568 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 32568@debbugs.gnu.org Date: Fri, 07 Sep 2018 09:13:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1536311582-15358-1" This is a multi-part message in MIME format... ------------=_1536311582-15358-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #32568: [PATCH] gnu: Add r-abctools. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 32568@debbugs.gnu.org. --=20 32568: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D32568 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1536311582-15358-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 32568-done) by debbugs.gnu.org; 7 Sep 2018 09:12:25 +0000 Received: from localhost ([127.0.0.1]:48773 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fyCoT-0003yu-Dn for submit@debbugs.gnu.org; Fri, 07 Sep 2018 05:12:25 -0400 Received: from eggs.gnu.org ([208.118.235.92]:59352) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fyCoS-0003yi-88 for 32568-done@debbugs.gnu.org; Fri, 07 Sep 2018 05:12:24 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fyCoJ-0007fs-0j for 32568-done@debbugs.gnu.org; Fri, 07 Sep 2018 05:12:18 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00 autolearn=disabled version=3.3.2 Received: from fencepost.gnu.org ([2001:4830:134:3::e]:37906) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fyCoI-0007fT-Rc; Fri, 07 Sep 2018 05:12:14 -0400 Received: from [193.50.110.124] (port=36414 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1fyCoI-0004R5-Gb; Fri, 07 Sep 2018 05:12:14 -0400 From: ludo@gnu.org (Ludovic =?utf-8?Q?Court=C3=A8s?=) To: pimi Subject: Re: [bug#32568] [PATCH] gnu: Add r-abctools. References: <20180829073917.14129-1-madalinionel.patrascu@mdc-berlin.de> Date: Fri, 07 Sep 2018 11:12:13 +0200 In-Reply-To: <20180829073917.14129-1-madalinionel.patrascu@mdc-berlin.de> (pimi's message of "Wed, 29 Aug 2018 09:39:17 +0200") Message-ID: <87worxiscy.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 2001:4830:134:3::e X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: 32568-done Cc: 32568-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) pimi skribis: > gnu/packages/cran.scm (r-abctools): New variable. Applied! ------------=_1536311582-15358-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 29 Aug 2018 07:39:59 +0000 Received: from localhost ([127.0.0.1]:36343 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fuv55-0000cf-57 for submit@debbugs.gnu.org; Wed, 29 Aug 2018 03:39:59 -0400 Received: from eggs.gnu.org ([208.118.235.92]:41834) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fuv53-0000cT-GL for submit@debbugs.gnu.org; Wed, 29 Aug 2018 03:39:57 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fuv4x-0004X6-5X for submit@debbugs.gnu.org; Wed, 29 Aug 2018 03:39:52 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=0.8 required=5.0 tests=BAYES_50,T_DKIM_INVALID autolearn=disabled version=3.3.2 Received: from lists.gnu.org ([2001:4830:134:3::11]:49129) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fuv4w-0004Wy-W1 for submit@debbugs.gnu.org; Wed, 29 Aug 2018 03:39:51 -0400 Received: from eggs.gnu.org ([2001:4830:134:3::10]:34574) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fuv4w-0003gs-4d for guix-patches@gnu.org; Wed, 29 Aug 2018 03:39:50 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fuv4r-0004VF-4U for guix-patches@gnu.org; Wed, 29 Aug 2018 03:39:50 -0400 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:43962) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fuv4q-0004Uk-Sj for guix-patches@gnu.org; Wed, 29 Aug 2018 03:39:45 -0400 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 975E4A69F25 for ; Wed, 29 Aug 2018 09:39:43 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:mime-version:x-mailer:message-id:date :date:subject:subject:from:from:received:received:received; s= mdc; t=1535528378; x=1537342779; bh=vl0nZRrvQzTKWjjoGgFJQy8YI7qn cn/wox+p+p3gK4Y=; b=UiG0Pyqqi8x9QtF5pjNdlPCAyB3Egx2/eRHZ8YDtCZMb jKG3vbDG+FR2m8MRneENJ797aorbJdxx3JCCBibMKZuBpqcW2QOwY9eHase5xl8m JOFuSX2pLnZzWsf3H8CbZ5jdh3th1S4MeeN7JURV6kdpAIzYrJDfsmnwdKO6Nw8= X-Virus-Scanned: amavisd-new at mdc-berlin.de Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id 1jZTNdPBg_Tn for ; Wed, 29 Aug 2018 09:39:38 +0200 (CEST) Received: from SW-IT-P-CAS1.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-SHA384 (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Wed, 29 Aug 2018 09:39:38 +0200 (CEST) Received: from biadmin-KVM.nat (141.80.113.106) by SW-IT-P-CAS1.mdc-berlin.net (141.80.113.53) with Microsoft SMTP Server (TLS) id 14.3.408.0; Wed, 29 Aug 2018 09:39:30 +0200 From: pimi To: Subject: [PATCH] gnu: Add r-abctools. Date: Wed, 29 Aug 2018 09:39:17 +0200 Message-ID: <20180829073917.14129-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.17.1 MIME-Version: 1.0 Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-TM-AS-Product-Ver: SMEX-12.5.0.1300-8.5.1010-24060.005 X-TM-AS-Result: No-0.843600-8.000000-10 X-TMASE-MatchedRID: GOhvqnuss097qToVEfwBPAPZZctd3P4BxNK79ogfIKlfSPKGP39CrrsG +ASqq0/TL/dbJPlqSF15t65VsLRmMS95uXownWhR8pRHzcG+oi3eowaCYuJ2SxHfiujuTbedQnI NfdDRtC4VIH5hlcNxZbQiiR2oVXss16b69Mt9foKeAiCmPx4NwBnUJ0Ek6yhjxEHRux+uk8jQ9T RN0mhS17VTJ/cL4Kae4wurowKBEPFsdA45W4otR5QerGEwzak17IW3hQJxVBp9LtzbsgfWkCg8D mk+8GVlHvdsUm95ruWgyozNAPq7ZYISrdkIFqeuO4Y2dUBhL/BTBYT7RGXoWxJAEJH0NuHTrLqF EXfJX3A= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.843600-8.000000 X-TMASE-Version: SMEX-12.5.0.1300-8.5.1010-24060.005 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Received-From: 2001:4830:134:3::11 X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: submit Cc: pimi X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) gnu/packages/cran.scm (r-abctools): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ebc15e940..b6667789c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4993,3 +4993,28 @@ parameter inference via random forests. This machine learning tool named random forests (RF) can conduct selection among the highly complex models covered by ABC algorithms.") (license license:gpl2+))) + +(define-public r-abctools + (package + (name "r-abctools") + (version "1.1.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "abctools" version)) + (sha256 + (base32 "07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97")))) + (build-system r-build-system) + (propagated-inputs + `(("r-abc" ,r-abc) + ("r-abind" ,r-abind) + ("r-hmisc" ,r-hmisc) + ("r-plyr" ,r-plyr))) + (home-page "https://github.com/dennisprangle/abctools/") + (synopsis "Tools for ABC analyses") + (description + "This @code{r-abctools} package provides tools for approximate Bayesian computation +including summary statistic selection and assessing coverage. This includes +recent dimension reduction algorithms to tune the choice of summary statistics, +and coverage methods to tune the choice of threshold.") + (license license:gpl2+))) -- 2.17.1 ------------=_1536311582-15358-1--