From unknown Mon Jun 23 09:36:42 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#32490 <32490@debbugs.gnu.org> To: bug#32490 <32490@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-abcanalysis. Reply-To: bug#32490 <32490@debbugs.gnu.org> Date: Mon, 23 Jun 2025 16:36:42 +0000 retitle 32490 [PATCH] gnu: Add r-abcanalysis. reassign 32490 guix-patches submitter 32490 pimi severity 32490 normal tag 32490 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Tue Aug 21 11:21:44 2018 Received: (at submit) by debbugs.gnu.org; 21 Aug 2018 15:21:45 +0000 Received: from localhost ([127.0.0.1]:56900 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fs8TY-0007eS-9X for submit@debbugs.gnu.org; Tue, 21 Aug 2018 11:21:44 -0400 Received: from eggs.gnu.org ([208.118.235.92]:58219) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fs55t-00025t-Iv for submit@debbugs.gnu.org; Tue, 21 Aug 2018 07:45:06 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fs55n-0001gh-Dd for submit@debbugs.gnu.org; Tue, 21 Aug 2018 07:45:00 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: *** X-Spam-Status: No, score=3.3 required=5.0 tests=BAYES_50, MIME_CHARSET_FARAWAY, T_DKIM_INVALID autolearn=disabled version=3.3.2 Received: from lists.gnu.org ([2001:4830:134:3::11]:58410) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fs55n-0001fE-8O for submit@debbugs.gnu.org; Tue, 21 Aug 2018 07:44:59 -0400 Received: from eggs.gnu.org ([2001:4830:134:3::10]:50937) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fs55m-00051o-5i for guix-patches@gnu.org; Tue, 21 Aug 2018 07:44:59 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fs55i-0001Fp-3M for guix-patches@gnu.org; Tue, 21 Aug 2018 07:44:58 -0400 Received: from venus.bbbm.mdc-berlin.de ([141.80.25.30]:43326) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fs55h-00018Z-L7 for guix-patches@gnu.org; Tue, 21 Aug 2018 07:44:54 -0400 Received: from localhost (localhost [127.0.0.1]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 9E80038111F for ; Tue, 21 Aug 2018 13:44:51 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1534851891; x=1536666292; bh=Plk1sOzQFye2w4cT5aBoP0eMy6CCGPBjo/rCSKR2tAM=; b=pWWxoPd14XiN OLtlbskxZRaw86/laYP7eu2TfhqdSHO105CjbuPXUH9AEAkby1p51Gq9ZhgQF+8D mO9i7JGvjsXBuP2Z9uXLlUcw+3ixAUyCjPmkOTH5pSFd2+yaNr25p82KwzVmOQL9 +B97K5WL//zXYd9l30MQ5Sbe4V029YU= X-Virus-Scanned: amavisd-new at mdc-berlin.de Received: from venus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (venus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id H7htXD6ZZT2l for ; Tue, 21 Aug 2018 13:44:51 +0200 (CEST) Received: from SW-IT-P-CAS4.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-SHA384 (256/256 bits)) (No client certificate requested) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Tue, 21 Aug 2018 13:44:51 +0200 (CEST) Received: from localhost.localdomain (141.80.245.69) by SW-IT-P-CAS4.mdc-berlin.net (141.80.113.59) with Microsoft SMTP Server (TLS) id 14.3.408.0; Tue, 21 Aug 2018 13:44:49 +0200 From: pimi To: Subject: [PATCH] gnu: Add r-abcanalysis. Date: Tue, 21 Aug 2018 13:44:14 +0200 Message-ID: <20180821114414.21031-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.17.1 MIME-Version: 1.0 Content-Type: text/plain; charset="yes" X-Originating-IP: [141.80.245.69] X-TM-AS-Product-Ver: SMEX-12.5.0.1300-8.5.1010-24044.006 X-TM-AS-Result: No-6.472600-8.000000-10 X-TMASE-MatchedRID: NB29Ml8pA597qToVEfwBPAPZZctd3P4BLC92/N1OWlnJyYU2J054PWB5 N6RCXcCHppR2x0hY+75p0oDM6nL2lk6cZmu8CZmKMKPrF7dK57MQtuqs6BbPJzbxQNnQ0Jyf/IA c7dXVIpOcao/IHgMevrGcuoYQDeqVGAdnzrnkM48LbigRnpKlKTpcQTtiHDgWCP+1J3wZc/3MRd heXtEJ8RcPTjE3F6564ohLEaTfMH47BKizdBi81Q== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.472600-8.000000 X-TMASE-Version: SMEX-12.5.0.1300-8.5.1010-24044.006 Content-Transfer-Encoding: quoted-printable X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Received-From: 2001:4830:134:3::11 X-Spam-Score: -5.0 (-----) X-Debbugs-Envelope-To: submit X-Mailman-Approved-At: Tue, 21 Aug 2018 11:21:42 -0400 Cc: pimi X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -6.0 (------) gnu/packages/bioinformatics.scm (r-abcanalysis): New variable. --- gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatic= s.scm index dce8ab62f..e6b6bbaba 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11,6 +11,7 @@ ;;; Copyright =C2=A9 2017 Arun Isaac ;;; Copyright =C2=A9 2018 Joshua Sierles, Nextjournal ;;; Copyright =C2=A9 2018 G=C3=A1bor Boskovits +;;; Copyright =C2=A9 2018 M=C4=83d=C4=83lin Ionel Patra=C8=99cu ;;; ;;; This file is part of GNU Guix. ;;; @@ -13406,3 +13407,27 @@ conversions, region filtering, FASTA sequence ex= traction and more.") ;; gffread is under Expat, but gclib is under Artistic 2.0 (license (list license:expat license:artistic2.0))))) + +(define-public r-abcanalysis + (package + (name "r-abcanalysis") + (version "1.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ABCanalysis" version)) + (sha256 + (base32 "0wac1ksmnxa36v99ca4hv8k0rsh3igwpcllmlv9wf7i9kgqviqwi"))= )) + (properties `((upstream-name . "ABCanalysis"))) + (build-system r-build-system) + (propagated-inputs `(("r-plotrix" ,r-plotrix))) + (home-page "https://www.uni-marburg.de/fb12/arbeitsgruppen/datenbion= ik/software-en") + (synopsis "Computed ABC Analysis") + (description + "Multivariate data sets often differ in several factors or derived = statistical +parameters, which have to be selected for a valid interpretation. Basin= g this +selection on traditional statistical limits leads occasionally to the pe= rception +of losing information from a data set. This package provides tools to c= alculate +these limits on the basis of the mathematical properties of the distribu= tion of +the analyzed items.") + (license license:gpl3))) --=20 2.17.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Aug 23 16:29:43 2018 Received: (at 32490-done) by debbugs.gnu.org; 23 Aug 2018 20:29:43 +0000 Received: from localhost ([127.0.0.1]:59124 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fswEg-0006L6-UX for submit@debbugs.gnu.org; Thu, 23 Aug 2018 16:29:43 -0400 Received: from out1-smtp.messagingengine.com ([66.111.4.25]:57337) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1fswEd-0006Ki-5X; Thu, 23 Aug 2018 16:29:40 -0400 Received: from compute4.internal (compute4.nyi.internal [10.202.2.44]) by mailout.nyi.internal (Postfix) with ESMTP id F1F4F22008; Thu, 23 Aug 2018 16:29:38 -0400 (EDT) Received: from mailfrontend1 ([10.202.2.162]) by compute4.internal (MEProxy); Thu, 23 Aug 2018 16:29:38 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=famulari.name; h=cc:content-type:date:from:in-reply-to:message-id:mime-version :references:subject:to:x-me-sender:x-me-sender:x-sasl-enc; s= mesmtp; bh=u4pHi2HT4yEfDEhCCHG+hTlcGvbyiEwQ7XpoMxKjVnU=; b=Pb5K+ aMG1stKO4Xs6QPOnfMvYvP/eHtjARhPboz3uJ8Pj/YcsNVDc8tEUSMoEDGUKN3xI wbYEGvWg1cBPUnk3Q+zjsfJYImA62bAmzNeMFMqGOCnFWrUhUzlP4sJv79ct2c+a tWddqsNTb61iw/YXZLz1nkXm2MM5JpipIZWWU0= DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:date:from:in-reply-to :message-id:mime-version:references:subject:to:x-me-sender :x-me-sender:x-sasl-enc; s=fm3; bh=u4pHi2HT4yEfDEhCCHG+hTlcGvbyi EwQ7XpoMxKjVnU=; b=c0UW7CZwoLs78jeO05w5qjS1EPQyBlTfu1R7YnQnoW4S/ GO240RJavonUJ2DV5oIAQQEDsN9wuwivrlmlw+lQEx7ejvp6e98K1SmxMP2s0XSy hsJ0vYnCKdR7FzC7C0ZmIFB5dJVPKVSoxuAwmxSXlX9YXV3cL0dxIbdytzF9r7bY CU2Cl8wor6SKhiG6v+D27aKy2t9GpUtBhavHxNbqfYIEsQ8QLX40WwYM6bjsOAv8 /JzMi8GpgoniPvx6P1U3l/5F1ue07sgV8EssHt43abSXffUKwn5yRp+7uS2EIpT0 KwaeEgTP8q0jWZHeHKbXMEuzDKWC+qwwvBZw1fu1g== X-ME-Proxy: X-ME-Sender: Received: from localhost (c-76-124-202-137.hsd1.pa.comcast.net [76.124.202.137]) by mail.messagingengine.com (Postfix) with ESMTPA id B8DC8E490D; Thu, 23 Aug 2018 16:29:37 -0400 (EDT) Date: Thu, 23 Aug 2018 16:29:36 -0400 From: Leo Famulari To: "MadalinIonel.Patrascu@mdc-berlin.de" Subject: Re: [bug#32489] [PATCH] gnu: Add r-miniui. Message-ID: <20180823202936.GA25188@jasmine.lan> References: <20180821100601.20349-1-madalinionel.patrascu@mdc-berlin.de> <20180822020459.GA16402@jasmine.lan> <918DDFCAA65E9447BD6F28DB666521DA97F6CD@DAGONE.mdc-berlin.net> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="5vNYLRcllDrimb99" Content-Disposition: inline In-Reply-To: <918DDFCAA65E9447BD6F28DB666521DA97F6CD@DAGONE.mdc-berlin.net> User-Agent: Mutt/1.10.1 (2018-07-13) X-Spam-Score: 1.8 (+) X-Spam-Report: Spam detection software, running on the system "debbugs.gnu.org", has NOT identified this incoming email as spam. The original message has been attached to this so you can view it or label similar future email. If you have any questions, see the administrator of that system for details. Content preview: On Wed, Aug 22, 2018 at 07:55:59AM +0000, MadalinIonel.Patrascu@mdc-berlin.de wrote: > Hello Leo! > > Sorry about that! > I am new on this thing. > I can send directly to you all the patches. > It is ok? [...] Content analysis details: (1.8 points, 10.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- -0.7 RCVD_IN_DNSWL_LOW RBL: Sender listed at http://www.dnswl.org/, low trust [66.111.4.25 listed in list.dnswl.org] -0.0 SPF_PASS SPF: sender matches SPF record -0.0 SPF_HELO_PASS SPF: HELO matches SPF record 2.5 SUSPICIOUS_RECIPS Similar addresses in recipient list 0.0 T_DKIM_INVALID DKIM-Signature header exists but is not valid X-Debbugs-Envelope-To: 32490-done Cc: 32492@debbugs.gnu.org, 32491@debbugs.gnu.org, "32489@debbugs.gnu.org" <32489-done@debbugs.gnu.org>, 32493@debbugs.gnu.org, 32490-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: 0.8 (/) --5vNYLRcllDrimb99 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On Wed, Aug 22, 2018 at 07:55:59AM +0000, MadalinIonel.Patrascu@mdc-berlin.= de wrote: > Hello Leo! >=20 > Sorry about that!=20 > I am new on this thing. > I can send directly to you all the patches. > It is ok? Thanks! I received your patches and pushed them as commit 16b0e8da48ef9398797a22e274d5fcb37e24e448. --5vNYLRcllDrimb99 Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAABCAAdFiEEsFFZSPHn08G5gDigJkb6MLrKfwgFAlt/GTAACgkQJkb6MLrK fwijCRAApoah6iTVP63ovQVVcamdDQpQp9pssLwlfKxlyPA6xO8uie63TAdhQzJd DaGueCAKdHyBakqSqwI1MbPKdWBRXhhU2LJCW+upvQFDn4bDuS8lD7VeH9Wk+gqV s9Rey/HlD65FING/UgmFJ6PwFF4zknGqPq/5mSgVFuFHVTtpB+7s0Oi8/DF77QWs r2tdUlJtl+q3erh8aEJKe48E1hVjMs1JHS77eO6m6ImPSU1V/hm/H1pwHa83AsLH D5bj+SqdSlMwFHsouw8ZCUMIZvjGNlEfOgo6ZhpQ0tbTp+vPDhDewEt7WNupca0g XjXisiiBzpas7tZH9LCgnsjX/iB2AvGbmtWnCDAqLtW3SXuSc+OXK77W+pSy63kI OKj72t9RkkGfuklH79NCaXFyllKe7DLK1d3TNuxNnPo/XhUEI0iYJ9YJKJgPGChl fdeJbaM/VVXi7s5N7uKg9Zhp+ApK3r/1gu0C75F+BR8rdEMI3btJkDA6t3f+YDex hxEdT0pl5hNP9AZiFilknpfWGdh8vq6t+epnAHWQv/iAFD2QWSIt6WSMfQXfH6wb gTJU/02u7Bii3hzxYDL8vAZqGeUrDzjKZMgqDVMlX8AzjLjrT/SKB+FpHXTco1sG j88oPOJrIo28IhGsedak2GfB7wnkCy8aVhXAHTrlkDqu9/j3Or8= =JWkh -----END PGP SIGNATURE----- --5vNYLRcllDrimb99-- From unknown Mon Jun 23 09:36:42 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 21 Sep 2018 11:24:05 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator