GNU bug report logs - #32259
Add R packages from CRAN

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From: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
To: <32259 <at> debbugs.gnu.org>
Cc: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
Subject: [bug#32259] [PATCH 2/4] gnu: Add r-refgenome.
Date: Tue, 24 Jul 2018 14:22:06 +0200

* gnu/packages/cran.scm (r-refgenome): New variable.
---
 gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index da9b67bff..693a891a0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4678,3 +4678,31 @@ and automatically generate usage notices.")
 @item miscellaneous other utilities.
 @end itemize")
     (license license:gpl2+)))
+
+(define-public r-refgenome
+  (package
+    (name "r-refgenome")
+    (version "1.7.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "refGenome" version))
+       (sha256
+        (base32
+         "15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn"))))
+    (properties `((upstream-name . "refGenome")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-dbi" ,r-dbi)
+       ("r-doby" ,r-doby)
+       ("r-rsqlite" ,r-rsqlite)))
+    (home-page "https://cran.r-project.org/web/packages/refGenome/")
+    (synopsis
+     "Gene and splice site annotation using annotation data from Ensembl and UCSC")
+    (description
+     "This package contains functionality for importing and managing of
+downloaded genome annotation data from the Ensembl genome browser (European
+Bioinformatics Institute) and from the UCSC genome browser (University of
+California, Santa Cruz) and annotation routines for genomic positions and
+splice site positions.")
+    (license license:gpl2)))
-- 
2.18.0

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