GNU bug report logs - #29784
[PATCH 2/2] gnu: Add python-activepapers

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Konrad Hinsen <konrad.hinsen <at> fastmail.net>
Subject: bug#29784: closed (Re: [bug#29784] [PATCH 2/2] gnu: Add
 python-activepapers)
Date: Fri, 22 Dec 2017 08:48:02 +0000

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Your bug report

#29784: [PATCH 2/2] gnu: Add python-activepapers

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 29784 <at> debbugs.gnu.org.

-- 
29784: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=29784
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: ludo <at> gnu.org (Ludovic Courtès)
To: Konrad Hinsen <konrad.hinsen <at> fastmail.net>
Cc: 29784-done <at> debbugs.gnu.org
Subject: Re: [bug#29784] [PATCH 2/2] gnu: Add python-activepapers
Date: Fri, 22 Dec 2017 09:47:46 +0100

Konrad Hinsen <konrad.hinsen <at> fastmail.net> skribis:

> ludovic.courtes <at> inria.fr (Ludovic Courtès) writes:
>
>> Yes.  Before running the GC, you still had the store item with the given
>> hash in your store, the guix-daemon didn’t attempt to fetch it.
>>
>> To avoid this, you can always run:
>>
>>   guix build -S the-package --check
>>
>> before submitting, to force a re-fetch.
>
> OK, good to know!
>
>> Can you resend the patch with the known-good hash?  (Or just the hash if
>> you prefer.)
>
> The good hash is
>
>    12wkhjh90ffipjzv10swndp2xv9hd7xrxvg6v0n4n3i411pj4xb8

Perfect.  Applied, thanks!

Ludo’.

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From: Konrad Hinsen <konrad.hinsen <at> fastmail.net>
To: <guix-patches <at> gnu.org>
Subject: [PATCH 2/2] gnu: Add python-activepapers
Date: Tue, 19 Dec 2017 12:50:22 +0100

 gnu/packages/python.scm | 68 +++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 68 insertions(+)

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 5580b7d50..1a376e04d 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -12000,3 +12000,71 @@ particularly convenient for use in tests.")
 (define-public python2-tempdir
   (package-with-python2 python-tempdir))
 
+(define-public python-activepapers
+  (package
+    (name "python-activepapers")
+    (version "0.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "ActivePapers.Py" version))
+       (sha256
+        (base32
+         "02bpx36ixwag1g958plgjwpxaiadsj4669gsnxc8hb5aw2jplnr5"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'delete-python2-code
+           (lambda _
+             (for-each delete-file
+                       '("lib/activepapers/builtins2.py"
+                         "lib/activepapers/standardlib2.py"
+                         "lib/activepapers/utility2.py"))))
+         (replace 'check
+           (lambda _
+             (use-modules (srfi srfi-1)
+                          (ice-9 ftw))
+             ;; Deactivate the test cases that download files
+             (setenv "NO_NETWORK_ACCESS" "1")
+             ;; For some strange reason, some tests fail if nosetests runs all
+             ;; test modules in a single execution. They pass if each test
+             ;; module is run individually.
+             (every zero?
+                    (map (lambda (filename)
+                           (system* "nosetests"
+                                    (string-append "tests/" filename)))
+                         (scandir "tests"
+                                  (lambda (filename)
+                                    (string-suffix? ".py" filename))))))))))
+    (native-inputs
+     `(("python-tempdir" ,python-tempdir)
+       ("python-nose" ,python-nose)))
+    (propagated-inputs
+     `(("python-h5py" ,python-h5py)))
+    (home-page "http://www.activepapers.org/")
+    (synopsis "Executable papers for scientific computing")
+    (description
+     "ActivePapers is a tool for working with executable papers, which
+combine data, code, and documentation in single-file packages,
+suitable for publication as supplementary material or on repositories
+such as figshare or Zenodo.")
+    (properties `((python2-variant . ,(delay python2-activepapers))))
+    (license license:bsd-3)))
+
+(define-public python2-activepapers
+  (let ((base (package-with-python2
+               (strip-python2-variant python-activepapers))))
+    (package
+      (inherit base)
+      (arguments
+       (substitute-keyword-arguments (package-arguments base)
+         ((#:phases phases)
+          `(modify-phases ,phases
+             (delete 'delete-python2-code)
+             (add-after 'unpack 'delete-python3-code
+               (lambda _
+                 (for-each delete-file
+                           '("lib/activepapers/builtins3.py"
+                             "lib/activepapers/standardlib3.py"
+                             "lib/activepapers/utility3.py")))))))))))
-- 
2.15.1

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