GNU bug report logs - #29394
[PATCH 00/12] Add Java dependencies for FastQC

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#29394: closed ([PATCH 00/12] Add Java dependencies for FastQC)
Date: Mon, 27 Nov 2017 20:57:01 +0000

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Your message dated Mon, 27 Nov 2017 21:56:21 +0100
with message-id <87609vqw3u.fsf <at> mdc-berlin.de>
and subject line Re: [PATCH 12/12] gnu: Add java-jbzip2.
has caused the debbugs.gnu.org bug report #29394,
regarding [PATCH 00/12] Add Java dependencies for FastQC
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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From: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH 00/12] Add Java dependencies for FastQC
Date: Wed, 22 Nov 2017 12:21:58 +0100

The following patch series adds dependencies for the popular bioinfo
tool FastQC.

Ricardo Wurmus (12):
  gnu: Add java-snappy-1.
  gnu: Add javacc.
  gnu: Add javacc-4.
  gnu: Add java-commons-jexl-2.
  gnu: java-htsjdk: Update to 2.3.0.
  gnu: Add java-picard.
  gnu: Add java-cofoja.
  gnu: Add java-commons-bcel.
  gnu: Add ant-apache-bcel.
  gnu: Add ant-junit.
  gnu: Add java-picard-1.113.
  gnu: Add java-jbzip2.

 gnu/packages/bioinformatics.scm | 216 +++++++++++++++++++++++++++++++-
 gnu/packages/compression.scm    |  98 +++++++++++++++
 gnu/packages/java.scm           | 268 ++++++++++++++++++++++++++++++++++++++++
 3 files changed, 576 insertions(+), 6 deletions(-)

-- 
2.14.1

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From: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
To: <29394-done <at> debbugs.gnu.org>
Subject: Re: [PATCH 12/12] gnu: Add java-jbzip2.
Date: Mon, 27 Nov 2017 21:56:21 +0100

Pushed them all to the master branch.

-- 
Ricardo

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