GNU bug report logs - #28148
[PATCH] gnu: Add r-annotationfilter.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#28148: closed ([PATCH] gnu: Add r-annotationfilter.)
Date: Sun, 20 Aug 2017 12:03:01 +0000

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Your message dated Sun, 20 Aug 2017 14:02:05 +0200
with message-id <87shgmwis0.fsf <at> elephly.net>
and subject line Re: [PATCH] gnu: Add r-annotationfilter.
has caused the debbugs.gnu.org bug report #28148,
regarding [PATCH] gnu: Add r-annotationfilter.
to be marked as done.

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help-debbugs <at> gnu.org.)


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28148: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=28148
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From: Ricardo Wurmus <rekado <at> elephly.net>
To: guix-patches <at> gnu.org
Cc: Ricardo Wurmus <rekado <at> elephly.net>
Subject: [PATCH] gnu: Add r-annotationfilter.
Date: Sat, 19 Aug 2017 18:03:07 +0200

* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
---
 gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 018a26212..e8e05fff0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8311,6 +8311,30 @@ package, and for letting R applications work on datasets that are larger than
 the available RAM.")
     (license license:artistic2.0)))
 
+(define-public r-annotationfilter
+  (package
+    (name "r-annotationfilter")
+    (version "1.0.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AnnotationFilter" version))
+              (sha256
+               (base32
+                "0pxvswjzwibdfmrkdragxmzcl844z73pmkn82z92wahwa6gjfyi7"))))
+    (properties
+     `((upstream-name . "AnnotationFilter")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-genomicranges" ,r-genomicranges)
+       ("r-lazyeval" ,r-lazyeval)))
+    (home-page "https://github.com/Bioconductor/AnnotationFilter")
+    (synopsis "Facilities for filtering Bioconductor annotation resources")
+    (description
+     "This package provides classes and other infrastructure to implement
+filters for manipulating Bioconductor annotation resources.  The filters are
+used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.")
+    (license license:artistic2.0)))
+
 (define-public emboss
   (package
     (name "emboss")
-- 
2.13.3

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 28148-done <at> debbugs.gnu.org
Subject: Re: [PATCH] gnu: Add r-annotationfilter.
Date: Sun, 20 Aug 2017 14:02:05 +0200

Ricardo Wurmus <rekado <at> elephly.net> writes:

> * gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.

Pushed to master.

-- 
Ricardo

GPG: BCA6 89B6 3655 3801 C3C6  2150 197A 5888 235F ACAC
https://elephly.net

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