From unknown Fri Jun 20 18:11:32 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#28148 <28148@debbugs.gnu.org> To: bug#28148 <28148@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-annotationfilter. Reply-To: bug#28148 <28148@debbugs.gnu.org> Date: Sat, 21 Jun 2025 01:11:32 +0000 retitle 28148 [PATCH] gnu: Add r-annotationfilter. reassign 28148 guix-patches submitter 28148 Ricardo Wurmus severity 28148 normal tag 28148 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Sat Aug 19 12:03:28 2017 Received: (at submit) by debbugs.gnu.org; 19 Aug 2017 16:03:28 +0000 Received: from localhost ([127.0.0.1]:45768 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1dj6Df-0004z5-OF for submit@debbugs.gnu.org; Sat, 19 Aug 2017 12:03:27 -0400 Received: from eggs.gnu.org ([208.118.235.92]:48156) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1dj6De-0004ys-69 for submit@debbugs.gnu.org; Sat, 19 Aug 2017 12:03:26 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1dj6DX-0003sO-V5 for submit@debbugs.gnu.org; Sat, 19 Aug 2017 12:03:21 -0400 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00 autolearn=disabled version=3.3.2 Received: from lists.gnu.org ([2001:4830:134:3::11]:51226) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1dj6DX-0003sI-Rl for submit@debbugs.gnu.org; Sat, 19 Aug 2017 12:03:19 -0400 Received: from eggs.gnu.org ([2001:4830:134:3::10]:39103) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1dj6DW-0006Gq-I6 for guix-patches@gnu.org; Sat, 19 Aug 2017 12:03:19 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1dj6DT-0003q1-Fo for guix-patches@gnu.org; Sat, 19 Aug 2017 12:03:18 -0400 Received: from sender-of-o51.zoho.com ([135.84.80.216]:21015) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1dj6DT-0003pV-9G for guix-patches@gnu.org; Sat, 19 Aug 2017 12:03:15 -0400 Received: from localhost (port-92-200-86-21.dynamic.qsc.de [92.200.86.21]) by mx.zohomail.com with SMTPS id 1503158592285238.16162004135322; Sat, 19 Aug 2017 09:03:12 -0700 (PDT) From: Ricardo Wurmus To: guix-patches@gnu.org Subject: [PATCH] gnu: Add r-annotationfilter. Date: Sat, 19 Aug 2017 18:03:07 +0200 Message-Id: <20170819160307.7631-1-rekado@elephly.net> X-Mailer: git-send-email 2.13.3 X-ZohoMailClient: External X-ZohoMail: Z_26063301 SPT_1 Z_26062608 SPT_0 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 3.x [fuzzy] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-Received-From: 2001:4830:134:3::11 X-Spam-Score: -4.0 (----) X-Debbugs-Envelope-To: submit Cc: Ricardo Wurmus X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -4.0 (----) * gnu/packages/bioinformatics.scm (r-annotationfilter): New variable. --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 018a26212..e8e05fff0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8311,6 +8311,30 @@ package, and for letting R applications work on datasets that are larger than the available RAM.") (license license:artistic2.0))) +(define-public r-annotationfilter + (package + (name "r-annotationfilter") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AnnotationFilter" version)) + (sha256 + (base32 + "0pxvswjzwibdfmrkdragxmzcl844z73pmkn82z92wahwa6gjfyi7")))) + (properties + `((upstream-name . "AnnotationFilter"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomicranges" ,r-genomicranges) + ("r-lazyeval" ,r-lazyeval))) + (home-page "https://github.com/Bioconductor/AnnotationFilter") + (synopsis "Facilities for filtering Bioconductor annotation resources") + (description + "This package provides classes and other infrastructure to implement +filters for manipulating Bioconductor annotation resources. The filters are +used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.") + (license license:artistic2.0))) + (define-public emboss (package (name "emboss") -- 2.13.3 From debbugs-submit-bounces@debbugs.gnu.org Sun Aug 20 08:02:15 2017 Received: (at 28148-done) by debbugs.gnu.org; 20 Aug 2017 12:02:15 +0000 Received: from localhost ([127.0.0.1]:46151 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1djOvm-0002va-Vv for submit@debbugs.gnu.org; Sun, 20 Aug 2017 08:02:15 -0400 Received: from sender-of-o51.zoho.com ([135.84.80.216]:21066) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1djOvl-0002vS-89 for 28148-done@debbugs.gnu.org; Sun, 20 Aug 2017 08:02:13 -0400 Received: from localhost (port-92-200-93-154.dynamic.qsc.de [92.200.93.154]) by mx.zohomail.com with SMTPS id 1503230528548787.7581234043479; Sun, 20 Aug 2017 05:02:08 -0700 (PDT) References: <20170819160307.7631-1-rekado@elephly.net> User-agent: mu4e 0.9.18; emacs 25.2.1 From: Ricardo Wurmus To: 28148-done@debbugs.gnu.org Subject: Re: [PATCH] gnu: Add r-annotationfilter. Message-ID: <87shgmwis0.fsf@elephly.net> In-reply-to: <20170819160307.7631-1-rekado@elephly.net> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Sun, 20 Aug 2017 14:02:05 +0200 MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: 28148-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: 1.0 (+) Ricardo Wurmus writes: > * gnu/packages/bioinformatics.scm (r-annotationfilter): New variable. Pushed to master. -- Ricardo GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC https://elephly.net From unknown Fri Jun 20 18:11:32 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Mon, 18 Sep 2017 11:24:05 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator