GNU bug report logs - #26373
Various improvements to the CRAN importer

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 26373 <at> debbugs.gnu.org
Cc: Ricardo Wurmus <rekado <at> elephly.net>
Subject: bug#26373: [PATCH 1/6] import cran: Exclude experiment packages in predicate "bioconductor-package?".
Date: Wed,  5 Apr 2017 18:42:05 +0200

* guix/import/cran.scm (bioconductor-package?): Exclude experiment packages,
because they cannot be updated with the default bioconductor updater.
---
 guix/import/cran.scm | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index 8e24f6e17..f63d23972 100644
--- a/guix/import/cran.scm
+++ b/guix/import/cran.scm
@@ -429,7 +429,9 @@ dependencies."
                           ;; the Github mirror, so we have to exclude them
                           ;; from the set of bioconductor packages that can be
                           ;; updated automatically.
-                          (not (string-contains uri "/data/annotation/"))))))
+                          (not (string-contains uri "/data/annotation/"))
+                          ;; Experiment packages are in a separate repository.
+                          (not (string-contains uri "/data/experiment/"))))))
     (and (string-prefix? "r-" (package-name package))
          (match (and=> (package-source package) origin-uri)
            ((? string? uri)
-- 
2.12.2

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