GNU bug report logs - #26015
[PATCH] python-rpy2: Propagate python2-singledispatch

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Pjotr Prins <pjotr.guix <at> thebird.nl>
To: guix-patches <at> gnu.org
Cc: Pjotr Prins <pjotr.public01 <at> thebird.nl>
Subject: [PATCH] python-rpy2: Propagate python2-singledispatch
Date: Tue,  7 Mar 2017 10:28:57 +0000

From: Pjotr Prins <pjotr.public01 <at> thebird.nl>

* gnu/packages/python.scm (python-rp2): Fixes availability of singledispatch
when actually using the RPy2 package.
---
 gnu/packages/python.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 5b86980..3b01a9a 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -3836,9 +3836,9 @@ functions.")
 (define-public python2-rpy2
   (let ((rpy2 (package-with-python2 python-rpy2)))
     (package (inherit rpy2)
-      (native-inputs
+      (propagated-inputs
        `(("python2-singledispatch" ,python2-singledispatch)
-         ,@(package-native-inputs rpy2))))))
+         ,@(package-propagated-inputs rpy2))))))
 
 (define-public python-scipy
   (package
-- 
2.8.4

Message #10 received at 26015-done <at> debbugs.gnu.org (full text, mbox):

From: ludo <at> gnu.org (Ludovic Courtès)
To: Pjotr Prins <pjotr.guix <at> thebird.nl>
Cc: Pjotr Prins <pjotr.public01 <at> thebird.nl>, 26015-done <at> debbugs.gnu.org
Subject: Re: bug#26015: [PATCH] python-rpy2: Propagate python2-singledispatch
Date: Tue, 07 Mar 2017 18:11:29 +0100

Pjotr Prins <pjotr.guix <at> thebird.nl> skribis:

> From: Pjotr Prins <pjotr.public01 <at> thebird.nl>
>
> * gnu/packages/python.scm (python-rp2): Fixes availability of singledispatch
> when actually using the RPy2 package.

Applied, thanks!

Ludo'.

Message #13 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Pjotr Prins <pjotr.public12 <at> thebird.nl>
To: 26015 <at> debbugs.gnu.org
Cc: guix-patches <at> gnu.org
Subject: Re: [PATCH] python-rpy2: Propagate python2-singledispatch
Date: Wed, 8 Mar 2017 06:27:33 +0000

Example of what this patch fixes (sorry for the delay):

Traceback (most recent call last):
  File "runserver.py", line 8, in <module>
    from wqflask import app
  File "/gnu/export/local/wrk/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/__init__.py", line 24, in <module>
    import wqflask.views
  File "/gnu/export/local/wrk/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/views.py", line 46, in <module>
    from wqflask.marker_regression import marker_regression
  File "/gnu/export/local/wrk/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/marker_regression/marker_regression.py", line 16, in <module>
    import rpy2.robjects as ro
  File "/home/wrk/opt/genenetwork2-test/lib/python2.7/site-packages/rpy2/robjects/__init__.py", line 18, in <module>
    from rpy2.robjects.robject import RObjectMixin, RObject
  File "/home/wrk/opt/genenetwork2-test/lib/python2.7/site-packages/rpy2/robjects/robject.py", line 8, in <module>
    from . import conversion
  File "/home/wrk/opt/genenetwork2-test/lib/python2.7/site-packages/rpy2/robjects/conversion.py", line 13, in <module>
    from singledispatch import singledispatch
ImportError: No module named singledispatch

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