Subject: 25.0.50; error when installing org from dirty Emacs

From: Rasmus <[email-masked]>
Date: Sat, 15 Aug 2015 18:31:34 +0200

Hi,

1. Start emacs -Q to use build in version of org 
2. Load org: (mapc 'require '(org ob ox-latex))
3. Install org 8.3 via gelpa
4. Start with my "normal" emacs instance and M-x orgstruct.
   I have not found a way to trigger this from a clean emacs...

my version of emacs is GNU Emacs 25.0.50.1 (x86_64-unknown-linux-gnu,
GTK+ Version 3.16.6) of 2015-08-11 on W530.

I hope this is enough info.

Thanks,
Rasmus

Backtrace: 

Debugger entered--Lisp error: (invalid-function org-babel-header-args-safe-fn)
  org-babel-header-args-safe-fn((:cache :colnames :comments :exports :epilogue :hlines :noeval :noweb :noweb-ref :noweb-sep :padline :prologue :rownames :sep :session :tangle :wrap (:eval "never" "query") (:results lambda (str) (not (string-match "file" str))) :width :height :bg :units :pointsize :antialias :quality :compression :res :type :family :title :fonts :version :paper :encoding :pagecentre :colormodel :useDingbats :horizontal))
  byte-code("\301\302\303\304!#\210\305\306\307\310\311\312\313\314\315\316&	\207" [ob-R-safe-header-args put org-babel-default-header-args:R safe-local-variable org-babel-header-args-safe-fn custom-declare-variable org-babel-R-command "R --slave --no-save" "Name of command to use for executing R code." :group org-babel :version "24.1" :type string] 10)
  require(ob-R)
  #[(pair) "A\303@!\211\203\304\305\306	P!!\202%\307\305\310	P!!\210\307\305\311	P!!*\207" [pair lang active symbol-name require intern "ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5]((R . t))
  mapc(#[(pair) "A\303@!\211\203\304\305\306	P!!\202%\307\305\310	P!!\210\307\305\311	P!!*\207" [pair lang active symbol-name require intern "ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5] ((R . t) (latex . t) (fortran . t) (emacs-lisp . t) (C . t) (latex . t) (python . t) (octave . t) (org . t) (awk . t) (shell . t) (calc . t)))
  org-babel-do-load-languages(org-babel-load-languages ((R . t) (latex . t) (fortran . t) (emacs-lisp . t) (C . t) (latex . t) (python . t) (octave . t) (org . t) (awk . t) (shell . t) (calc . t)))
  (lambda nil (setq org-confirm-babel-evaluate nil) (org-babel-do-load-languages (quote org-babel-load-languages) (mapcar (function (lambda (lang) (cons lang t))) (quote (R latex fortran emacs-lisp C latex python octave org awk shell calc)))))()
  eval-after-load-helper("/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
  run-hook-with-args(eval-after-load-helper "/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
  do-after-load-evaluation("/home/rasmus/.emacs.d/elpa/org-20150810/ob.elc")
  require(ob)
  require(ob-R)
  #[(pair) "A\303@!\211\203\304\305\306	P!!\202%\307\305\310	P!!\210\307\305\311	P!!*\207" [pair lang active symbol-name require intern "ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5]((R . t))
  mapc(#[(pair) "A\303@!\211\203\304\305\306	P!!\202%\307\305\310	P!!\210\307\305\311	P!!*\207" [pair lang active symbol-name require intern "ob-" fmakunbound "org-babel-execute:" "org-babel-expand-body:"] 5] ((R . t) (latex . t) (fortran . t) (emacs-lisp . t) (C . t) (latex . t) (python . t) (octave . t) (org . t) (awk . t) (shell . t) (calc . t)))
  org-babel-do-load-languages(org-babel-load-languages ((R . t) (latex . t) (fortran . t) (emacs-lisp . t) (C . t) (latex . t) (python . t) (octave . t) (org . t) (awk . t) (shell . t) (calc . t)))
  custom-initialize-reset(org-babel-load-languages (quote ((emacs-lisp . t))))
  custom-declare-variable(org-babel-load-languages (quote ((emacs-lisp . t))) "Languages which can be evaluated in Org-mode buffers.\nThis list can be used to load support for any of the languages\nbelow, note that each language will depend on a different set of\nsystem executables and/or Emacs modes.  When a language is\n\"loaded\", then code blocks in that language can be evaluated\nwith `org-babel-execute-src-block' bound by default to C-c\nC-c (note the `org-babel-no-eval-on-ctrl-c-ctrl-c' variable can\nbe set to remove code block evaluation from the C-c C-c\nkeybinding.  By default only Emacs Lisp (which has no\nrequirements) is loaded." :group org-babel :set org-babel-do-load-languages :version "24.1" :type (alist :tag "Babel Languages" :key-type (choice (const :tag "Awk" awk) (const :tag "C" C) (const :tag "R" R) (const :tag "Asymptote" asymptote) (const :tag "Calc" calc) (const :tag "Clojure" clojure) (const :tag "CSS" css) (const :tag "Ditaa" ditaa) (const :tag "Dot" dot) (const :tag "Emacs Lisp" emacs-lisp) (const :tag "Forth" forth) (const :tag "Fortran" fortran) (const :tag "Gnuplot" gnuplot) (const :tag "Haskell" haskell) (const :tag "IO" io) (const :tag "J" J) (const :tag "Java" java) (const :tag "Javascript" js) (const :tag "LaTeX" latex) (const :tag "Ledger" ledger) (const :tag "Lilypond" lilypond) (const :tag "Lisp" lisp) (const :tag "Makefile" makefile) (const :tag "Maxima" maxima) (const :tag "Matlab" matlab) (const :tag "Mscgen" mscgen) (const :tag "Ocaml" ocaml) (const :tag "Octave" octave) (const :tag "Org" org) (const :tag "Perl" perl) (const :tag "Pico Lisp" picolisp) (const :tag "PlantUML" plantuml) (const :tag "Python" python) (const :tag "Ruby" ruby) (const :tag "Sass" sass) (const :tag "Scala" scala) (const :tag "Scheme" scheme) (const :tag "Screen" screen) (const :tag "Shell Script" shell) (const :tag "Shen" shen) (const :tag "Sql" sql) (const :tag "Sqlite" sqlite) (const :tag "ebnf2ps" ebnf2ps)) :value-type (boolean :tag "Activate" :value t)))
  byte-code("\300\301\302\303\304\305\306\307\310\311\312\313&\210\300\314\315\316\312\317\310\311\304\320&	\210\321\322\323\"\210\321\324\323\"\207" [custom-declare-variable org-babel-load-languages (quote ((emacs-lisp . t))) "Languages which can be evaluated in Org-mode buffers.\nThis list can be used to load support for any of the languages\nbelow, note that each language will depend on a different set of\nsystem executables and/or Emacs modes.  When a language is\n\"loaded\", then code blocks in that language can be evaluated\nwith `org-babel-execute-src-block' bound by default to C-c\nC-c (note the `org-babel-no-eval-on-ctrl-c-ctrl-c' variable can\nbe set to remove code block evaluation from the C-c C-c\nkeybinding.  By default only Emacs Lisp (which has no\nrequirements) is loaded." :group org-babel :set org-babel-do-load-languages :version "24.1" :type (alist :tag "Babel Languages" :key-type (choice (const :tag "Awk" awk) (const :tag "C" C) (const :tag "R" R) (const :tag "Asymptote" asymptote) (const :tag "Calc" calc) (const :tag "Clojure" clojure) (const :tag "CSS" css) (const :tag "Ditaa" ditaa) (const :tag "Dot" dot) (const :tag "Emacs Lisp" emacs-lisp) (const :tag "Forth" forth) (const :tag "Fortran" fortran) (const :tag "Gnuplot" gnuplot) (const :tag "Haskell" haskell) (const :tag "IO" io) (const :tag "J" J) (const :tag "Java" java) (const :tag "Javascript" js) (const :tag "LaTeX" latex) (const :tag "Ledger" ledger) (const :tag "Lilypond" lilypond) (const :tag "Lisp" lisp) (const :tag "Makefile" makefile) (const :tag "Maxima" maxima) (const :tag "Matlab" matlab) (const :tag "Mscgen" mscgen) (const :tag "Ocaml" ocaml) (const :tag "Octave" octave) (const :tag "Org" org) (const :tag "Perl" perl) (const :tag "Pico Lisp" picolisp) (const :tag "PlantUML" plantuml) (const :tag "Python" python) (const :tag "Ruby" ruby) (const :tag "Sass" sass) (const :tag "Scala" scala) (const :tag "Scheme" scheme) (const :tag "Screen" screen) (const :tag "Shell Script" shell) (const :tag "Shen" shen) (const :tag "Sql" sql) (const :tag "Sqlite" sqlite) (const :tag "ebnf2ps" ebnf2ps)) :value-type (boolean :tag "Activate" :value t)) org-clone-delete-id nil "Remove ID property of clones of a subtree.\nWhen non-nil, clones of a subtree don't inherit the ID property.\nOtherwise they inherit the ID property with a new unique\nidentifier." boolean org-id autoload org-release "org-version.el" org-git-version] 12)
  autoload-do-load((autoload "org" "Toggle the minor mode `orgstruct-mode'.\nThis mode is for using Org-mode structure commands in other\nmodes.  The following keys behave as if Org-mode were active, if\nthe cursor is on a headline, or on a plain list item (both as\ndefined by Org-mode).\n\n(fn &optional ARG)" t nil) orgstruct-mode)
  command-execute(orgstruct-mode record)
  execute-extended-command(nil "orgstruct-mode")
  smex-read-and-run(("toggle-debug-on-error" "edebug-defun" "emacs-version" "org-reload" "zrgrep" "find-library" "paredit-mode" "eval-buffer" "magit-status" "rgrep" "menu-bar-mode" "revert-buffer" "imenu" "compile" "ffap" "shell" "list-packages" "man" "org-publish" "eww" "align-regexp" "org-mode" "R" "erc" "widen" "run-python" "describe-char" "text-mode" "upcase-region" "eval-region" "narrow-to-defun" "ediff-merge" "insert-char" "copyright-update" "customize-variable" "gnus-summary-save-article-file" "rzgrep" "tetris" "apropos" "magit-stash" "smerge-mode" "emacs-lisp-mode" "update-packages" "package-autoremove" "unhighlight-regexp" "company-mode" "apropos-command" "package-install" "message-attach-dir" "gnus-mime-save-part" ...))
  smex()
  funcall-interactively(smex)
  call-interactively(smex nil nil)
  command-execute(smex)

In GNU Emacs 25.0.50.1 (x86_64-unknown-linux-gnu, GTK+ Version 3.16.6)
 of 2015-08-11 on W530
Repository revision: acde89a2088180831e506d0c4255b306a339e291
Windowing system distributor `The X.Org Foundation', version 11.0.11702000
Configured using:
 `configure --prefix=/usr --sysconfdir=/etc --localstatedir=/var
 --libexecdir=/usr/lib --mandir=/usr/share/man --without-sound --with-xft
 --with-xwidgets --with-x-toolkit=gtk3 'CFLAGS=-march=x86-64
 -mtune=generic -O2 -pipe -fstack-protector-strong
 --param=ssp-buffer-size=4' 'LDFLAGS=-lMagickWand-6.Q16HDRI
 -lMagickCore-6.Q16HDRI ' CPPFLAGS=-D_FORTIFY_SOURCE=2'

Configured features:
XPM JPEG TIFF GIF PNG RSVG IMAGEMAGICK GPM DBUS GCONF GSETTINGS NOTIFY ACL
GNUTLS LIBXML2 FREETYPE M17N_FLT LIBOTF XFT ZLIB TOOLKIT_SCROLL_BARS GTK3
X11

Important settings:
  value of $LANG: es_ES.utf8
  locale-coding-system: utf-8-unix

Major mode: Group

Minor modes in effect:
  shell-dirtrack-mode: t
  gnus-topic-mode: t
  hl-line-mode: t
  cursor-sensor-mode: t
  gnus-undo-mode: t
  nyan-mode: t
  global-company-mode: t
  company-mode: t
  diff-auto-refine-mode: t
  ido-everywhere: t
  global-auto-revert-mode: t
  which-function-mode: t
  winner-mode: t
  delete-selection-mode: t
  show-paren-mode: t
  electric-pair-mode: t
  savehist-mode: t
  save-place-mode: t
  tooltip-mode: t
  global-eldoc-mode: t
  electric-indent-mode: t
  mouse-wheel-mode: t
  tool-bar-mode: t
  menu-bar-mode: t
  file-name-shadow-mode: t
  global-font-lock-mode: t
  font-lock-mode: t
  auto-composition-mode: t
  auto-encryption-mode: t
  auto-compression-mode: t
  buffer-read-only: t
  column-number-mode: t
  line-number-mode: t
  global-visual-line-mode: t
  visual-line-mode: t
  transient-mark-mode: t

Recent messages:
No new newsgroups
Checking new news...
Reading active file via nnnil...done
Reading active file via nndraft...done
Checking new news...done
previous-line: Beginning of buffer
Checking new news...
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Checking new news...done
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Features:
(shadow org-bullets cdlatex texmathp reftex reftex-vars org-rmail org-mhe
org-irc org-info org-gnus org-docview doc-view jka-compr image-mode
org-bibtex bibtex org-bbdb org-element avl-tree org-w3m org-table
bbdb-anniv diary-lib diary-loaddefs org-inlinetask org-indent
org-location-google-maps org-agenda google-maps google-maps-static
google-maps-geocode google-maps-base json org org-macro org-footnote
org-pcomplete org-list org-faces org-entities noutline outline org-version
ob-calc calc-store calc-trail calc-ext calc calc-loaddefs calc-macs
ob-shell readline-complete shell pcomplete ob-awk ob-org ob-octave
ob-python ob-C ob-emacs-lisp ob-fortran cc-mode cc-fonts cc-guess cc-menus
cc-cmds cc-styles cc-align cc-engine cc-vars cc-defs ob-latex ob-R ob
ob-tangle ob-ref ob-lob ob-table ob-exp org-src ob-keys ob-comint comint
ob-core ob-eval org-compat org-macs org-loaddefs find-func cal-menu
calendar cal-loaddefs quail footnote autocap cookie1 emacsbug url-http
url-gw url-auth gnus-gravatar gravatar url-cache gnus-picon sort smiley
ansi-color gnus-cite qp mm-archive mail-extr gnus-async gnus-bcklg gnus-ml
disp-table gnus-notifications gnus-fun notifications dbus xml
ido-completing-read+ smex gnus-topic hl-line cursor-sensor epa-file epa
derived epg gnutls utf-7 network-stream nsm starttls nnfolder nnnil
gnus-load gnus-demon gnus-harvest bbdb-com crm bbdb bbdb-site timezone
mailalias nnir smtpmail-async smtpmail sendmail async gnus-delay
gnus-draft gnus-agent gnus-srvr gnus-score score-mode nnvirtual nntp
gnus-cache gnus-msg gnus-art mm-uu mml2015 mm-view mml-smime smime dig
gnus-sum nndraft nnmh gnus-group gnus-undo gnus-start gnus-cloud nnimap
tls utf7 netrc parse-time gnus-spec nnmail gnus-int gnus-range mail-source
message idna git-annex dired-aux dired-x dired format-spec rfc822 mml
mml-sec mm-decode mm-bodies mm-encode mail-parse rfc2231 rfc2047 rfc2045
ietf-drums mailabbrev gmm-utils mailheader gnus-win nnoo gnus gnus-ems
gnus-compat url url-proxy url-privacy url-expand url-methods url-history
url-cookie url-domsuf url-util url-parse auth-source password-cache
url-vars mailcap nnheader gnus-util mail-utils mm-util help-fns mail-prsvr
wid-edit nyan-mode server paredit checkdoc thingatpt flyspell ispell
cap-words superword subword company-files company-oddmuse company-keywords
company-etags etags xref project eieio byte-opt bytecomp byte-compile
cl-extra help-mode cconv eieio-core company-gtags company-dabbrev-code
company-dabbrev company-capf company-cmake company-xcode company-clang
company-semantic company-eclim company-template company-css company-nxml
company-bbdb company-c-headers rx company-jedi jedi-core
python-environment epc cl-seq ctable concurrent deferred cl company vc
vc-dispatcher vc-git diff-mode easy-mmode bookmark pp ido seq autorevert
filenotify which-func imenu winner ring windmove delsel paren elec-pair
savehist saveplace cl-macs time-date gv edmacro kmacro cl-loaddefs pcase
cl-lib finder-inf tex-site advice info package easymenu epg-config
mule-util tooltip eldoc electric uniquify ediff-hook vc-hooks
lisp-float-type mwheel x-win term/common-win x-dnd tool-bar dnd fontset
image regexp-opt fringe tabulated-list newcomment elisp-mode lisp-mode
prog-mode register page menu-bar rfn-eshadow timer select scroll-bar mouse
jit-lock font-lock syntax facemenu font-core frame cl-generic cham
georgian utf-8-lang misc-lang vietnamese tibetan thai tai-viet lao korean
japanese eucjp-ms cp51932 hebrew greek romanian slovak czech european
ethiopic indian cyrillic chinese charscript case-table epa-hook
jka-cmpr-hook help simple abbrev minibuffer cl-preloaded nadvice loaddefs
button faces cus-face macroexp files text-properties overlay sha1 md5
base64 format env code-pages mule custom widget hashtable-print-readable
backquote dbusbind gfilenotify dynamic-setting system-font-setting
font-render-setting move-toolbar gtk x-toolkit x multi-tty
make-network-process emacs)

Memory information:
((conses 16 568473 20260)
 (symbols 48 56372 6)
 (miscs 40 1213 346)
 (strings 32 137317 16226)
 (string-bytes 1 4384351)
 (vectors 16 54115)
 (vector-slots 8 913747 22326)
 (floats 8 593 197)
 (intervals 56 702 0)
 (buffers 976 33)
 (heap 1024 70530 2355))

-- 
A clever person solves a problem. A wise person avoids it